Description

Ensembl ID AT5G17930 Gene ID 831661 Accession -
Symbol AT5G17930 Alias - Full Name MIF4G domain-containing protein / MA3 domain-containing protein
Status Confidence Length 4488 bases Strand Minus strand
Position 5 : 5939994 - 5944481 RNA binding domain MIF4G , MA3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT5G17930 MA3 PF02847 5.4e-24 1
AT5G17930 MIF4G PF02854 1.3e-09 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT5G17930-201 AT5G17930 2689 784aa AT5G17930

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G17930arabidopsis_thalianaAT1G52325.136.551721.3793arabidopsis_thalianaAT5G17930.16.76023.95408
AT5G17930arabidopsis_thalianaAT1G80930.130.222214.6667arabidopsis_thalianaAT5G17930.134.693916.8367

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G17930arabidopsis_thalianaAT5G17930.134.056117.7296chondrus_crispusCDF3598540.763421.2214
AT5G17930arabidopsis_thalianaAT5G17930.145.025528.0612chlamydomonas_reinhardtiiPNW7944231.88819.8735
AT5G17930arabidopsis_thalianaAT5G17930.152.55133.801marchantia_polymorphaPTQ2973067.210443.23
AT5G17930arabidopsis_thalianaAT5G17930.169.387850.8929papaver_somniferumRZC7781271.578952.5
AT5G17930arabidopsis_thalianaAT5G17930.165.688850.2551cannabis_sativa_femalecds.evm.model.09.124069.783253.3875
AT5G17930arabidopsis_thalianaAT5G17930.170.663354.5918ficus_caricaFCD_00016865-RA:cds63.314348.9143
AT5G17930arabidopsis_thalianaAT5G17930.172.193957.0153theobroma_cacaoEOY1053069.024454.5122
AT5G17930arabidopsis_thalianaAT5G17930.130.229621.6837cucumis_meloMELO3C008815.2.166.760647.8873
AT5G17930arabidopsis_thalianaAT5G17930.165.816350.3827cucumis_sativusKGN539237557.4128
AT5G17930arabidopsis_thalianaAT5G17930.169.260254.8469populus_trichocarpaPotri.013G061400.1.v4.167.621453.5492
AT5G17930arabidopsis_thalianaAT5G17930.165.943950.7653solanum_lycopersicumSolyc03g097280.3.150.835839.1347
AT5G17930arabidopsis_thalianaAT5G17930.141.454118.3673caenorhabditis_elegansY52B11A.10.139.682517.5824
AT5G17930arabidopsis_thalianaAT5G17930.155.739843.2398lactuca_sativacds-PLY70996.173.199356.7839
AT5G17930arabidopsis_thalianaAT5G17930.129.719418.2398ostreococcus_lucimarinusABO9959557.107835.049
AT5G17930arabidopsis_thalianaAT5G17930.166.964351.4031eragrostis_curvulaTVU1921760.206446.2156
AT5G17930arabidopsis_thalianaAT5G17930.166.071450.8929citrullus_lanatusCla97C04G072010.174.425357.3276
AT5G17930arabidopsis_thalianaAT5G17930.169.005153.4439vigna_radiataVradi0007s01620.163.423249.1208
AT5G17930arabidopsis_thalianaAT5G17930.166.836749.1071amborella_trichopodaERM9358563.980547.0085
AT5G17930arabidopsis_thalianaAT5G17930.169.005153.1888vigna_unguiculataVigun01g090300.1.v1.268.567852.8517
AT5G17930arabidopsis_thalianaAT5G17930.171.30154.5918prunus_aviumPav_sc0002327.1_g670.1.mk:mrna71.666754.8718
AT5G17930arabidopsis_thalianaAT5G17930.167.857153.699phaseolus_vulgarisESW3397268.556754.2526
AT5G17930arabidopsis_thalianaAT5G17930.164.030649.3622asparagus_officinalisONK7023662.437848.1343
AT5G17930arabidopsis_thalianaAT5G17930.120.153114.7959pisum_sativumPsat5g302960.1.cds71.171252.2523
AT5G17930arabidopsis_thalianaAT5G17930.169.132753.3163pisum_sativumPsat3g087120.1.cds69.755553.7967
AT5G17930arabidopsis_thalianaAT5G17930.165.306149.1071brachypodium_distachyonKQK0038668.909851.817
AT5G17930arabidopsis_thalianaAT5G17930.118.622413.9031brachypodium_distachyonKQK0755376.041756.7708
AT5G17930arabidopsis_thalianaAT5G17930.129.209220.2806quercus_subercds-POF22934.149.782634.5652
AT5G17930arabidopsis_thalianaAT5G17930.169.387854.3367quercus_subercds-POE50443.141.975332.8704
AT5G17930arabidopsis_thalianaAT5G17930.162.882749.2347ananas_comosusAco008026.1.mrna174.58458.3964
AT5G17930arabidopsis_thalianaAT5G17930.196.30193.1122arabidopsis_lyratafgenesh2_kg.6__1792__AT5G17930.197.293894.0722
AT5G17930arabidopsis_thalianaAT5G17930.167.729653.9541quercus_lobataQL07p027173:mrna53.908642.9442
AT5G17930arabidopsis_thalianaAT5G17930.168.239853.3163capsicum_annuumPHT8774146.724936.5065
AT5G17930arabidopsis_thalianaAT5G17930.169.515353.699lupinus_angustifoliusOIW0192569.604153.7676
AT5G17930arabidopsis_thalianaAT5G17930.191.709283.9286eutrema_salsugineumESQ4179192.061584.251
AT5G17930arabidopsis_thalianaAT5G17930.195.025591.9643arabidopsis_hallerig13303.t196.627893.5149
AT5G17930arabidopsis_thalianaAT5G17930.164.668449.1071cajanus_cajanC.cajan_05176.t73.054855.4755
AT5G17930arabidopsis_thalianaAT5G17930.166.326550setaria_viridisTKW2426365.162949.1228
AT5G17930arabidopsis_thalianaAT5G17930.162.372447.449oryza_nivaraONIVA05G03120.166.440250.5435
AT5G17930arabidopsis_thalianaAT5G17930.166.581651.148ipomoea_trilobaitb15g24220.t159.58945.7763
AT5G17930arabidopsis_thalianaAT5G17930.166.19951.4031ipomoea_trilobaitb12g14990.t259.655246.3218
AT5G17930arabidopsis_thalianaAT5G17930.164.795950oryza_glumipatulaOGLUM05G03180.166.666751.4436
AT5G17930arabidopsis_thalianaAT5G17930.165.816350.2551zea_maysZm00001eb417990_P00366.580650.8387
AT5G17930arabidopsis_thalianaAT5G17930.165.688849.7449lolium_perennecds.KYUSt_chr1.571468.575251.9308
AT5G17930arabidopsis_thalianaAT5G17930.158.418436.9898chara_brauniiGBG9109746.592129.5015
AT5G17930arabidopsis_thalianaAT5G17930.163.392949.1071oryza_brachyanthaOB05G13080.168.741453.2503
AT5G17930arabidopsis_thalianaAT5G17930.120.663315.1786glycine_maxKRG9980962.548345.9459
AT5G17930arabidopsis_thalianaAT5G17930.169.005153.0612glycine_maxKRG9486968.13652.3929
AT5G17930arabidopsis_thalianaAT5G17930.168.877553.4439glycine_maxKRH0667068.095852.8373
AT5G17930arabidopsis_thalianaAT5G17930.169.260252.8061corymbia_citriodoracds-KAF8043637.167.9651.8148
AT5G17930arabidopsis_thalianaAT5G17930.165.943949.3622aegilops_tauschiiAET1Gv20223200.264.868348.5571
AT5G17930arabidopsis_thalianaAT5G17930.165.943949.4898triticum_urartuTuG1812G0100001115.01.T0169.770652.3617
AT5G17930arabidopsis_thalianaAT5G17930.161.479647.7041oryza_longistaminataKN538696.1_FGP05966.11851.3032
AT5G17930arabidopsis_thalianaAT5G17930.161.734747.1939fraxinus_excelsiorFRAEX38873_v2_000060950.1.cds64.021248.9418
