Description

Ensembl ID AT4G02400 Gene ID 828039 Accession -
Symbol AT4G02400 Alias - Full Name U3 ribonucleoprotein (Utp) family protein
Status Confidence Length 3800 bases Strand Plus strand
Position 4 : 1054199 - 1057998 RNA binding domain Utp14
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT4G02400 Utp14 PF04615 5.4e-178 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT4G02400-201 AT4G02400 2726 855aa AT4G02400

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT4G02400arabidopsis_thalianaAT5G08600.278.579967.929arabidopsis_thalianaAT4G02400.177.660867.1345

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT4G02400arabidopsis_thalianaAT4G02400.128.65515.6725chondrus_crispusCDF3586631.2517.0918
AT4G02400arabidopsis_thalianaAT4G02400.135.789522.4561chlamydomonas_reinhardtiiPNW7685228.922518.1474
AT4G02400arabidopsis_thalianaAT4G02400.142.222227.6023chlamydomonas_reinhardtiiPNW7685129.859419.5203
AT4G02400arabidopsis_thalianaAT4G02400.154.035136.1404marchantia_polymorphaPTQ4607342.307728.2967
AT4G02400arabidopsis_thalianaAT4G02400.139.298226.3158papaver_somniferumRZC7316455.81437.3754
AT4G02400arabidopsis_thalianaAT4G02400.169.239851.5789papaver_somniferumRZC6770364.841248.3023
AT4G02400arabidopsis_thalianaAT4G02400.123.976617.076papaver_somniferumRZC5285860.294142.9412
AT4G02400arabidopsis_thalianaAT4G02400.158.947444.3275papaver_somniferumRZC5769363.716847.914
AT4G02400arabidopsis_thalianaAT4G02400.169.941552.8655cannabis_sativa_femalecds.evm.model.01.79066.370750.1665
AT4G02400arabidopsis_thalianaAT4G02400.170.175453.0994ficus_caricaFCD_00009404-RA:cds64.864949.0811
AT4G02400arabidopsis_thalianaAT4G02400.171.228154.6199theobroma_cacaoEOX9510667.367351.6593
AT4G02400arabidopsis_thalianaAT4G02400.164.093647.1345beta_vulgarisKMT0243166.747949.0865
AT4G02400arabidopsis_thalianaAT4G02400.170.292450.6433cucumis_meloMELO3C015997.2.166.482347.8982
AT4G02400arabidopsis_thalianaAT4G02400.169.941550.1754cucumis_sativusKGN4494566.150447.4558
AT4G02400arabidopsis_thalianaAT4G02400.169.824650.4094populus_trichocarpaPotri.014G128300.1.v4.166.259747.8357
AT4G02400arabidopsis_thalianaAT4G02400.169.707650.5263populus_trichocarpaPotri.002G203700.2.v4.166.222248
AT4G02400arabidopsis_thalianaAT4G02400.170.058552.5146solanum_lycopersicumSolyc09g005760.3.167.077350.28
AT4G02400arabidopsis_thalianaAT4G02400.128.65514.269caenorhabditis_elegansF27C1.6.137.867118.8563
AT4G02400arabidopsis_thalianaAT4G02400.165.61447.7193lactuca_sativacds-PLY85712.167.50949.0975
AT4G02400arabidopsis_thalianaAT4G02400.142.339226.1988ostreococcus_lucimarinusABO9544750.069230.982
AT4G02400arabidopsis_thalianaAT4G02400.162.456145.0292eragrostis_curvulaTVU4710556.86941.0011
AT4G02400arabidopsis_thalianaAT4G02400.169.356750.6433citrullus_lanatusCla97C09G168320.165.524947.8453
