Description

Ensembl ID AT5G08600 Gene ID 830761 Accession -
Symbol AT5G08600 Alias - Full Name U3 ribonucleoprotein (Utp) family protein
Status Confidence Length 4065 bases Strand Plus strand
Position 5 : 2786177 - 2790241 RNA binding domain Utp14
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT5G08600 Utp14 PF04615 9.6e-164 1
AT5G08600 Utp14 PF04615 9.7e-164 2
AT5G08600 Utp14 PF04615 4.7e-100 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT5G08600-201 AT5G08600 2898 617aa AT5G08600

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G08600arabidopsis_thalianaAT4G02400.177.660867.1345arabidopsis_thalianaAT5G08600.278.579967.929

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G08600arabidopsis_thalianaAT5G08600.228.165714.9112chondrus_crispusCDF3586630.357116.0714
AT5G08600arabidopsis_thalianaAT5G08600.234.911220.2367chlamydomonas_reinhardtiiPNW7685227.882816.1626
AT5G08600arabidopsis_thalianaAT5G08600.240.35525.3254chlamydomonas_reinhardtiiPNW7685128.205117.7006
AT5G08600arabidopsis_thalianaAT5G08600.251.479333.3728marchantia_polymorphaPTQ4607339.835225.8242
AT5G08600arabidopsis_thalianaAT5G08600.237.396522.8402papaver_somniferumRZC7316452.491732.0598
AT5G08600arabidopsis_thalianaAT5G08600.264.852145.2071papaver_somniferumRZC6770360.021941.8401
AT5G08600arabidopsis_thalianaAT5G08600.222.721915.858papaver_somniferumRZC5285856.470639.4118
AT5G08600arabidopsis_thalianaAT5G08600.254.792939.0533papaver_somniferumRZC5769358.533541.7193
AT5G08600arabidopsis_thalianaAT5G08600.265.207147.8106cannabis_sativa_femalecds.evm.model.01.79061.154344.8391
AT5G08600arabidopsis_thalianaAT5G08600.266.153848.284ficus_caricaFCD_00009404-RA:cds60.432444.1081
AT5G08600arabidopsis_thalianaAT5G08600.268.639150.2959theobroma_cacaoEOX9510664.159347.0133
AT5G08600arabidopsis_thalianaAT5G08600.262.721943.6686beta_vulgarisKMT0243164.555444.9452
AT5G08600arabidopsis_thalianaAT5G08600.265.798847.1006cucumis_meloMELO3C015997.2.161.504444.0266
AT5G08600arabidopsis_thalianaAT5G08600.265.443846.2722cucumis_sativusKGN4494561.172643.2522
AT5G08600arabidopsis_thalianaAT5G08600.266.153847.574populus_trichocarpaPotri.014G128300.1.v4.162.042244.6171
AT5G08600arabidopsis_thalianaAT5G08600.266.035547.4556populus_trichocarpaPotri.002G203700.2.v4.16244.5556
AT5G08600arabidopsis_thalianaAT5G08600.267.57448.5207solanum_lycopersicumSolyc09g005760.3.163.941845.9127
AT5G08600arabidopsis_thalianaAT5G08600.229.467514.4379caenorhabditis_elegansF27C1.6.138.485318.8563
AT5G08600arabidopsis_thalianaAT5G08600.261.301843.6686lactuca_sativacds-PLY85712.162.334544.4043
AT5G08600arabidopsis_thalianaAT5G08600.240.118324.497ostreococcus_lucimarinusABO9544746.88828.6307
AT5G08600arabidopsis_thalianaAT5G08600.261.538543.3136eragrostis_curvulaTVU4710555.378138.9776