AT5G17930arabidopsis_thalianaAT5G17930.165.178648.2143avena_sativa_sangAVESA.00010b.r2.3AG0441600.1.CDS56.153841.5385
AT5G17930arabidopsis_thalianaAT5G17930.165.433748.9796avena_sativa_sangAVESA.00010b.r2.3DG0562490.1.CDS68.766851.4745
AT5G17930arabidopsis_thalianaAT5G17930.152.933741.4541avena_sativa_sangAVESA.00010b.r2.7AG1194790.1.CDS76.709860.0739
AT5G17930arabidopsis_thalianaAT5G17930.165.688849.7449avena_sativa_sangAVESA.00010b.r2.1DG0142090.2.CDS68.758352.0694
AT5G17930arabidopsis_thalianaAT5G17930.121.811217.4745avena_sativa_sangAVESA.00010b.r2.3DG0541950.1.CDS83.009766.5049
AT5G17930arabidopsis_thalianaAT5G17930.164.540848.9796musa_acuminataMa07_p28810.163.72848.3627
AT5G17930arabidopsis_thalianaAT5G17930.162.882749.2347oryza_glaberrimaORGLA05G0030000.167.626952.9492
AT5G17930arabidopsis_thalianaAT5G17930.165.943949.1071hordeum_vulgareHORVU.MOREX.r3.1HG0020300.169.770651.9568
AT5G17930arabidopsis_thalianaAT5G17930.165.943949.2347triticum_turgidumTRITD1Av1G046480.269.770652.0918
AT5G17930arabidopsis_thalianaAT5G17930.166.19949.7449triticum_turgidumTRITD1Bv1G043450.370.135152.7027
AT5G17930arabidopsis_thalianaAT5G17930.166.19949.2347panicum_halliiPUZ6402267.402650.1299
AT5G17930arabidopsis_thalianaAT5G17930.165.688850.1276echinochloa_crusgalliscaffold116.148.cds64.054748.8806
AT5G17930arabidopsis_thalianaAT5G17930.165.943949.6173echinochloa_crusgalliscaffold13.317.cds64.223648.323
AT5G17930arabidopsis_thalianaAT5G17930.169.260251.9133actinidia_chinensisPSS2649371.635953.6939
AT5G17930arabidopsis_thalianaAT5G17930.171.173556.3776citrus_clementinaESR5670571.355556.5217
AT5G17930arabidopsis_thalianaAT5G17930.164.795949.7449oryza_indicaBGIOSGA019172-PA66.492151.0471
AT5G17930arabidopsis_thalianaAT5G17930.123.596917.602selaginella_moellendorffiiEFJ2213970.342252.4715
AT5G17930arabidopsis_thalianaAT5G17930.150.255135.0765selaginella_moellendorffiiEFJ1841863.96144.6429
AT5G17930arabidopsis_thalianaAT5G17930.142.984734.8214oryza_sativaOs05t0147200-0178.190363.3411
AT5G17930arabidopsis_thalianaAT5G17930.144.770425.5102homo_sapiensENSP0000027582040.81423.2558
AT5G17930arabidopsis_thalianaAT5G17930.166.19949.7449triticum_aestivumTraesCS1B02G109000.170.135152.7027
AT5G17930arabidopsis_thalianaAT5G17930.166.071449.6173triticum_aestivumTraesCS1D02G091200.169.905552.4966
AT5G17930arabidopsis_thalianaAT5G17930.165.943949.2347triticum_aestivumTraesCS1A02G109500.169.770652.0918
AT5G17930arabidopsis_thalianaAT5G17930.162.372447.449oryza_rufipogonORUFI05G03280.166.440250.5435
AT5G17930arabidopsis_thalianaAT5G17930.166.19949.3622secale_cerealeSECCE1Rv1G0013230.170.040552.2267
AT5G17930arabidopsis_thalianaAT5G17930.168.877554.7194gossypium_raimondiiKJB4453473.770558.6066
AT5G17930arabidopsis_thalianaAT5G17930.164.923550.2551helianthus_annuusmRNA:HanXRQr2_Chr02g008652167.32852.1164
AT5G17930arabidopsis_thalianaAT5G17930.164.795950.2551helianthus_annuusmRNA:HanXRQr2_Chr12g052086167.284852.1854