AT4G02400arabidopsis_thalianaAT4G02400.162.92444.9123amborella_trichopodaERM9712162.41344.5476
AT4G02400arabidopsis_thalianaAT4G02400.169.356752.1637vigna_unguiculataVigun01g192200.1.v1.267.386450.6818
AT4G02400arabidopsis_thalianaAT4G02400.159.415244.7953phaseolus_vulgarisESW3511169.115652.1088
AT4G02400arabidopsis_thalianaAT4G02400.167.134550.5263asparagus_officinalisONK6291565.005748.9241
AT4G02400arabidopsis_thalianaAT4G02400.165.61446.7836pisum_sativumPsat3g021720.1.cds64.55746.0299
AT4G02400arabidopsis_thalianaAT4G02400.161.871344.6784brachypodium_distachyonKQK2175260.526343.7071
AT4G02400arabidopsis_thalianaAT4G02400.171.34554.9708quercus_subercds-POE75310.166.304351.087
AT4G02400arabidopsis_thalianaAT4G02400.163.625744.4444ananas_comosusAco001850.1.mrna163.182344.1347
AT4G02400arabidopsis_thalianaAT4G02400.195.789592.9825arabidopsis_lyratafgenesh2_kg.6__3463__AT4G02400.194.463791.6955
AT4G02400arabidopsis_thalianaAT4G02400.170.994154.7368quercus_lobataQL12p028379:mrna66.194151.036
AT4G02400arabidopsis_thalianaAT4G02400.170.058551.9298capsicum_annuumPHT7209867.077349.72
AT4G02400arabidopsis_thalianaAT4G02400.159.649144.3275lupinus_angustifoliusOIV9537768.364650.8043
AT4G02400arabidopsis_thalianaAT4G02400.167.836349.7076lupinus_angustifoliusOIV9537665.536748.0226
AT4G02400arabidopsis_thalianaAT4G02400.178.362669.4737eutrema_salsugineumESQ4039683.854874.3429
AT4G02400arabidopsis_thalianaAT4G02400.184.444474.5029eutrema_salsugineumESQ3790084.841474.8531
AT4G02400arabidopsis_thalianaAT4G02400.170.643350.7602cajanus_cajanC.cajan_25045.t68.403249.1506
AT4G02400arabidopsis_thalianaAT4G02400.170.292452.3977solanum_tuberosumPGSC0003DMT40006143367.528150.3371
AT4G02400arabidopsis_thalianaAT4G02400.163.157945.1462setaria_viridisTKV9618863.679245.5189
AT4G02400arabidopsis_thalianaAT4G02400.163.859647.2515oryza_nivaraONIVA03G17970.161.764745.7014
AT4G02400arabidopsis_thalianaAT4G02400.167.953249.0058ipomoea_trilobaitb13g25980.t141.858830.1873
AT4G02400arabidopsis_thalianaAT4G02400.163.859647.2515oryza_glumipatulaOGLUM03G17370.161.764745.7014
AT4G02400arabidopsis_thalianaAT4G02400.162.80745.0292zea_maysZm00001eb016440_P00162.587444.8718
AT4G02400arabidopsis_thalianaAT4G02400.169.941552.2807sesamum_indicumSIN_1017222.t52.548339.2794
AT4G02400arabidopsis_thalianaAT4G02400.163.508844.4444lolium_perennecds.KYUSt_chr3.2680161.425342.9864
AT4G02400arabidopsis_thalianaAT4G02400.154.853834.386chara_brauniiGBG7492336.328422.773
AT4G02400arabidopsis_thalianaAT4G02400.184.561474.5029arabis_alpinaKFK3083084.561474.5029
AT4G02400arabidopsis_thalianaAT4G02400.174.970864.2105brassica_junceacds.BjuA09g69180S81.242169.5817
AT4G02400arabidopsis_thalianaAT4G02400.182.456171.9298brassica_junceacds.BjuA02g17510S83.928673.2143
AT4G02400arabidopsis_thalianaAT4G02400.184.444473.9181brassica_junceacds.BjuB05g17780S85.041274.4405