AT5G08600arabidopsis_thalianaAT5G08600.265.443846.3905citrullus_lanatusCla97C09G168320.161.10543.3149
AT5G08600arabidopsis_thalianaAT5G08600.260.710141.7751amborella_trichopodaERM9712159.512840.9513
AT5G08600arabidopsis_thalianaAT5G08600.265.088846.9823vigna_unguiculataVigun01g192200.1.v1.262.545.1136
AT5G08600arabidopsis_thalianaAT5G08600.255.976340.1183phaseolus_vulgarisESW3511164.353746.1224
AT5G08600arabidopsis_thalianaAT5G08600.263.550345.7988asparagus_officinalisONK6291560.815443.8279
AT5G08600arabidopsis_thalianaAT5G08600.262.721943.6686pisum_sativumPsat3g021720.1.cds60.989642.4626
AT5G08600arabidopsis_thalianaAT5G08600.259.64541.5385brachypodium_distachyonKQK2175257.665940.1602
AT5G08600arabidopsis_thalianaAT5G08600.266.627249.2308quercus_subercds-POE75310.161.195745.2174
AT5G08600arabidopsis_thalianaAT5G08600.259.881741.0651ananas_comosusAco001850.1.mrna158.768940.302
AT5G08600arabidopsis_thalianaAT5G08600.277.159870.2959arabidopsis_lyratafgenesh1_pg.C_scaffold_600071984.237776.7442
AT5G08600arabidopsis_thalianaAT5G08600.266.982249.2308quercus_lobataQL12p028379:mrna61.72345.3653
AT5G08600arabidopsis_thalianaAT5G08600.268.165748.0473capsicum_annuumPHT7209864.501745.4647
AT5G08600arabidopsis_thalianaAT5G08600.255.621340.1183lupinus_angustifoliusOIV9537763.002745.4424
AT5G08600arabidopsis_thalianaAT5G08600.264.14245.6805lupinus_angustifoliusOIV9537661.242943.6158
AT5G08600arabidopsis_thalianaAT5G08600.287.455681.7751arabidopsis_hallerig19065.t163.761959.6204
AT5G08600arabidopsis_thalianaAT5G08600.265.325445.6805cajanus_cajanC.cajan_25045.t62.514243.7146
AT5G08600arabidopsis_thalianaAT5G08600.267.455648.4024solanum_tuberosumPGSC0003DMT40006143364.044945.9551
AT5G08600arabidopsis_thalianaAT5G08600.260.35542.9586setaria_viridisTKV9618860.141542.8066
AT5G08600arabidopsis_thalianaAT5G08600.261.183443.787oryza_nivaraONIVA03G17970.158.484241.8552
AT5G08600arabidopsis_thalianaAT5G08600.263.313645.2071ipomoea_trilobaitb13g25980.t138.544727.5216
AT5G08600arabidopsis_thalianaAT5G08600.261.420143.9053oryza_glumipatulaOGLUM03G17370.158.710441.9683
AT5G08600arabidopsis_thalianaAT5G08600.259.171641.8935zea_maysZm00001eb016440_P00158.275141.2587
AT5G08600arabidopsis_thalianaAT5G08600.266.390547.929sesamum_indicumSIN_1017222.t49.29735.5888
AT5G08600arabidopsis_thalianaAT5G08600.260.473442.0118lolium_perennecds.KYUSt_chr3.2680157.805440.1584
AT5G08600arabidopsis_thalianaAT5G08600.252.07130.8876chara_brauniiGBG7492334.082120.2169
AT5G08600arabidopsis_thalianaAT5G08600.277.396465.3254arabis_alpinaKFK3083076.491264.5614
AT5G08600arabidopsis_thalianaAT5G08600.268.757455.1479brassica_junceacds.BjuA09g69180S73.637559.0621
AT5G08600arabidopsis_thalianaAT5G08600.274.911262.3669brassica_junceacds.BjuA02g17510S75.357162.7381
AT5G08600arabidopsis_thalianaAT5G08600.277.041463.0769brassica_junceacds.BjuB05g17780S76.678462.7797
