RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AT4G15000	Gene ID	827159	Accession	-
Symbol	AT4G15000	Alias	-	Full Name	Ribosomal L27e protein family
Status	Confidence	Length	866 bases	Strand	Plus strand
Position	4 : 8571816 - 8572681	RNA binding domain	Ribosomal_L27e
Summary	N.A.

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
AT4G15000	Ribosomal_L27e	PF01777	3.3e-31	1
AT4G15000	Ribosomal_L27e	PF01777	1.3e-22	2

Showing 1 to 2 of 2 entries

RNA binding proteomes (RBPomes)

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Pubmed ID	Full Name	Cell	Author	Time	Doi
27405932	PMID27405932_At	-	Claudius Marondedze	2016 Jul 11	doi: 10.1038/srep29766
27729395	PMID27729395_At	-	Marlene Reichel	2016 Oct	doi: 10.1105/tpc.16.00562.Epub 2016 Oct 11
27822292	PMID27822292_At	-	Zhicheng Zhang	2016 Nov 3	doi: 10.1186/s13007-016-0142-6.eCollection 2016
32344669	PMID32344669_At	-	Marcel Bach-Pages	2020 Apr 24	doi: 10.3390/biom10040661
37144845	PMID37144845_At	-	Yong Zhang	2023 Aug 2	doi: 10.1093/plcell/koad124

Showing 1 to 5 of 5 entries

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Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
AT4G15000-201	AT4G15000	866	135aa	AT4G15000

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Gene Model

Click here to download AT4G15000's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download AT4G15000's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AT4G15000	arabidopsis_thaliana	AT3G22230.1	97.037	96.2963	arabidopsis_thaliana	AT4G15000.1	97.037	96.2963
AT4G15000	arabidopsis_thaliana	AT2G32220.1	89.6296	82.2222	arabidopsis_thaliana	AT4G15000.1	89.6296	82.2222

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Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AT4G15000	arabidopsis_thaliana	AT4G15000.1	68.8889	51.1111	chondrus_crispus	CDF33494	64.5833	47.9167
AT4G15000	arabidopsis_thaliana	AT4G15000.1	76.2963	65.1852	chlamydomonas_reinhardtii	PNW70002	76.2963	65.1852
AT4G15000	arabidopsis_thaliana	AT4G15000.1	81.4815	70.3704	marchantia_polymorpha	PTQ44517	81.4815	70.3704
AT4G15000	arabidopsis_thaliana	AT4G15000.1	87.4074	78.5185	papaver_somniferum	RZC48260	17.6119	15.8209
AT4G15000	arabidopsis_thaliana	AT4G15000.1	77.037	66.6667	papaver_somniferum	RZC61129	83.2	72
AT4G15000	arabidopsis_thaliana	AT4G15000.1	89.6296	80	papaver_somniferum	RZC45784	89.6296	80
AT4G15000	arabidopsis_thaliana	AT4G15000.1	69.6296	64.4444	cannabis_sativa_female	cds.evm.model.06.36	93.0693	86.1386
AT4G15000	arabidopsis_thaliana	AT4G15000.1	51.1111	44.4444	cannabis_sativa_female	cds.evm.model.02.1446	67.6471	58.8235
AT4G15000	arabidopsis_thaliana	AT4G15000.1	93.3333	86.6667	cannabis_sativa_female	cds.evm.model.04.46	93.3333	86.6667
AT4G15000	arabidopsis_thaliana	AT4G15000.1	45.1852	40.7407	cannabis_sativa_female	cds.evm.model.02.1514	51.2605	46.2185

Showing 1 to 10 of 271 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005829	located_in cytosol	2	HDA,RCA	Arabidopsis_thaliana(3702)	Component
GO:0003729	enables mRNA binding	1	IDA	Arabidopsis_thaliana(3702)	Function
GO:0003735	enables structural constituent of ribosome	1	IEA	Arabidopsis_thaliana(3702)	Function
GO:0005737	located_in cytoplasm	1	ISM	Arabidopsis_thaliana(3702)	Component
GO:0006412	involved_in translation	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0022625	part_of cytosolic large ribosomal subunit	1	HDA	Arabidopsis_thaliana(3702)	Component
GO:0022626	located_in cytosolic ribosome	1	HDA	Arabidopsis_thaliana(3702)	Component
GO:0044085	acts_upstream_of_or_within cellular component biogenesis	1	IEA	Arabidopsis_thaliana(3702)	Process

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression