Description

Ensembl ID AT4G07950 Gene ID 826299 Accession -
Symbol AT4G07950 Alias - Full Name DNA-directed RNA polymerase, subunit M, archaeal
Status Confidence Length 1955 bases Strand Plus strand
Position 4 : 4797841 - 4799795 RNA binding domain RNA_POL_M_15KD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT4G07950 RNA_POL_M_15KD PF02150 1.1e-08 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT4G07950-201 AT4G07950 940 106aa AT4G07950

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT4G07950arabidopsis_thalianaAT4G16265.230.075217.2932arabidopsis_thalianaAT4G07950.137.735821.6981
AT4G07950arabidopsis_thalianaAT3G16980.139.473723.6842arabidopsis_thalianaAT4G07950.142.452825.4717
AT4G07950arabidopsis_thalianaAT3G25940.136.974822.6891arabidopsis_thalianaAT4G07950.141.509425.4717
AT4G07950arabidopsis_thalianaAT1G01210.398.113295.283arabidopsis_thalianaAT4G07950.198.113295.283

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT4G07950arabidopsis_thalianaAT4G07950.147.169831.1321chlamydomonas_reinhardtiiPNW8694645.871630.2752
AT4G07950arabidopsis_thalianaAT4G07950.15039.6226marchantia_polymorphaPTQ3227648.181838.1818
AT4G07950arabidopsis_thalianaAT4G07950.166.981151.8868papaver_somniferumRZC7356164.545550
AT4G07950arabidopsis_thalianaAT4G07950.166.981151.8868papaver_somniferumRZC7356364.545550
AT4G07950arabidopsis_thalianaAT4G07950.166.981151.8868papaver_somniferumRZC7355864.545550
AT4G07950arabidopsis_thalianaAT4G07950.175.471758.4906cannabis_sativa_femalecds.evm.model.02.173272.727356.3636
AT4G07950arabidopsis_thalianaAT4G07950.173.584959.434ficus_caricaFCD_00022016-RA:cds70.909157.2727
AT4G07950arabidopsis_thalianaAT4G07950.175.471760.3774theobroma_cacaoEOX9564771.428657.1429
AT4G07950arabidopsis_thalianaAT4G07950.153.773640.566beta_vulgarisKMT1040961.290346.2366
AT4G07950arabidopsis_thalianaAT4G07950.177.358559.434cucumis_meloMELO3C026899.2.173.873956.7568
AT4G07950arabidopsis_thalianaAT4G07950.177.358559.434cucumis_sativusKGN5977073.873956.7568
AT4G07950arabidopsis_thalianaAT4G07950.174.528360.3774populus_trichocarpaPotri.012G015900.1.v4.170.535757.1429
AT4G07950arabidopsis_thalianaAT4G07950.170.754750solanum_lycopersicumSolyc05g055890.3.167.567647.7477
AT4G07950arabidopsis_thalianaAT4G07950.138.679229.2453caenorhabditis_elegansY77E11A.6a.137.96328.7037
AT4G07950arabidopsis_thalianaAT4G07950.173.584955.6604lactuca_sativacds-PLY77486.170.909153.6364
AT4G07950arabidopsis_thalianaAT4G07950.150.943436.7925ostreococcus_lucimarinusABO953034532.5
AT4G07950arabidopsis_thalianaAT4G07950.162.264251.8868eragrostis_curvulaTVU2796861.111150.9259
AT4G07950arabidopsis_thalianaAT4G07950.178.301960.3774citrullus_lanatusCla97C10G196060.174.774857.6577
AT4G07950arabidopsis_thalianaAT4G07950.162.264247.1698amborella_trichopodaERN192456045.4545
AT4G07950arabidopsis_thalianaAT4G07950.176.415161.3208vigna_unguiculataVigun05g120700.1.v1.272.97358.5586
AT4G07950arabidopsis_thalianaAT4G07950.173.584953.7736prunus_aviumPav_sc0000586.1_g580.1.mk:mrna70.270351.3514
AT4G07950arabidopsis_thalianaAT4G07950.174.528362.2642phaseolus_vulgarisESW1229971.171259.4595
AT4G07950arabidopsis_thalianaAT4G07950.166.037746.2264asparagus_officinalisONK7950550.724635.5072
AT4G07950arabidopsis_thalianaAT4G07950.175.471757.5472pisum_sativumPsat3g005240.1.cds72.072154.955
AT4G07950arabidopsis_thalianaAT4G07950.166.037750.9434quercus_subercds-POE88494.168.627452.9412
AT4G07950arabidopsis_thalianaAT4G07950.198.113294.3396arabidopsis_lyratafgenesh1_pm.C_scaffold_100009398.113294.3396
AT4G07950arabidopsis_thalianaAT4G07950.170.754751.8868capsicum_annuumPHT8252067.567649.5495
AT4G07950arabidopsis_thalianaAT4G07950.192.452887.7358eutrema_salsugineumESQ3675295.145690.2913
AT4G07950arabidopsis_thalianaAT4G07950.198.113296.2264arabidopsis_hallerig01807.t198.113296.2264
AT4G07950arabidopsis_thalianaAT4G07950.166.981152.8302cajanus_cajanC.cajan_43660.t66.981152.8302
AT4G07950arabidopsis_thalianaAT4G07950.170.754750solanum_tuberosumPGSC0003DMT40006032867.567647.7477
AT4G07950arabidopsis_thalianaAT4G07950.166.037750.9434setaria_viridisTKW4085663.636449.0909
AT4G07950arabidopsis_thalianaAT4G07950.166.037751.8868oryza_nivaraONIVA02G30360.166.037751.8868
AT4G07950arabidopsis_thalianaAT4G07950.170.754751.8868ipomoea_trilobaitb02g04560.t168.807350.4587
AT4G07950arabidopsis_thalianaAT4G07950.169.811351.8868oryza_glumipatulaOGLUM02G28050.156.060641.6667
AT4G07950arabidopsis_thalianaAT4G07950.163.207550.9434zea_maysZm00001eb187060_P00160.909149.0909
AT4G07950arabidopsis_thalianaAT4G07950.164.150951.8868sesamum_indicumSIN_1008681.t61.818250
AT4G07950arabidopsis_thalianaAT4G07950.147.169831.1321chara_brauniiGBG8085332.467521.4286
AT4G07950arabidopsis_thalianaAT4G07950.152.830233.9623chara_brauniiGBG8967041.79126.8657
AT4G07950arabidopsis_thalianaAT4G07950.189.622682.0755arabis_alpinaKFK4250792.23384.466
AT4G07950arabidopsis_thalianaAT4G07950.143.396233.0189ciona_savignyiENSCSAVP0000001407342.592632.4074
AT4G07950arabidopsis_thalianaAT4G07950.189.622683.9623brassica_junceacds.BjuA09g26030S92.23386.4078
AT4G07950arabidopsis_thalianaAT4G07950.188.679281.1321brassica_junceacds.BjuB02g00660S91.262183.4951
AT4G07950arabidopsis_thalianaAT4G07950.188.679283.0189brassica_junceacds.BjuA03g48480S91.262185.4369
AT4G07950arabidopsis_thalianaAT4G07950.167.924552.8302oryza_brachyanthaOB02G34910.165.454550.9091
AT4G07950arabidopsis_thalianaAT4G07950.175.471765.0943glycine_maxKRH4908772.072162.1622
AT4G07950arabidopsis_thalianaAT4G07950.175.471763.2075glycine_maxKRG9991472.072160.3604
AT4G07950arabidopsis_thalianaAT4G07950.173.584955.6604corymbia_citriodoracds-KAF8029789.169.642952.6786
AT4G07950arabidopsis_thalianaAT4G07950.173.584955.6604corymbia_citriodoracds-KAF7847772.169.642952.6786
AT4G07950arabidopsis_thalianaAT4G07950.169.811354.717fraxinus_excelsiorFRAEX38873_v2_000339940.1.cds66.666752.2523
AT4G07950arabidopsis_thalianaAT4G07950.169.811354.717fraxinus_excelsiorFRAEX38873_v2_000321800.1.cds66.666752.2523
AT4G07950arabidopsis_thalianaAT4G07950.162.264249.0566musa_acuminataMa06_p00100.164.077750.4854
AT4G07950arabidopsis_thalianaAT4G07950.165.094350musa_acuminataMa04_p36980.162.727348.1818
AT4G07950arabidopsis_thalianaAT4G07950.168.867951.8868oryza_glaberrimaORGLA02G0237100.166.363650
AT4G07950arabidopsis_thalianaAT4G07950.166.037749.0566panicum_halliiPUZ7701663.636447.2727
AT4G07950arabidopsis_thalianaAT4G07950.166.037750.9434echinochloa_crusgalliscaffold2.831.cds63.636449.0909
AT4G07950arabidopsis_thalianaAT4G07950.166.037750.9434echinochloa_crusgalliscaffold108.121.cds63.636449.0909
AT4G07950arabidopsis_thalianaAT4G07950.166.037750.9434echinochloa_crusgalliscaffold46.224.cds63.636449.0909
AT4G07950arabidopsis_thalianaAT4G07950.172.641560.3774actinidia_chinensisPSS2351869.369457.6577