AT4G02400arabidopsis_thalianaAT4G02400.163.859647.7193oryza_brachyanthaOB03G26550.161.904846.2585
AT4G02400arabidopsis_thalianaAT4G02400.169.941551.6959glycine_maxKRG9645267.115649.6072
AT4G02400arabidopsis_thalianaAT4G02400.169.356751.345glycine_maxKRH6819966.779349.4369
AT4G02400arabidopsis_thalianaAT4G02400.130.994216.8421cyanidioschyzon_merolaeCMI018CT23.70312.8801
AT4G02400arabidopsis_thalianaAT4G02400.172.865556.4912corymbia_citriodoracds-KAF8006742.169.531253.9062
AT4G02400arabidopsis_thalianaAT4G02400.163.274944.7953aegilops_tauschiiAET7Gv20835700.460.650242.9372
AT4G02400arabidopsis_thalianaAT4G02400.163.742745.2632triticum_urartuTuG1812G0700003837.01.T0161.23643.4831
AT4G02400arabidopsis_thalianaAT4G02400.163.391847.0175oryza_longistaminataKN539223.1_FGP00845.242133.5559
AT4G02400arabidopsis_thalianaAT4G02400.139.649130.4094fraxinus_excelsiorFRAEX38873_v2_000113150.1.cds67.261951.5873
AT4G02400arabidopsis_thalianaAT4G02400.128.421120.7018fraxinus_excelsiorFRAEX38873_v2_000113160.1.cds66.758248.6264
AT4G02400arabidopsis_thalianaAT4G02400.164.093645.731avena_sativa_sangAVESA.00010b.r2.4CG1287640.1.CDS61.920944.1808
AT4G02400arabidopsis_thalianaAT4G02400.163.859645.614avena_sativa_sangAVESA.00010b.r2.7DG1361420.1.CDS61.694944.0678
AT4G02400arabidopsis_thalianaAT4G02400.143.859630.5263avena_sativa_sangAVESA.00010b.r2.7AG1246440.1.CDS58.320440.591
AT4G02400arabidopsis_thalianaAT4G02400.167.134549.7076musa_acuminataMa09_p15720.164.858848.0226
AT4G02400arabidopsis_thalianaAT4G02400.163.742747.4854oryza_glaberrimaORGLA03G0162100.161.651645.9276
AT4G02400arabidopsis_thalianaAT4G02400.163.157944.4444hordeum_vulgareHORVU.MOREX.r3.7HG0710080.160.674242.6966
AT4G02400arabidopsis_thalianaAT4G02400.163.625745.3801triticum_turgidumTRITD7Av1G185130.361.05543.5466
AT4G02400arabidopsis_thalianaAT4G02400.163.625744.9123triticum_turgidumTRITD7Bv1G135620.261.05543.0976
AT4G02400arabidopsis_thalianaAT4G02400.163.625745.2632panicum_halliiPUZ4115363.774945.3693
AT4G02400arabidopsis_thalianaAT4G02400.163.274945.3801echinochloa_crusgalliscaffold22.526.cds63.797245.7547
AT4G02400arabidopsis_thalianaAT4G02400.163.391845.731echinochloa_crusgalliscaffold18.524.cds63.915146.1085
AT4G02400arabidopsis_thalianaAT4G02400.163.859645.9649echinochloa_crusgalliscaffold74.345.cds64.386846.3443
AT4G02400arabidopsis_thalianaAT4G02400.165.380148.655actinidia_chinensisPSR8951966.706449.642
AT4G02400arabidopsis_thalianaAT4G02400.150.994237.4269actinidia_chinensisPSS0813164.784547.5483
AT4G02400arabidopsis_thalianaAT4G02400.173.333354.8538citrus_clementinaESR3613868.901151.5385
AT4G02400arabidopsis_thalianaAT4G02400.163.976647.3684oryza_indicaBGIOSGA010714-PA61.877845.8145
AT4G02400arabidopsis_thalianaAT4G02400.118.479511.6959selaginella_moellendorffiiEFJ2576449.529831.348
AT4G02400arabidopsis_thalianaAT4G02400.156.257335.2047selaginella_moellendorffiiEFJ2576651.170232.0213
AT4G02400arabidopsis_thalianaAT4G02400.163.976647.3684oryza_sativaOs03t0343300-0161.877845.8145
AT4G02400arabidopsis_thalianaAT4G02400.134.619918.8304homo_sapiensENSP0000042861938.642321.0183
AT4G02400arabidopsis_thalianaAT4G02400.134.26919.2982homo_sapiensENSP0000037794438.002621.4008
AT4G02400arabidopsis_thalianaAT4G02400.163.157944.6784triticum_aestivumTraesCS7D02G334800.260.538142.8251
AT4G02400arabidopsis_thalianaAT4G02400.163.625744.9123triticum_aestivumTraesCS7B02G238400.161.05543.0976
AT4G02400arabidopsis_thalianaAT4G02400.163.625745.3801triticum_aestivumTraesCS7A02G344700.261.123643.5955
AT4G02400arabidopsis_thalianaAT4G02400.163.976647.3684oryza_rufipogonORUFI03G17540.261.877845.8145
AT4G02400arabidopsis_thalianaAT4G02400.163.157944.7953secale_cerealeSECCE7Rv1G0495740.160.742443.0821
AT4G02400arabidopsis_thalianaAT4G02400.115.204711.462gossypium_raimondiiKJB4992272.625754.7486
AT4G02400arabidopsis_thalianaAT4G02400.171.46254.0351gossypium_raimondiiKJB4989968.268251.6201
AT4G02400arabidopsis_thalianaAT4G02400.163.391847.2515oryza_punctataOPUNC03G16340.161.381745.7531
AT4G02400arabidopsis_thalianaAT4G02400.159.532242.6901eragrostis_tefEt_4A_032564.CDS62.917245.1174
AT4G02400arabidopsis_thalianaAT4G02400.163.391845.614eragrostis_tefEt_4B_036750.CDS63.096645.4016
AT4G02400arabidopsis_thalianaAT4G02400.152.982535.4386medicago_truncatulaKEH2365366.617644.5588
AT4G02400arabidopsis_thalianaAT4G02400.129.941519.6491medicago_truncatulaAET0295666.840743.8642
AT4G02400arabidopsis_thalianaAT4G02400.166.315847.3684medicago_truncatulaAES8213563.707945.5056
AT4G02400arabidopsis_thalianaAT4G02400.161.637443.1579medicago_truncatulaKEH3623463.189444.2446
AT4G02400arabidopsis_thalianaAT4G02400.162.105344.6784saccharum_spontaneumSspon.01G0009410-3D-mRNA-1:cds63.975946.0241
AT4G02400arabidopsis_thalianaAT4G02400.162.690144.9123sorghum_bicolorEER9487862.543844.8075
AT4G02400arabidopsis_thalianaAT4G02400.163.625745.0292triticum_dicoccoidesTRIDC7BG039260.161.05543.2099
AT4G02400arabidopsis_thalianaAT4G02400.163.859645.4971triticum_dicoccoidesTRIDC7AG048150.561.279543.6588
AT4G02400arabidopsis_thalianaAT4G02400.169.824653.2164coffea_canephoraCDP1712166.555250.7246
AT4G02400arabidopsis_thalianaAT4G02400.171.46254.386manihot_esculentaOAY6183467.513851.3812
AT4G02400arabidopsis_thalianaAT4G02400.166.081945.4971kalanchoe_fedtschenkoiKaladp0039s0136.1.v1.161.479942.3286
AT4G02400arabidopsis_thalianaAT4G02400.164.795345.4971trifolium_pratenseTp57577_TGAC_v2_mRNA992864.194745.0753
AT4G02400arabidopsis_thalianaAT4G02400.184.912373.8012brassica_rapa_ro18A02p033580.1_BraROA.184.714173.6289
AT4G02400arabidopsis_thalianaAT4G02400.124.327520.4678brassica_rapa_ro18A07g506340.1_BraROA.171.972360.5536
AT4G02400arabidopsis_thalianaAT4G02400.174.736864.9123brassica_rapa_ro18A09p001840.1_BraROA.181.609270.8812
AT4G02400arabidopsis_thalianaAT4G02400.172.514655.9064eucalyptus_grandisKCW5004868.888953.1111
AT4G02400arabidopsis_thalianaAT4G02400.130.409423.2749dioscorea_rotundataDRNTG_18203.172.829155.7423
AT4G02400arabidopsis_thalianaAT4G02400.113.450310.6433dioscorea_rotundataDRNTG_18204.166.47452.6012
AT4G02400arabidopsis_thalianaAT4G02400.169.473752.5146prunus_persicaONH939486649.8889
AT4G02400arabidopsis_thalianaAT4G02400.163.625745.4971avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0001893.158.810842.0541
AT4G02400arabidopsis_thalianaAT4G02400.163.859645.614avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0002874.158.836242.0259
AT4G02400arabidopsis_thalianaAT4G02400.164.093645.731avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0001733.261.920944.1808
AT4G02400arabidopsis_thalianaAT4G02400.168.187149.9415chenopodium_quinoaAUR62026599-RA:cds64.849847.4972
AT4G02400arabidopsis_thalianaAT4G02400.165.029247.7193chenopodium_quinoaAUR62005314-RA:cds63.981646.9505
AT4G02400arabidopsis_thalianaAT4G02400.16043.3918digitaria_exilisDexi9B01G0034930.1:cds64.285746.4912
AT4G02400arabidopsis_thalianaAT4G02400.163.274945.4971digitaria_exilisDexi9A01G0036200.1:cds63.72245.8186
AT4G02400arabidopsis_thalianaAT4G02400.163.742747.2515oryza_barthiiOBART03G16960.161.651645.7014
AT4G02400arabidopsis_thalianaAT4G02400.137.660831.1111brassica_oleraceaBo4g117070.176.122962.8842
AT4G02400arabidopsis_thalianaAT4G02400.153.918145.614brassica_oleraceaBo9g005730.176.072664.3564
AT4G02400arabidopsis_thalianaAT4G02400.185.61474.8538brassica_oleraceaBo2g100470.185.714374.9415
AT4G02400arabidopsis_thalianaAT4G02400.167.836350.9942prunus_dulcisVVA2523768.315751.3545
AT4G02400arabidopsis_thalianaAT4G02400.134.619919.6491galdieria_sulphurariaEME2670744.848525.4545
AT4G02400arabidopsis_thalianaAT4G02400.167.953251.6959corylus_avellanaCav02g14510.t167.479751.3357
AT4G02400arabidopsis_thalianaAT4G02400.163.859647.2515leersia_perrieriLPERR03G14770.159.090943.7229
AT4G02400arabidopsis_thalianaAT4G02400.166.666750.0585nicotiana_attenuataOIT0708066.666750.0585
AT4G02400arabidopsis_thalianaAT4G02400.169.473752.0468nicotiana_attenuataOIT0198466.368749.7207
AT4G02400arabidopsis_thalianaAT4G02400.19.590647.60234olea_europaeaOE9A002876C168.907654.6218
AT4G02400arabidopsis_thalianaAT4G02400.132.163723.2749olea_europaeaOE9A020659C266.58648.184
AT4G02400arabidopsis_thalianaAT4G02400.110.52637.48538olea_europaeaOE9A076243C171.428650.7937
AT4G02400arabidopsis_thalianaAT4G02400.120.818714.6199olea_europaeaOE9A078818C160.544242.517
AT4G02400arabidopsis_thalianaAT4G02400.145.73134.9708olea_europaeaOE9A058086C168.71752.5483
AT4G02400arabidopsis_thalianaAT4G02400.135.672519.4152saccharomyces_cerevisiaeYML093W33.926618.465
AT4G02400arabidopsis_thalianaAT4G02400.172.046854.9708pistacia_veracds-EVM0021313.166.738950.9209
AT4G02400arabidopsis_thalianaAT4G02400.123.157916.7251pistacia_veracds-EVM0023813.172.527552.381
AT4G02400arabidopsis_thalianaAT4G02400.130.643314.269drosophila_melanogasterFBpp007531733.981815.8236
AT4G02400arabidopsis_thalianaAT4G02400.184.210572.8655brassica_napusCDX9132685.714374.1667
AT4G02400arabidopsis_thalianaAT4G02400.140.701834.269brassica_napusCDY5959673.417761.8143
AT4G02400arabidopsis_thalianaAT4G02400.119.181315.5556brassica_napusCDX8065470.386357.0815
AT4G02400arabidopsis_thalianaAT4G02400.173.918163.6257brassica_napusCDY2204782.184770.7412
AT4G02400arabidopsis_thalianaAT4G02400.118.362615.7895brassica_napusCDX6955275.480864.9038
AT4G02400arabidopsis_thalianaAT4G02400.136.608230.5263brassica_napusCDY0993972.790760.6977
AT4G02400arabidopsis_thalianaAT4G02400.181.169670.1754brassica_napusCDY5536882.61971.4286
AT4G02400arabidopsis_thalianaAT4G02400.153.918145.614brassica_napusCDY5038976.072664.3564
AT4G02400arabidopsis_thalianaAT4G02400.170.526354.6199corchorus_capsularisOMO6386666.851451.7738
AT4G02400arabidopsis_thalianaAT4G02400.163.742747.3684oryza_meridionalisOMERI03G15100.161.651645.8145
AT4G02400arabidopsis_thalianaAT4G02400.187.017581.1696camelina_sativaCsa13g054830.190.40184.3256
AT4G02400arabidopsis_thalianaAT4G02400.178.479572.9825camelina_sativaCsa02g005630.189.586183.3111
AT4G02400arabidopsis_thalianaAT4G02400.189.239882.6901camelina_sativaCsa08g052070.188.515182.0186
AT4G02400arabidopsis_thalianaAT4G02400.168.888950.7602malus_domestica_goldenmRNA:MD03G023710064.939447.8501
AT4G02400arabidopsis_thalianaAT4G02400.167.602348.8889malus_domestica_goldenmRNA:MD11G025380065.090147.0721
AT4G02400arabidopsis_thalianaAT4G02400.166.900650.1754daucus_carotaKZM9739969.841352.381
AT4G02400arabidopsis_thalianaAT4G02400.168.304150.5263rosa_chinensisPRQ2639865.324448.3221
AT4G02400arabidopsis_thalianaAT4G02400.170.526353.9181juglans_regiacds.Jr11_14940_p165.048549.7303
AT4G02400arabidopsis_thalianaAT4G02400.152.631635.9064nymphaea_colorataNC5G0266890.1:cds50.847534.6893
AT4G02400arabidopsis_thalianaAT4G02400.162.92445.2632setaria_italicaKQK9094963.593445.7447
AT4G02400arabidopsis_thalianaAT4G02400.155.906435.4386physcomitrium_patensPp3c9_17240V3.247.895830.3607
AT4G02400arabidopsis_thalianaAT4G02400.171.578954.269vitis_viniferaVitvi07g00336_P00168.379951.8436
AT4G02400arabidopsis_thalianaAT4G02400.166.549749.2398cynara_cardunculusKVI0399667.49749.9407

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003674enables molecular_function1NDArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0006364involved_in rRNA processing1IEAArabidopsis_thaliana(3702)Process
GO:0010468acts_upstream_of_or_within regulation of gene expression1IEAArabidopsis_thaliana(3702)Process
GO:0016070acts_upstream_of_or_within RNA metabolic process1IEAArabidopsis_thaliana(3702)Process

Expression