Description

Ensembl ID AT5G12410 Gene ID 831116 Accession -
Symbol AT5G12410 Alias - Full Name THUMP domain-containing protein
Status Confidence Length 2404 bases Strand Minus strand
Position 5 : 4021815 - 4024218 RNA binding domain THUMP
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT5G12410 THUMP PF02926 2.6e-11 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT5G12410-201 AT5G12410 1558 376aa AT5G12410

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G12410arabidopsis_thalianaAT1G09290.132.471315.5172arabidopsis_thalianaAT5G12410.130.053214.3617

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G12410arabidopsis_thalianaAT5G12410.139.893622.6064chondrus_crispusCDF3238733.482118.9732
AT5G12410arabidopsis_thalianaAT5G12410.137.76623.1383chlamydomonas_reinhardtiiPNW7336436.597922.4227
AT5G12410arabidopsis_thalianaAT5G12410.151.063833.5106marchantia_polymorphaPTQ3323950.659633.2454
AT5G12410arabidopsis_thalianaAT5G12410.117.287215.1596papaver_somniferumRZC8299885.526375
AT5G12410arabidopsis_thalianaAT5G12410.164.095750.266papaver_somniferumRZC7756845.471735.6604
AT5G12410arabidopsis_thalianaAT5G12410.171.276657.1809cannabis_sativa_femalecds.evm.model.06.100670.526356.5789
AT5G12410arabidopsis_thalianaAT5G12410.171.542657.4468ficus_caricaFCD_00019156-RA:cds71.733357.6
AT5G12410arabidopsis_thalianaAT5G12410.17560.9043theobroma_cacaoEOY3276965.581453.2558
AT5G12410arabidopsis_thalianaAT5G12410.168.61754.7872beta_vulgarisKMT1456468.854.9333
AT5G12410arabidopsis_thalianaAT5G12410.150.531940.1596cucumis_meloMELO3C015170.2.171.428656.7669
AT5G12410arabidopsis_thalianaAT5G12410.173.670259.5745populus_trichocarpaPotri.009G049700.1.v4.173.280459.2593
AT5G12410arabidopsis_thalianaAT5G12410.174.202159.3085populus_trichocarpaPotri.001G254600.1.v4.173.614858.8391
AT5G12410arabidopsis_thalianaAT5G12410.171.276653.9894solanum_lycopersicumSolyc11g065180.2.169.973953.0026
AT5G12410arabidopsis_thalianaAT5G12410.162.76649.2021lactuca_sativacds-PLY65471.168.405853.6232
AT5G12410arabidopsis_thalianaAT5G12410.125.797915.1596ostreococcus_lucimarinusABP0058653.005531.1475
AT5G12410arabidopsis_thalianaAT5G12410.165.159647.6064eragrostis_curvulaTVU2488562.659845.7801
AT5G12410arabidopsis_thalianaAT5G12410.164.893647.6064eragrostis_curvulaTVT9683954.464339.9554
AT5G12410arabidopsis_thalianaAT5G12410.170.212856.117citrullus_lanatusCla97C03G063280.169.291355.3806
AT5G12410arabidopsis_thalianaAT5G12410.147.606438.2979vigna_radiataVradi11g01580.177.826162.6087
AT5G12410arabidopsis_thalianaAT5G12410.161.436247.8723amborella_trichopodaERN0511666.956552.1739
AT5G12410arabidopsis_thalianaAT5G12410.169.946855.0532vigna_unguiculataVigun02g183500.1.v1.270.698955.6452
AT5G12410arabidopsis_thalianaAT5G12410.172.074559.0426prunus_aviumPav_sc0002553.1_g110.1.mk:mrna63.915152.3585
AT5G12410arabidopsis_thalianaAT5G12410.169.680955.5851phaseolus_vulgarisESW2897969.680955.5851
AT5G12410arabidopsis_thalianaAT5G12410.166.755350.5319asparagus_officinalisONK6349265.025949.2228