AT5G08600arabidopsis_thalianaAT5G08600.261.893543.787oryza_brachyanthaOB03G26550.159.297141.9501
AT5G08600arabidopsis_thalianaAT5G08600.265.680546.6272glycine_maxKRG9645262.289644.22
AT5G08600arabidopsis_thalianaAT5G08600.265.088846.2722glycine_maxKRH6819961.936944.0315
AT5G08600arabidopsis_thalianaAT5G08600.230.414217.1598cyanidioschyzon_merolaeCMI018CT22.987512.9696
AT5G08600arabidopsis_thalianaAT5G08600.267.337350.4142corymbia_citriodoracds-KAF8006742.163.504547.5446
AT5G08600arabidopsis_thalianaAT5G08600.260.118342.2485aegilops_tauschiiAET7Gv20835700.456.950740.0224
AT5G08600arabidopsis_thalianaAT5G08600.260.591742.6035triticum_urartuTuG1812G0700003837.01.T0157.528140.4494
AT5G08600arabidopsis_thalianaAT5G08600.260.473443.0769oryza_longistaminataKN539223.1_FGP00842.654430.384
AT5G08600arabidopsis_thalianaAT5G08600.237.514827.8107fraxinus_excelsiorFRAEX38873_v2_000113150.1.cds62.896846.627
AT5G08600arabidopsis_thalianaAT5G08600.227.337319.0533fraxinus_excelsiorFRAEX38873_v2_000113160.1.cds63.461544.2308
AT5G08600arabidopsis_thalianaAT5G08600.260.35542.6035avena_sativa_sangAVESA.00010b.r2.4CG1287640.1.CDS57.627140.678
AT5G08600arabidopsis_thalianaAT5G08600.260.118342.7219avena_sativa_sangAVESA.00010b.r2.7DG1361420.1.CDS57.401140.791
AT5G08600arabidopsis_thalianaAT5G08600.240.946728.0473avena_sativa_sangAVESA.00010b.r2.7AG1246440.1.CDS53.810336.8585
AT5G08600arabidopsis_thalianaAT5G08600.262.958645.2071musa_acuminataMa09_p15720.160.11343.1638
AT5G08600arabidopsis_thalianaAT5G08600.261.065143.787oryza_glaberrimaORGLA03G0162100.158.37141.8552
AT5G08600arabidopsis_thalianaAT5G08600.260.118342.2485hordeum_vulgareHORVU.MOREX.r3.7HG0710080.157.078740.1124
AT5G08600arabidopsis_thalianaAT5G08600.260.591742.7219triticum_turgidumTRITD7Av1G185130.357.463540.5163
AT5G08600arabidopsis_thalianaAT5G08600.260.118342.2485triticum_turgidumTRITD7Bv1G135620.257.014640.0673
AT5G08600arabidopsis_thalianaAT5G08600.261.183442.7219panicum_halliiPUZ4115360.609642.3212
AT5G08600arabidopsis_thalianaAT5G08600.261.065142.1302echinochloa_crusgalliscaffold22.526.cds60.849141.9811
AT5G08600arabidopsis_thalianaAT5G08600.261.301842.0118echinochloa_crusgalliscaffold18.524.cds61.084941.8632
AT5G08600arabidopsis_thalianaAT5G08600.261.183442.2485echinochloa_crusgalliscaffold74.345.cds60.96742.0991
AT5G08600arabidopsis_thalianaAT5G08600.262.958646.0355actinidia_chinensisPSR8951963.484546.42
AT5G08600arabidopsis_thalianaAT5G08600.248.639133.7278actinidia_chinensisPSS0813161.069842.3477
AT5G08600arabidopsis_thalianaAT5G08600.268.402450.6509citrus_clementinaESR3613863.516547.033
AT5G08600arabidopsis_thalianaAT5G08600.261.538544.0237oryza_indicaBGIOSGA010714-PA58.823542.0814
AT5G08600arabidopsis_thalianaAT5G08600.218.224911.1243selaginella_moellendorffiiEFJ2576448.275929.4671