AT4G07950arabidopsis_thalianaAT4G07950.165.094351.8868citrus_clementinaESR5803562.727350
AT4G07950arabidopsis_thalianaAT4G07950.166.037751.8868oryza_indicaBGIOSGA008792-PA66.037751.8868
AT4G07950arabidopsis_thalianaAT4G07950.144.339632.0755selaginella_moellendorffiiEFJ3216343.925231.7757
AT4G07950arabidopsis_thalianaAT4G07950.144.339632.0755selaginella_moellendorffiiEFJ1682343.925231.7757
AT4G07950arabidopsis_thalianaAT4G07950.142.452833.0189selaginella_moellendorffiiEFJ0535842.056132.7103
AT4G07950arabidopsis_thalianaAT4G07950.168.867951.8868oryza_sativaOs02t0672700-0166.363650
AT4G07950arabidopsis_thalianaAT4G07950.141.509428.3019homo_sapiensENSP0000029386040.740727.7778
AT4G07950arabidopsis_thalianaAT4G07950.166.037751.8868oryza_rufipogonORUFI02G28970.129.535923.2068
AT4G07950arabidopsis_thalianaAT4G07950.177.358560.3774gossypium_raimondiiKJB5305274.545558.1818
AT4G07950arabidopsis_thalianaAT4G07950.177.358561.3208gossypium_raimondiiKJB2454674.545559.0909
AT4G07950arabidopsis_thalianaAT4G07950.173.584955.6604helianthus_annuusmRNA:HanXRQr2_Chr17g082183170.909153.6364
AT4G07950arabidopsis_thalianaAT4G07950.173.584955.6604helianthus_annuusmRNA:HanXRQr2_Chr05g019446170.909153.6364
AT4G07950arabidopsis_thalianaAT4G07950.166.037752.8302oryza_punctataOPUNC02G25210.166.037752.8302
AT4G07950arabidopsis_thalianaAT4G07950.163.207550.9434eragrostis_tefEt_1B_013190.CDS42.138433.9623
AT4G07950arabidopsis_thalianaAT4G07950.161.320850eragrostis_tefEt_1A_008358.CDS60.185249.0741
AT4G07950arabidopsis_thalianaAT4G07950.166.981146.2264medicago_truncatulaKEH2770755.468838.2812
AT4G07950arabidopsis_thalianaAT4G07950.168.867946.2264medicago_truncatulaAES8273462.393241.8803
AT4G07950arabidopsis_thalianaAT4G07950.155.660445.283saccharum_spontaneumSspon.04G0023690-1B-mRNA-1:cds61.458350
AT4G07950arabidopsis_thalianaAT4G07950.164.150950.9434saccharum_spontaneumSspon.04G0006570-1A-mRNA-1:cds61.818249.0909
AT4G07950arabidopsis_thalianaAT4G07950.164.150950.9434sorghum_bicolorKXG3102261.818249.0909
AT4G07950arabidopsis_thalianaAT4G07950.171.698156.6038coffea_canephoraCDP1166369.090954.5455
AT4G07950arabidopsis_thalianaAT4G07950.171.698155.6604coffea_canephoraCDP1765569.090953.6364
AT4G07950arabidopsis_thalianaAT4G07950.173.584961.3208manihot_esculentaOAY6212669.642958.0357
AT4G07950arabidopsis_thalianaAT4G07950.165.094343.3962kalanchoe_fedtschenkoiKaladp0055s0519.1.v1.164.48642.9907
AT4G07950arabidopsis_thalianaAT4G07950.166.981147.1698kalanchoe_fedtschenkoiKaladp0049s0040.1.v1.166.355146.729
AT4G07950arabidopsis_thalianaAT4G07950.170.754754.717trifolium_pratenseTp57577_TGAC_v2_mRNA497270.093554.2056
AT4G07950arabidopsis_thalianaAT4G07950.189.622684.9057brassica_rapa_ro18A09p050500.1_BraROA.192.23387.3786
AT4G07950arabidopsis_thalianaAT4G07950.173.584957.5472eucalyptus_grandisKCW7471769.642954.4643
AT4G07950arabidopsis_thalianaAT4G07950.173.584957.5472eucalyptus_grandisKCW4470969.642954.4643
AT4G07950arabidopsis_thalianaAT4G07950.173.584957.5472eucalyptus_grandisKCW7471469.642954.4643
AT4G07950arabidopsis_thalianaAT4G07950.173.584957.5472eucalyptus_grandisKCW7471669.642954.4643
AT4G07950arabidopsis_thalianaAT4G07950.169.811355.6604dioscorea_rotundataDRNTG_31314.167.272753.6364
AT4G07950arabidopsis_thalianaAT4G07950.173.584953.7736prunus_persicaONI2352370.270351.3514
AT4G07950arabidopsis_thalianaAT4G07950.167.924551.8868digitaria_exilisDexi1B01G0022050.1:cds65.454550