AT5G12410arabidopsis_thalianaAT5G12410.164.361747.3404brachypodium_distachyonKQJ8817359.605943.8424
AT5G12410arabidopsis_thalianaAT5G12410.173.138358.2447quercus_subercds-POE71296.168.069354.2079
AT5G12410arabidopsis_thalianaAT5G12410.151.063841.7553ananas_comosusAco006313.1.mrna161.736350.4823
AT5G12410arabidopsis_thalianaAT5G12410.194.946892.5532arabidopsis_lyratafgenesh2_kg.6__1222__AT5G12410.198.618896.1326
AT5G12410arabidopsis_thalianaAT5G12410.166.489451.5957quercus_lobataQL01p018092:mrna50.301839.0342
AT5G12410arabidopsis_thalianaAT5G12410.171.808556.6489quercus_lobataQL01p018141:mrna34.220526.9962
AT5G12410arabidopsis_thalianaAT5G12410.169.946853.9894capsicum_annuumPHT6850268.134752.5907
AT5G12410arabidopsis_thalianaAT5G12410.171.010654.2553lupinus_angustifoliusOIV9494361.379346.8966
AT5G12410arabidopsis_thalianaAT5G12410.187.76683.2447eutrema_salsugineumESQ4121182.578.25
AT5G12410arabidopsis_thalianaAT5G12410.197.872395.4787arabidopsis_hallerig10714.t297.612795.2255
AT5G12410arabidopsis_thalianaAT5G12410.170.744753.1915solanum_tuberosumPGSC0003DMT40008026169.633552.356
AT5G12410arabidopsis_thalianaAT5G12410.165.957448.4043setaria_viridisTKW0123861.538545.1613
AT5G12410arabidopsis_thalianaAT5G12410.121.542614.3617oryza_nivaraONIVA11G16230.159.558839.7059
AT5G12410arabidopsis_thalianaAT5G12410.166.489448.6702oryza_nivaraONIVA10G15980.155.432440.5765
AT5G12410arabidopsis_thalianaAT5G12410.172.340455.5851ipomoea_trilobaitb07g01730.t16852.25
AT5G12410arabidopsis_thalianaAT5G12410.166.755348.4043oryza_glumipatulaOGLUM11G16920.167.112348.6631
AT5G12410arabidopsis_thalianaAT5G12410.165.159647.8723zea_maysZm00001eb200070_P00161.403545.1128
AT5G12410arabidopsis_thalianaAT5G12410.173.670254.2553sesamum_indicumSIN_1015198.t65.330248.1132
AT5G12410arabidopsis_thalianaAT5G12410.163.563846.0106lolium_perennecds.KYUSt_chr4.3323858.722442.5061
AT5G12410arabidopsis_thalianaAT5G12410.154.521333.2447chara_brauniiGBG5996924.260414.7929
AT5G12410arabidopsis_thalianaAT5G12410.188.297980.0532arabis_alpinaKFK255135045.3313
AT5G12410arabidopsis_thalianaAT5G12410.161.170256.117brassica_junceacds.BjuB08g56400S94.262386.4754
AT5G12410arabidopsis_thalianaAT5G12410.185.904378.1915brassica_junceacds.BjuA03g52960S89.473781.4404
AT5G12410arabidopsis_thalianaAT5G12410.185.638377.1277brassica_junceacds.BjuB02g40620S21.654319.5024
AT5G12410arabidopsis_thalianaAT5G12410.188.031979.2553brassica_junceacds.BjuA10g22260S90.437281.4208
AT5G12410arabidopsis_thalianaAT5G12410.166.489448.6702oryza_brachyanthaOB11G23200.166.489448.6702
AT5G12410arabidopsis_thalianaAT5G12410.169.414956.117glycine_maxKRH7767067.968854.9479
AT5G12410arabidopsis_thalianaAT5G12410.170.744756.383glycine_maxKRH2781764.563151.4563
AT5G12410arabidopsis_thalianaAT5G12410.169.946856.117corymbia_citriodoracds-KAF8041203.171.081157.027
AT5G12410arabidopsis_thalianaAT5G12410.164.095747.6064aegilops_tauschiiAET2Gv20223400.153.436839.6896
AT5G12410arabidopsis_thalianaAT5G12410.164.361747.3404triticum_urartuTuG1812G0200001150.01.T0159.313743.6275
AT5G12410arabidopsis_thalianaAT5G12410.154.787240.1596oryza_longistaminataKN541545.1_FGP00363.190246.319
AT5G12410arabidopsis_thalianaAT5G12410.171.010653.1915fraxinus_excelsiorFRAEX38873_v2_000111160.1.cds69.531252.0833
AT5G12410arabidopsis_thalianaAT5G12410.163.031945.7447avena_sativa_sangAVESA.00010b.r2.4CG1299860.1.CDS60.769244.1026
AT5G12410arabidopsis_thalianaAT5G12410.163.297946.8085musa_acuminataMa01_p05030.166.480449.162
AT5G12410arabidopsis_thalianaAT5G12410.166.755348.4043oryza_glaberrimaORGLA11G0145200.167.112348.6631
AT5G12410arabidopsis_thalianaAT5G12410.164.627747.8723hordeum_vulgareHORVU.MOREX.r3.2HG0113530.156.380541.7633
AT5G12410arabidopsis_thalianaAT5G12410.163.829846.5426triticum_turgidumTRITD2Bv1G039840.255.684540.6032
AT5G12410arabidopsis_thalianaAT5G12410.148.670233.7766triticum_turgidumTRITD2Av1G030720.252.737836.5994
AT5G12410arabidopsis_thalianaAT5G12410.165.425547.8723panicum_halliiPUZ4271263.565946.5116
AT5G12410arabidopsis_thalianaAT5G12410.166.223447.8723echinochloa_crusgalliscaffold78.13.cds61.786644.665
AT5G12410arabidopsis_thalianaAT5G12410.165.691548.1383echinochloa_crusgalliscaffold175.181.cds64.490947.2585
AT5G12410arabidopsis_thalianaAT5G12410.165.691548.1383echinochloa_crusgalliscaffold7.538.cds42.150230.8874
AT5G12410arabidopsis_thalianaAT5G12410.171.010653.7234actinidia_chinensisPSR9016470.634953.4392
AT5G12410arabidopsis_thalianaAT5G12410.169.946854.5213actinidia_chinensisPSR8680671.273755.5556
AT5G12410arabidopsis_thalianaAT5G12410.173.404357.1809citrus_clementinaESR5944571.87555.9896
AT5G12410arabidopsis_thalianaAT5G12410.166.223448.6702oryza_indicaBGIOSGA035465-PA66.577548.9305
AT5G12410arabidopsis_thalianaAT5G12410.144.414930.0532selaginella_moellendorffiiEFJ3451056.610238.3051
AT5G12410arabidopsis_thalianaAT5G12410.144.680930.0532selaginella_moellendorffiiEFJ1014956.756838.1757
AT5G12410arabidopsis_thalianaAT5G12410.166.489448.6702oryza_sativaOs11t0568600-0166.844948.9305
AT5G12410arabidopsis_thalianaAT5G12410.138.031922.3404homo_sapiensENSP0000037939240.509923.796
AT5G12410arabidopsis_thalianaAT5G12410.164.361747.3404triticum_aestivumTraesCS2A02G112700.159.313743.6275
AT5G12410arabidopsis_thalianaAT5G12410.163.829846.8085triticum_aestivumTraesCS2B02G131500.155.684540.8353
AT5G12410arabidopsis_thalianaAT5G12410.164.095747.6064triticum_aestivumTraesCS2D02G113200.156.97442.3168
AT5G12410arabidopsis_thalianaAT5G12410.166.489448.6702oryza_rufipogonORUFI11G18420.166.844948.9305
AT5G12410arabidopsis_thalianaAT5G12410.164.095747.3404secale_cerealeSECCE2Rv1G0073890.157.38142.381
AT5G12410arabidopsis_thalianaAT5G12410.175.26660.3723gossypium_raimondiiKJB3573774.670259.8945
AT5G12410arabidopsis_thalianaAT5G12410.166.489453.7234helianthus_annuusmRNA:HanXRQr2_Chr14g062878175.528761.0272
AT5G12410arabidopsis_thalianaAT5G12410.166.755348.6702oryza_punctataOPUNC11G14290.165.364647.6562
AT5G12410arabidopsis_thalianaAT5G12410.164.627747.8723eragrostis_tefEt_6B_048796.CDS62.953446.6321
AT5G12410arabidopsis_thalianaAT5G12410.164.095746.8085eragrostis_tefEt_6A_046688.CDS58.072342.4096
AT5G12410arabidopsis_thalianaAT5G12410.170.212856.6489medicago_truncatulaAES9392469.841356.3492
AT5G12410arabidopsis_thalianaAT5G12410.157.978741.2234saccharum_spontaneumSspon.06G0025620-2C-mRNA-1:cds56.330740.0517
AT5G12410arabidopsis_thalianaAT5G12410.165.425547.3404sorghum_bicolorEES0996458.571442.381
AT5G12410arabidopsis_thalianaAT5G12410.163.829846.5426triticum_dicoccoidesTRIDC2BG016460.153.691339.1499
AT5G12410arabidopsis_thalianaAT5G12410.164.361747.3404triticum_dicoccoidesTRIDC2AG013620.153.30439.2071
AT5G12410arabidopsis_thalianaAT5G12410.169.946853.1915coffea_canephoraCDP0851269.946853.1915
AT5G12410arabidopsis_thalianaAT5G12410.126.329820.4787coffea_canephoraCDP0851987.610668.1416
AT5G12410arabidopsis_thalianaAT5G12410.17559.5745manihot_esculentaOAY3012270.854356.2814
AT5G12410arabidopsis_thalianaAT5G12410.168.61754.7872kalanchoe_fedtschenkoiKaladp0053s0244.1.v1.161.428649.0476
AT5G12410arabidopsis_thalianaAT5G12410.169.680956.6489trifolium_pratenseTp57577_TGAC_v2_mRNA3930868.586455.7592
AT5G12410arabidopsis_thalianaAT5G12410.188.031979.2553brassica_rapa_ro18A10p032410.1_BraROA.190.437281.4208
AT5G12410arabidopsis_thalianaAT5G12410.170.212856.9149eucalyptus_grandisKCW8718670.457.0667
AT5G12410arabidopsis_thalianaAT5G12410.165.691549.2021dioscorea_rotundataDRNTG_13270.162.060346.4824
AT5G12410arabidopsis_thalianaAT5G12410.171.808558.7766prunus_persicaONI1398958.441647.8355
AT5G12410arabidopsis_thalianaAT5G12410.163.031945.7447avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0002286.160.769244.1026
AT5G12410arabidopsis_thalianaAT5G12410.162.76645.4787avena_sativa_ot3098cds.AVESA.00001b.r3.4Dg0000458.159.898543.401
AT5G12410arabidopsis_thalianaAT5G12410.162.545.2128avena_sativa_ot3098cds.AVESA.00001b.r3.4Ag0000096.255.819540.38
AT5G12410arabidopsis_thalianaAT5G12410.168.351154.7872chenopodium_quinoaAUR62000165-RA:cds69.647755.8266
AT5G12410arabidopsis_thalianaAT5G12410.161.968143.3511digitaria_exilisDexi8B01G0011510.1:cds55.476238.8095
AT5G12410arabidopsis_thalianaAT5G12410.154.255337.766digitaria_exilisDexi8A01G0012790.1:cds62.006143.1611
AT5G12410arabidopsis_thalianaAT5G12410.166.489448.1383oryza_barthiiOBART11G17410.166.844948.3957
AT5G12410arabidopsis_thalianaAT5G12410.186.702178.1915brassica_oleraceaBo9g169420.190.304781.4404
AT5G12410arabidopsis_thalianaAT5G12410.184.308576.5957brassica_oleraceaBo3g008770.188.795580.6723
AT5G12410arabidopsis_thalianaAT5G12410.172.074558.7766prunus_dulcisVVA3672861.03649.7748
AT5G12410arabidopsis_thalianaAT5G12410.131.914919.1489galdieria_sulphurariaEME2592344.280426.5683
AT5G12410arabidopsis_thalianaAT5G12410.173.138359.8404corylus_avellanaCav10g03150.t170.694157.8406
AT5G12410arabidopsis_thalianaAT5G12410.174.73460.6383corylus_avellanaCav10g03140.t160.954449.4577
AT5G12410arabidopsis_thalianaAT5G12410.165.957448.9362leersia_perrieriLPERR11G13870.167.391350