AT5G08600arabidopsis_thalianaAT5G08600.252.07132.071selaginella_moellendorffiiEFJ2576646.808528.8298
AT5G08600arabidopsis_thalianaAT5G08600.261.538544.0237oryza_sativaOs03t0343300-0158.823542.0814
AT5G08600arabidopsis_thalianaAT5G08600.233.017717.5148homo_sapiensENSP0000042861936.42319.3211
AT5G08600arabidopsis_thalianaAT5G08600.233.136118.4615homo_sapiensENSP0000037794436.316520.2335
AT5G08600arabidopsis_thalianaAT5G08600.26042.1302triticum_aestivumTraesCS7D02G334800.256.838639.9103
AT5G08600arabidopsis_thalianaAT5G08600.260.236742.2485triticum_aestivumTraesCS7B02G238400.157.126840.0673
AT5G08600arabidopsis_thalianaAT5G08600.260.473442.7219triticum_aestivumTraesCS7A02G344700.257.415740.5618
AT5G08600arabidopsis_thalianaAT5G08600.261.538544.0237oryza_rufipogonORUFI03G17540.258.823542.0814
AT5G08600arabidopsis_thalianaAT5G08600.260.118342.7219secale_cerealeSECCE7Rv1G0495740.157.142940.6074
AT5G08600arabidopsis_thalianaAT5G08600.214.911210.4142gossypium_raimondiiKJB4992270.391149.162
AT5G08600arabidopsis_thalianaAT5G08600.267.92950.0592gossypium_raimondiiKJB4989964.134147.2626
AT5G08600arabidopsis_thalianaAT5G08600.261.065143.9053oryza_punctataOPUNC03G16340.158.437142.0159
AT5G08600arabidopsis_thalianaAT5G08600.258.343240.9467eragrostis_tefEt_4A_032564.CDS60.939442.7689
AT5G08600arabidopsis_thalianaAT5G08600.261.656843.5503eragrostis_tefEt_4B_036750.CDS60.651942.8405
AT5G08600arabidopsis_thalianaAT5G08600.252.189434.4379medicago_truncatulaKEH2365364.852942.7941
AT5G08600arabidopsis_thalianaAT5G08600.227.92917.8698medicago_truncatulaAET0295661.618839.4256
AT5G08600arabidopsis_thalianaAT5G08600.261.893543.6686medicago_truncatulaAES8213558.76441.4607
AT5G08600arabidopsis_thalianaAT5G08600.257.869840medicago_truncatulaKEH3623458.633140.5276
AT5G08600arabidopsis_thalianaAT5G08600.259.171641.5385saccharum_spontaneumSspon.01G0009410-3D-mRNA-1:cds60.24142.2892
AT5G08600arabidopsis_thalianaAT5G08600.259.408341.4201sorghum_bicolorEER9487858.576440.8401
AT5G08600arabidopsis_thalianaAT5G08600.260.118342.3669triticum_dicoccoidesTRIDC7BG039260.157.014640.1796
AT5G08600arabidopsis_thalianaAT5G08600.260.591742.7219triticum_dicoccoidesTRIDC7AG048150.557.463540.5163
AT5G08600arabidopsis_thalianaAT5G08600.266.153848.7574coffea_canephoraCDP1712162.318845.9309
AT5G08600arabidopsis_thalianaAT5G08600.267.57449.7041manihot_esculentaOAY6183463.093946.4088
AT5G08600arabidopsis_thalianaAT5G08600.263.78743.6686kalanchoe_fedtschenkoiKaladp0039s0136.1.v1.158.650740.1523
AT5G08600arabidopsis_thalianaAT5G08600.261.420142.3669trifolium_pratenseTp57577_TGAC_v2_mRNA992860.13941.4832
AT5G08600arabidopsis_thalianaAT5G08600.277.278163.787brassica_rapa_ro18A02p033580.1_BraROA.176.19662.8938
AT5G08600arabidopsis_thalianaAT5G08600.223.313619.0533brassica_rapa_ro18A07g506340.1_BraROA.168.166155.7093