AT5G17930arabidopsis_thalianaAT5G17930.162.627648.7245oryza_punctataOPUNC05G03020.168.005552.9086
AT5G17930arabidopsis_thalianaAT5G17930.158.290844.6429eragrostis_tefEt_9B_064281.CDS58.66544.9294
AT5G17930arabidopsis_thalianaAT5G17930.159.056145.2806eragrostis_tefEt_9A_061693.CDS68.188552.2828
AT5G17930arabidopsis_thalianaAT5G17930.168.877553.9541medicago_truncatulaAES8089468.702353.8168
AT5G17930arabidopsis_thalianaAT5G17930.152.678641.4541saccharum_spontaneumSspon.07G0013300-1A-mRNA-165.039451.1811
AT5G17930arabidopsis_thalianaAT5G17930.162.244946.8112saccharum_spontaneumSspon.07G0013300-2B-mRNA-1:cds64.46548.4808
AT5G17930arabidopsis_thalianaAT5G17930.165.688849.8724sorghum_bicolorEES1769966.451650.4516
AT5G17930arabidopsis_thalianaAT5G17930.165.943949.1071triticum_dicoccoidesTRIDC1AG014930.667.142950
AT5G17930arabidopsis_thalianaAT5G17930.166.071449.4898triticum_dicoccoidesTRIDC1BG015670.263.480447.549
AT5G17930arabidopsis_thalianaAT5G17930.168.877551.5306coffea_canephoraCDP1052761.224545.805
AT5G17930arabidopsis_thalianaAT5G17930.169.89854.7194manihot_esculentaOAY4449063.720949.8837
AT5G17930arabidopsis_thalianaAT5G17930.167.984751.2755kalanchoe_fedtschenkoiKaladp0086s0016.1.v1.169.220852.2078
AT5G17930arabidopsis_thalianaAT5G17930.168.112252.551trifolium_pratenseTp57577_TGAC_v2_mRNA1848068.112252.551
AT5G17930arabidopsis_thalianaAT5G17930.113.775510.8418trifolium_pratenseTp57577_TGAC_v2_mRNA3761474.482858.6207
AT5G17930arabidopsis_thalianaAT5G17930.169.642953.4439eucalyptus_grandisKCW8989967.99552.1793
AT5G17930arabidopsis_thalianaAT5G17930.163.520447.7041dioscorea_rotundataDRNTG_14761.171.041453.3524
AT5G17930arabidopsis_thalianaAT5G17930.170.790854.4643prunus_persicaONI3553172.739255.9633
AT5G17930arabidopsis_thalianaAT5G17930.121.811217.4745avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0001313.183.009766.5049
AT5G17930arabidopsis_thalianaAT5G17930.165.05148.0867avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0001763.256.04441.4286
AT5G17930arabidopsis_thalianaAT5G17930.165.433748.9796avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0002388.268.766851.4745
AT5G17930arabidopsis_thalianaAT5G17930.165.688849.7449avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0002641.368.758352.0694
AT5G17930arabidopsis_thalianaAT5G17930.165.816349.7449avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0000371.168.891952.0694
AT5G17930arabidopsis_thalianaAT5G17930.162.549.2347chenopodium_quinoaAUR62039715-RA:cds72.700357.27
AT5G17930arabidopsis_thalianaAT5G17930.163.010248.3418chenopodium_quinoaAUR62036264-RA:cds67.764151.989
AT5G17930arabidopsis_thalianaAT5G17930.166.326549.6173digitaria_exilisDexi3A01G0011200.1:cds60.889945.5504
AT5G17930arabidopsis_thalianaAT5G17930.166.454149.3622digitaria_exilisDexi3B01G0011340.1:cds59.679344.3299
AT5G17930arabidopsis_thalianaAT5G17930.161.862247.9592oryza_barthiiOBART05G03130.166.529551.5775
AT5G17930arabidopsis_thalianaAT5G17930.187.755179.3367brassica_oleraceaBo2g014100.188.659880.1546
AT5G17930arabidopsis_thalianaAT5G17930.171.045954.5918prunus_dulcisVVA2025373.001356.0944
AT5G17930arabidopsis_thalianaAT5G17930.131.760217.602galdieria_sulphurariaEME2693441.021422.7348
AT5G17930arabidopsis_thalianaAT5G17930.169.132754.4643corylus_avellanaCav09g10460.t164.447150.7729
AT5G17930arabidopsis_thalianaAT5G17930.159.693946.5561leersia_perrieriLPERR05G02930.162.151448.4728
AT5G17930arabidopsis_thalianaAT5G17930.166.326552.4235nicotiana_attenuataOIT2185952.684941.6413
AT5G17930arabidopsis_thalianaAT5G17930.167.346950.8929olea_europaeaOE9A110738C258.928644.5312
AT5G17930arabidopsis_thalianaAT5G17930.141.836722.8316saccharomyces_cerevisiaeYLR336C36.48519.911
AT5G17930arabidopsis_thalianaAT5G17930.170.025554.2092pistacia_veracds-EVM0030338.170.47554.5571
AT5G17930arabidopsis_thalianaAT5G17930.146.683723.3418drosophila_melanogasterFBpp007276842.857121.4286
AT5G17930arabidopsis_thalianaAT5G17930.188.64880.3571brassica_napusCDY0267388.988580.6658
AT5G17930arabidopsis_thalianaAT5G17930.170.918454.7194corchorus_capsularisOMO6790572.207855.7143
AT5G17930arabidopsis_thalianaAT5G17930.162.372447.449oryza_meridionalisOMERI05G03150.166.440250.5435
AT5G17930arabidopsis_thalianaAT5G17930.191.19985.8418camelina_sativaCsa08g010280.166.635662.7213
AT5G17930arabidopsis_thalianaAT5G17930.193.877588.3929camelina_sativaCsa13g020780.157.365654.014
AT5G17930arabidopsis_thalianaAT5G17930.193.367387.8827camelina_sativaCsa20g026200.194.208588.6744
AT5G17930arabidopsis_thalianaAT5G17930.193.239888.1378camelina_sativaCsa11g015200.194.079888.9318
AT5G17930arabidopsis_thalianaAT5G17930.170.790854.5918malus_domestica_goldenmRNA:MD12G000830070.342254.2459
AT5G17930arabidopsis_thalianaAT5G17930.165.05149.6173daucus_carotaKZN1059257.562143.9052
AT5G17930arabidopsis_thalianaAT5G17930.17.397966.5051rosa_chinensisPRQ2843492.063580.9524
AT5G17930arabidopsis_thalianaAT5G17930.170.025554.4643rosa_chinensisPRQ2429671.206255.3826
AT5G17930arabidopsis_thalianaAT5G17930.17.397966.5051rosa_chinensisPRQ2844592.063580.9524
AT5G17930arabidopsis_thalianaAT5G17930.128.316322.7041juglans_regiacds.Jr04_05350_p183.458666.9173
AT5G17930arabidopsis_thalianaAT5G17930.158.673542.0918nymphaea_colorataNC2G0001840.1:cds61.333344
AT5G17930arabidopsis_thalianaAT5G17930.165.306150.5102vigna_angularisKOM3856868.632753.0831
AT5G17930arabidopsis_thalianaAT5G17930.166.326550setaria_italicaKQL1307765.162949.1228
AT5G17930arabidopsis_thalianaAT5G17930.160.969438.648physcomitrium_patensPp3c3_21680V3.154.133634.3148
AT5G17930arabidopsis_thalianaAT5G17930.160.969438.648physcomitrium_patensPp3c3_21687V3.154.133634.3148
AT5G17930arabidopsis_thalianaAT5G17930.160.714345.4082vitis_viniferaVitvi05g00782_P00270.103152.43
AT5G17930arabidopsis_thalianaAT5G17930.165.433751.5306vitis_viniferaVitvi08g00114_P00172.355456.9817
AT5G17930arabidopsis_thalianaAT5G17930.159.693943.8776cynara_cardunculusKVI0726863.673546.8027

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component

Expression