AT5G12410arabidopsis_thalianaAT5G12410.171.010655.0532nicotiana_attenuataOIS9781572.162255.9459
AT5G12410arabidopsis_thalianaAT5G12410.172.340453.9894olea_europaeaOE9A002979C171.767853.562
AT5G12410arabidopsis_thalianaAT5G12410.170.744752.3936olea_europaeaOE9A113981C170.370452.1164
AT5G12410arabidopsis_thalianaAT5G12410.132.180921.8085saccharomyces_cerevisiaeYGL232W41.868528.3737
AT5G12410arabidopsis_thalianaAT5G12410.161.968150.5319pistacia_veracds-EVM0021039.171.036657.9268
AT5G12410arabidopsis_thalianaAT5G12410.134.574519.4149drosophila_melanogasterFBpp007319640.123522.5309
AT5G12410arabidopsis_thalianaAT5G12410.185.638378.1915brassica_napusCDX7848589.196781.4404
AT5G12410arabidopsis_thalianaAT5G12410.187.578.9894brassica_napusCDX9719390.633681.8182
AT5G12410arabidopsis_thalianaAT5G12410.187.76678.7234brassica_napusCDX6968090.41181.0959
AT5G12410arabidopsis_thalianaAT5G12410.184.574576.8617brassica_napusCDX7047489.075680.9524
AT5G12410arabidopsis_thalianaAT5G12410.174.202160.9043corchorus_capsularisOMP1124073.809560.582
AT5G12410arabidopsis_thalianaAT5G12410.165.957448.4043oryza_meridionalisOMERI11G14020.139.871429.2605
AT5G12410arabidopsis_thalianaAT5G12410.190.957483.7766camelina_sativaCsa20g018050.160.638355.8511
AT5G12410arabidopsis_thalianaAT5G12410.190.957484.8404camelina_sativaCsa08g004590.193.18886.921
AT5G12410arabidopsis_thalianaAT5G12410.190.159684.0426camelina_sativaCsa13g015270.182.481876.8856
AT5G12410arabidopsis_thalianaAT5G12410.173.670259.5745malus_domestica_goldenmRNA:MD03G013960069.59856.2814
AT5G12410arabidopsis_thalianaAT5G12410.172.606457.7128malus_domestica_goldenmRNA:MD11G015160070.725456.2176
AT5G12410arabidopsis_thalianaAT5G12410.172.074556.9149daucus_carotaKZN0799164.832551.1962
AT5G12410arabidopsis_thalianaAT5G12410.172.872357.9787rosa_chinensisPRQ3287070.076755.7545
AT5G12410arabidopsis_thalianaAT5G12410.172.074560.1064juglans_regiacds.Jr14_19020_p162.731552.3148
AT5G12410arabidopsis_thalianaAT5G12410.172.074560.1064juglans_regiacds.Jr14_19000_p171.50459.6306
AT5G12410arabidopsis_thalianaAT5G12410.172.340460.1064juglans_regiacds.Jr14_19010_p162.817652.194
AT5G12410arabidopsis_thalianaAT5G12410.172.340460.1064juglans_regiacds.Jr14_18990_p171.578959.4737
AT5G12410arabidopsis_thalianaAT5G12410.165.159649.4681nymphaea_colorataNC1G0179370.1:cds51.687839.2405
AT5G12410arabidopsis_thalianaAT5G12410.164.095749.4681vigna_angularisKOM2768838.25429.5238
AT5G12410arabidopsis_thalianaAT5G12410.165.957448.4043setaria_italicaKQK9499660.487844.3902
AT5G12410arabidopsis_thalianaAT5G12410.147.340430.3191physcomitrium_patensPp3c3_2270V3.145.64129.2308
AT5G12410arabidopsis_thalianaAT5G12410.173.670260.3723vitis_viniferaVitvi06g01274_P00170.663357.9082
AT5G12410arabidopsis_thalianaAT5G12410.162.549.2021cynara_cardunculusKVI0816460.723547.8036

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005634located_in nucleus2IDA,ISMArabidopsis_thaliana(3702)Component
GO:0018205acts_upstream_of_or_within peptidyl-lysine modification1IEAArabidopsis_thaliana(3702)Process

Expression