AT5G08600arabidopsis_thalianaAT5G08600.268.402456.0947brassica_rapa_ro18A09p001840.1_BraROA.173.818660.5364
AT5G08600arabidopsis_thalianaAT5G08600.266.272249.7041eucalyptus_grandisKCW5004862.222246.6667
AT5G08600arabidopsis_thalianaAT5G08600.228.875721.1834dioscorea_rotundataDRNTG_18203.168.347350.1401
AT5G08600arabidopsis_thalianaAT5G08600.213.846210.6509dioscorea_rotundataDRNTG_18204.167.630152.0231
AT5G08600arabidopsis_thalianaAT5G08600.264.970448.5207prunus_persicaONH939486145.5556
AT5G08600arabidopsis_thalianaAT5G08600.259.763342.4852avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0001893.154.594638.8108
AT5G08600arabidopsis_thalianaAT5G08600.260.118342.7219avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0002874.154.741438.9009
AT5G08600arabidopsis_thalianaAT5G08600.260.35542.6035avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0001733.257.627140.678
AT5G08600arabidopsis_thalianaAT5G08600.263.668645.5621chenopodium_quinoaAUR62026599-RA:cds59.844342.8254
AT5G08600arabidopsis_thalianaAT5G08600.260.828443.5503chenopodium_quinoaAUR62005314-RA:cds59.148442.3475
AT5G08600arabidopsis_thalianaAT5G08600.257.633140.5917digitaria_exilisDexi9B01G0034930.1:cds61.027642.9825
AT5G08600arabidopsis_thalianaAT5G08600.260.828442.7219digitaria_exilisDexi9A01G0036200.1:cds60.541842.5206
AT5G08600arabidopsis_thalianaAT5G08600.260.946743.787oryza_barthiiOBART03G16960.158.257941.8552
AT5G08600arabidopsis_thalianaAT5G08600.235.384628.1657brassica_oleraceaBo4g117070.170.685656.2648
AT5G08600arabidopsis_thalianaAT5G08600.250.650939.8817brassica_oleraceaBo9g005730.170.627155.6106
AT5G08600arabidopsis_thalianaAT5G08600.277.278164.497brassica_oleraceaBo2g100470.176.463763.8173
AT5G08600arabidopsis_thalianaAT5G08600.263.195347.3373prunus_dulcisVVA2523762.897547.1143
AT5G08600arabidopsis_thalianaAT5G08600.232.899418.3432galdieria_sulphurariaEME2670742.121223.4848
AT5G08600arabidopsis_thalianaAT5G08600.263.905346.7456corylus_avellanaCav02g14510.t162.717845.8769
AT5G08600arabidopsis_thalianaAT5G08600.261.656843.787leersia_perrieriLPERR03G14770.156.385340.0433
AT5G08600arabidopsis_thalianaAT5G08600.264.378746.3905nicotiana_attenuataOIT0708063.625745.848
AT5G08600arabidopsis_thalianaAT5G08600.267.57448.1657nicotiana_attenuataOIT0198463.798945.4749
AT5G08600arabidopsis_thalianaAT5G08600.28.75747.33728olea_europaeaOE9A002876C162.184952.1008
AT5G08600arabidopsis_thalianaAT5G08600.230.059220.7101olea_europaeaOE9A020659C261.501242.3729
AT5G08600arabidopsis_thalianaAT5G08600.29.940836.98225olea_europaeaOE9A076243C166.666746.8254
AT5G08600arabidopsis_thalianaAT5G08600.219.763313.7278olea_europaeaOE9A078818C156.802739.4558
AT5G08600arabidopsis_thalianaAT5G08600.243.313631.716olea_europaeaOE9A058086C164.323447.1002
AT5G08600arabidopsis_thalianaAT5G08600.234.911217.5148saccharomyces_cerevisiaeYML093W32.814216.4627
AT5G08600arabidopsis_thalianaAT5G08600.267.810750.4142pistacia_veracds-EVM0021313.162.080246.1538
AT5G08600arabidopsis_thalianaAT5G08600.221.893516.3314pistacia_veracds-EVM0023813.167.765650.5494
AT5G08600arabidopsis_thalianaAT5G08600.230.887614.4379drosophila_melanogasterFBpp007531733.852115.8236
AT5G08600arabidopsis_thalianaAT5G08600.276.094762.8402brassica_napusCDX9132676.547663.2143
AT5G08600arabidopsis_thalianaAT5G08600.238.343229.8225brassica_napusCDY5959668.354453.1646
AT5G08600arabidopsis_thalianaAT5G08600.217.988213.8462brassica_napusCDX8065465.236150.2146
AT5G08600arabidopsis_thalianaAT5G08600.268.757455.6213brassica_napusCDY2204775.552761.1183
AT5G08600arabidopsis_thalianaAT5G08600.216.923113.8462brassica_napusCDX6955268.7556.25
AT5G08600arabidopsis_thalianaAT5G08600.234.556227.4556brassica_napusCDY0993967.90753.9535
AT5G08600arabidopsis_thalianaAT5G08600.275.50363.0769brassica_napusCDY5536875.952463.4524
AT5G08600arabidopsis_thalianaAT5G08600.250.650939.8817brassica_napusCDY5038970.627155.6106
AT5G08600arabidopsis_thalianaAT5G08600.268.402450.5325corchorus_capsularisOMO6386664.079847.3392
AT5G08600arabidopsis_thalianaAT5G08600.261.301843.5503oryza_meridionalisOMERI03G15100.158.597341.629
AT5G08600arabidopsis_thalianaAT5G08600.268.757460.7101camelina_sativaCsa13g010730.182.528472.8693
AT5G08600arabidopsis_thalianaAT5G08600.269.585861.3018camelina_sativaCsa20g012160.183.286173.3711
AT5G08600arabidopsis_thalianaAT5G08600.270.295962.8402camelina_sativaCsa08g055620.181.481572.8395
AT5G08600arabidopsis_thalianaAT5G08600.263.076946.5089malus_domestica_goldenmRNA:MD03G023710058.765243.3297
AT5G08600arabidopsis_thalianaAT5G08600.262.011845.0888malus_domestica_goldenmRNA:MD11G025380059.00942.9054
AT5G08600arabidopsis_thalianaAT5G08600.261.420145.2071daucus_carotaKZM9739963.3746.6422
AT5G08600arabidopsis_thalianaAT5G08600.264.14245.7988rosa_chinensisPRQ2639860.626443.2886
AT5G08600arabidopsis_thalianaAT5G08600.267.100648.5207juglans_regiacds.Jr11_14940_p161.16544.2287
AT5G08600arabidopsis_thalianaAT5G08600.248.520732.7811nymphaea_colorataNC5G0266890.1:cds46.327731.2994
AT5G08600arabidopsis_thalianaAT5G08600.260.236742.7219setaria_italicaKQK9094960.165542.6714
AT5G08600arabidopsis_thalianaAT5G08600.252.899433.8462physcomitrium_patensPp3c9_17240V3.244.789628.6573
AT5G08600arabidopsis_thalianaAT5G08600.267.455649.8225vitis_viniferaVitvi07g00336_P00163.687147.0391
AT5G08600arabidopsis_thalianaAT5G08600.262.248545.7988cynara_cardunculusKVI0399662.396245.9075

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003674enables molecular_function1NDArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0006364involved_in rRNA processing1IEAArabidopsis_thaliana(3702)Process
GO:0044283acts_upstream_of_or_within small molecule biosynthetic process1IEAArabidopsis_thaliana(3702)Process

Expression