AT4G07950arabidopsis_thalianaAT4G07950.167.924551.8868digitaria_exilisDexi1A01G0023080.1:cds65.454550
AT4G07950arabidopsis_thalianaAT4G07950.166.037751.8868oryza_barthiiOBART02G27520.166.037751.8868
AT4G07950arabidopsis_thalianaAT4G07950.188.679283.0189brassica_oleraceaBo3g017400.191.262185.4369
AT4G07950arabidopsis_thalianaAT4G07950.173.584953.7736prunus_dulcisVVA2551270.270351.3514
AT4G07950arabidopsis_thalianaAT4G07950.145.28336.7925galdieria_sulphurariaEME2815644.859836.4486
AT4G07950arabidopsis_thalianaAT4G07950.171.698152.8302nicotiana_attenuataOIT0334768.468550.4505
AT4G07950arabidopsis_thalianaAT4G07950.169.811353.7736olea_europaeaOE9A014069C166.666751.3514
AT4G07950arabidopsis_thalianaAT4G07950.169.811352.8302olea_europaeaOE9A041135C266.666750.4505
AT4G07950arabidopsis_thalianaAT4G07950.142.452828.3019saccharomyces_cerevisiaeYDR045C40.909127.2727
AT4G07950arabidopsis_thalianaAT4G07950.166.981151.8868pistacia_veracds-EVM0016449.164.545550
AT4G07950arabidopsis_thalianaAT4G07950.143.396233.0189drosophila_melanogasterFBpp008556342.592632.4074
AT4G07950arabidopsis_thalianaAT4G07950.189.622683.9623brassica_napusCDY6799556.547652.9762
AT4G07950arabidopsis_thalianaAT4G07950.188.679283.0189brassica_napusCDY6737391.262185.4369
AT4G07950arabidopsis_thalianaAT4G07950.189.622683.9623brassica_napusCDY6037192.23386.4078
AT4G07950arabidopsis_thalianaAT4G07950.189.622683.9623brassica_napusCDY3799652.777849.4444
AT4G07950arabidopsis_thalianaAT4G07950.189.622683.9623brassica_napusCDX8875692.23386.4078
AT4G07950arabidopsis_thalianaAT4G07950.178.301961.3208corchorus_capsularisOMO6425275.454559.0909
AT4G07950arabidopsis_thalianaAT4G07950.166.037751.8868oryza_meridionalisOMERI02G26800.166.037751.8868
AT4G07950arabidopsis_thalianaAT4G07950.198.113293.3962camelina_sativaCsa14g001950.198.113293.3962
AT4G07950arabidopsis_thalianaAT4G07950.199.056694.3396camelina_sativaCsa03g002020.199.056694.3396
AT4G07950arabidopsis_thalianaAT4G07950.197.169893.3962camelina_sativaCsa17g001680.197.169893.3962
AT4G07950arabidopsis_thalianaAT4G07950.175.471757.5472malus_domestica_goldenmRNA:MD01G006580072.072154.955
AT4G07950arabidopsis_thalianaAT4G07950.170.754751.8868rosa_chinensisPRQ5854467.567649.5495
AT4G07950arabidopsis_thalianaAT4G07950.176.415161.3208juglans_regiacds.Jr12_05530_p172.97358.5586
AT4G07950arabidopsis_thalianaAT4G07950.160.377447.1698nymphaea_colorataNC10G0162210.1:cds57.657745.045
AT4G07950arabidopsis_thalianaAT4G07950.166.037750.9434setaria_italicaKQL3090463.636449.0909
AT4G07950arabidopsis_thalianaAT4G07950.144.339633.9623physcomitrium_patensPp3c15_5550V3.442.727332.7273
AT4G07950arabidopsis_thalianaAT4G07950.171.698159.434vitis_viniferaVitvi15g00930_P00368.468556.7568
AT4G07950arabidopsis_thalianaAT4G07950.171.698156.6038cynara_cardunculusKVH9730269.090954.5455

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003676enables nucleic acid binding1IEAArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus2HDA,ISMArabidopsis_thaliana(3702)Component
GO:0005737located_in cytoplasm1HDAArabidopsis_thaliana(3702)Component
GO:0006355involved_in regulation of DNA-templated transcription1IEAArabidopsis_thaliana(3702)Process
GO:0008270enables zinc ion binding1IEAArabidopsis_thaliana(3702)Function
GO:0042780involved_in tRNA 3-end processing1IEAArabidopsis_thaliana(3702)Process

Expression