Description

Ensembl ID AT3G63190 Gene ID 825494 Accession -
Symbol RRF Alias - Full Name ribosome recycling factor, chloroplast
Status Confidence Length 2252 bases Strand Minus strand
Position 3 : 23342550 - 23344801 RNA binding domain RRF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G63190 RRF PF01765 1.5e-58 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RRF-201 AT3G63190 1300 275aa AT3G63190

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G63190arabidopsis_thalianaAT3G01800.137.827723.221arabidopsis_thalianaAT3G63190.136.727322.5455

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G63190arabidopsis_thalianaAT3G63190.152.363633.8182chondrus_crispusCDF3647458.536637.8049
AT3G63190arabidopsis_thalianaAT3G63190.154.909134.5455chlamydomonas_reinhardtiiPNW8472156.133835.316
AT3G63190arabidopsis_thalianaAT3G63190.166.181850.1818marchantia_polymorphaPTQ4190362.975847.7509
AT3G63190arabidopsis_thalianaAT3G63190.166.545554.5455papaver_somniferumRZC5235373.49460.241
AT3G63190arabidopsis_thalianaAT3G63190.166.181852.7273papaver_somniferumRZC8089468.164854.3071
AT3G63190arabidopsis_thalianaAT3G63190.178.545567.6364cannabis_sativa_femalecds.evm.model.01.93578.260967.3913
AT3G63190arabidopsis_thalianaAT3G63190.173.454564.7273ficus_caricaFCD_00000703-RA:cds73.722664.9635
AT3G63190arabidopsis_thalianaAT3G63190.177.818266.1818theobroma_cacaoEOX9475571.333360.6667
AT3G63190arabidopsis_thalianaAT3G63190.172.363657.8182beta_vulgarisKMT1338472.101457.6087
AT3G63190arabidopsis_thalianaAT3G63190.177.454567.2727cucumis_meloMELO3C014391.2.176.618766.5468
AT3G63190arabidopsis_thalianaAT3G63190.177.454566.5455cucumis_sativusKGN4791176.618765.8273
AT3G63190arabidopsis_thalianaAT3G63190.177.454566.1818populus_trichocarpaPotri.002G052400.2.v4.174.475563.6364
AT3G63190arabidopsis_thalianaAT3G63190.173.818259.2727solanum_lycopersicumSolyc09g065270.3.176.0361.0487
AT3G63190arabidopsis_thalianaAT3G63190.133.090913.8182caenorhabditis_elegansT20F5.3.138.235315.9664
AT3G63190arabidopsis_thalianaAT3G63190.169.454556.7273lactuca_sativacds-PLY70207.144.626236.4486
AT3G63190arabidopsis_thalianaAT3G63190.150.181834.5455ostreococcus_lucimarinusABO9460778.409153.9773
AT3G63190arabidopsis_thalianaAT3G63190.164.727348.3636eragrostis_curvulaTVU3834463.120647.1631
AT3G63190arabidopsis_thalianaAT3G63190.165.090949.0909eragrostis_curvulaTVU3835873.360755.3279
AT3G63190arabidopsis_thalianaAT3G63190.172.363663.2727citrullus_lanatusCla97C07G128580.180.566870.4453
AT3G63190arabidopsis_thalianaAT3G63190.173.090963.2727vigna_radiataVradi08g09430.175.563965.4135
AT3G63190arabidopsis_thalianaAT3G63190.171.272758.5455amborella_trichopodaERN0083471.794958.9744
AT3G63190arabidopsis_thalianaAT3G63190.174.181863.6364vigna_unguiculataVigun07g109800.1.v1.277.862666.7939
AT3G63190arabidopsis_thalianaAT3G63190.172.727363.6364phaseolus_vulgarisESW1663275.18865.7895
AT3G63190arabidopsis_thalianaAT3G63190.173.818261.0909asparagus_officinalisONK6229173.285260.6498
AT3G63190arabidopsis_thalianaAT3G63190.173.090961.4545pisum_sativumPsat6g060640.1.cds75.280963.2959
AT3G63190arabidopsis_thalianaAT3G63190.170.181856.3636brachypodium_distachyonPNT7489772.556458.2707
AT3G63190arabidopsis_thalianaAT3G63190.17665.4545quercus_subercds-POE95514.175.451364.9819
AT3G63190arabidopsis_thalianaAT3G63190.166.181857.4545ananas_comosusAco024612.1.mrna180.176269.6035
AT3G63190arabidopsis_thalianaAT3G63190.197.818296.3636arabidopsis_lyratascaffold_503605.197.818296.3636
AT3G63190arabidopsis_thalianaAT3G63190.17665.8182quercus_lobataQL12p021631:mrna75.451365.343
AT3G63190arabidopsis_thalianaAT3G63190.173.090962.5455lupinus_angustifoliusOIW0674270.774760.5634
AT3G63190arabidopsis_thalianaAT3G63190.174.545562.5455lupinus_angustifoliusOIV9132877.651565.1515
AT3G63190arabidopsis_thalianaAT3G63190.193.090990.1818eutrema_salsugineumESQ4375394.117691.1765
AT3G63190arabidopsis_thalianaAT3G63190.19694.5455arabidopsis_hallerig05265.t197.058895.5882
AT3G63190arabidopsis_thalianaAT3G63190.173.090962.5455cajanus_cajanC.cajan_34661.t75.563964.6617
AT3G63190arabidopsis_thalianaAT3G63190.175.272760.3636solanum_tuberosumPGSC0003DMT40004984177.528162.1723
AT3G63190arabidopsis_thalianaAT3G63190.16854.9091setaria_viridisTKW0817272.480658.5271
AT3G63190arabidopsis_thalianaAT3G63190.168.363654.5455oryza_nivaraONIVA07G17650.157.317145.7317
AT3G63190arabidopsis_thalianaAT3G63190.174.909162.1818ipomoea_trilobaitb07g20070.t175.457962.6374
AT3G63190arabidopsis_thalianaAT3G63190.166.545553.8182oryza_glumipatulaOGLUM07G19070.180.973465.4867
AT3G63190arabidopsis_thalianaAT3G63190.170.545556zea_maysZm00001eb174010_P00173.484858.3333
AT3G63190arabidopsis_thalianaAT3G63190.16852.7273zea_maysZm00001eb260570_P00561.111147.3856
AT3G63190arabidopsis_thalianaAT3G63190.160.727346.5455lolium_perennecds.KYUSt_chr2.1623069.008352.8926
AT3G63190arabidopsis_thalianaAT3G63190.149.454533.8182chara_brauniiGBG7830057.142939.0756
AT3G63190arabidopsis_thalianaAT3G63190.192.363686.1818arabis_alpinaKFK3545694.074187.7778
AT3G63190arabidopsis_thalianaAT3G63190.186.909180brassica_junceacds.BjuA09g12870S79.933173.5786
AT3G63190arabidopsis_thalianaAT3G63190.189.454582.9091brassica_junceacds.BjuA04g00200S91.449884.7584
AT3G63190arabidopsis_thalianaAT3G63190.165.090952.7273oryza_brachyanthaOB07G25110.180.995565.6109
AT3G63190arabidopsis_thalianaAT3G63190.173.454560.7273glycine_maxKRH3202269.178157.1918
AT3G63190arabidopsis_thalianaAT3G63190.175.272763.6364glycine_maxKRH7142379.310367.0498
AT3G63190arabidopsis_thalianaAT3G63190.155.272736cyanidioschyzon_merolaeCMQ461CT48.717931.7308
AT3G63190arabidopsis_thalianaAT3G63190.16860.3636corymbia_citriodoracds-KAF8019880.168.7561.0294
AT3G63190arabidopsis_thalianaAT3G63190.169.090953.8182triticum_urartuTuG1812G0200002110.01.T0271.428655.6391
AT3G63190arabidopsis_thalianaAT3G63190.165.090952oryza_longistaminataKN538693.1_FGP14185.645968.4211
AT3G63190arabidopsis_thalianaAT3G63190.165.090953.0909fraxinus_excelsiorFRAEX38873_v2_000041180.1.cds71.658.4
AT3G63190arabidopsis_thalianaAT3G63190.173.454560fraxinus_excelsiorFRAEX38873_v2_000064200.1.cds76.226462.2642
AT3G63190arabidopsis_thalianaAT3G63190.169.090954.5455avena_sativa_sangAVESA.00010b.r2.6AG1052880.1.CDS71.428656.391
AT3G63190arabidopsis_thalianaAT3G63190.168.727354.1818avena_sativa_sangAVESA.00010b.r2.2DG0353360.1.CDS61.363648.3766
AT3G63190arabidopsis_thalianaAT3G63190.168.727354.9091avena_sativa_sangAVESA.00010b.r2.2CG0271830.1.CDS71.052656.7669
AT3G63190arabidopsis_thalianaAT3G63190.174.181862.1818musa_acuminataMa07_p07510.172.597960.8541
AT3G63190arabidopsis_thalianaAT3G63190.170.181855.6364oryza_glaberrimaORGLA07G0249700.172.556457.5188
AT3G63190arabidopsis_thalianaAT3G63190.169.818253.4545hordeum_vulgareHORVU.MOREX.r3.2HG0133180.272.180555.2632
AT3G63190arabidopsis_thalianaAT3G63190.169.454554.1818triticum_turgidumTRITD2Av1G070980.171.804556.015
AT3G63190arabidopsis_thalianaAT3G63190.164.363649.8182triticum_turgidumTRITD2Bv1G080290.369.960554.1502
AT3G63190arabidopsis_thalianaAT3G63190.168.363654.5455panicum_halliiPUZ4985271.755757.2519
AT3G63190arabidopsis_thalianaAT3G63190.167.272754.1818echinochloa_crusgalliscaffold331.93.cds70.342256.654
AT3G63190arabidopsis_thalianaAT3G63190.169.818256echinochloa_crusgalliscaffold260.68.cds72.452858.1132
AT3G63190arabidopsis_thalianaAT3G63190.174.545558.9091actinidia_chinensisPSS1461672.438257.2438
AT3G63190arabidopsis_thalianaAT3G63190.178.909166.1818citrus_clementinaESR5730478.623265.942
AT3G63190arabidopsis_thalianaAT3G63190.170.181855.6364oryza_indicaBGIOSGA025975-PA72.556457.5188
AT3G63190arabidopsis_thalianaAT3G63190.160.363644.3636selaginella_moellendorffiiEFJ1233886.458363.5417
AT3G63190arabidopsis_thalianaAT3G63190.160.363644.3636selaginella_moellendorffiiEFJ3373786.458363.5417
AT3G63190arabidopsis_thalianaAT3G63190.170.181855.6364oryza_sativaOs07t0570700-0172.556457.5188
AT3G63190arabidopsis_thalianaAT3G63190.13617.4545homo_sapiensENSP0000034386737.786318.3206
AT3G63190arabidopsis_thalianaAT3G63190.169.454554.1818triticum_aestivumTraesCS2B02G225300.171.804556.015
AT3G63190arabidopsis_thalianaAT3G63190.169.454554.1818triticum_aestivumTraesCS2A02G197900.171.804556.015
AT3G63190arabidopsis_thalianaAT3G63190.169.454554.1818triticum_aestivumTraesCS2D02G205900.271.804556.015
AT3G63190arabidopsis_thalianaAT3G63190.170.181854.1818secale_cerealeSECCE2Rv1G0087040.172.556456.015
AT3G63190arabidopsis_thalianaAT3G63190.176.727364.7273gossypium_raimondiiKJB4210866.984156.5079
AT3G63190arabidopsis_thalianaAT3G63190.170.545558.1818helianthus_annuusmRNA:HanXRQr2_Chr10g042422173.207660.3774
AT3G63190arabidopsis_thalianaAT3G63190.168.363654.5455oryza_punctataOPUNC07G18240.174.900459.761
AT3G63190arabidopsis_thalianaAT3G63190.16446.9091eragrostis_tefEt_5B_044820.CDS73.640253.9749
AT3G63190arabidopsis_thalianaAT3G63190.157.090942.1818eragrostis_tefEt_5A_042143.CDS71.040752.4887
AT3G63190arabidopsis_thalianaAT3G63190.170.909160medicago_truncatulaAES6089074.427562.9771
AT3G63190arabidopsis_thalianaAT3G63190.170.181853.8182saccharum_spontaneumSspon.06G0013000-4D-mRNA-1:cds63.486848.6842
AT3G63190arabidopsis_thalianaAT3G63190.169.454554.9091sorghum_bicolorKXG2424472.075556.9811
AT3G63190arabidopsis_thalianaAT3G63190.168.363653.4545triticum_dicoccoidesTRIDC2AG025490.173.437557.4219
AT3G63190arabidopsis_thalianaAT3G63190.169.454554.1818triticum_dicoccoidesTRIDC2BG029940.462.418348.6928
AT3G63190arabidopsis_thalianaAT3G63190.174.181861.4545coffea_canephoraCDP0363465.594954.3408
AT3G63190arabidopsis_thalianaAT3G63190.178.545565.4545manihot_esculentaOAY4971078.260965.2174
AT3G63190arabidopsis_thalianaAT3G63190.173.454556.7273kalanchoe_fedtschenkoiKaladp0012s0055.1.v1.172.661956.1151
AT3G63190arabidopsis_thalianaAT3G63190.171.272760.7273trifolium_pratenseTp57577_TGAC_v2_mRNA943474.524763.4981
AT3G63190arabidopsis_thalianaAT3G63190.187.272780brassica_rapa_ro18A09p068360.1_BraROA.188.235380.8824
AT3G63190arabidopsis_thalianaAT3G63190.18075.2727brassica_rapa_ro18A04p000260.1_BraROA.181.784476.9517
AT3G63190arabidopsis_thalianaAT3G63190.172.363662.1818eucalyptus_grandisKCW5883868.384958.7629
AT3G63190arabidopsis_thalianaAT3G63190.170.545558.9091dioscorea_rotundataDRNTG_25375.170.036158.4838
AT3G63190arabidopsis_thalianaAT3G63190.170.545557.8182prunus_persicaONH9358367.595855.4007
AT3G63190arabidopsis_thalianaAT3G63190.169.454554.9091avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0002489.165.187751.5358
AT3G63190arabidopsis_thalianaAT3G63190.170.181856.3636avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0000508.165.870352.901
AT3G63190arabidopsis_thalianaAT3G63190.169.454554.9091avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0002285.165.187751.5358
AT3G63190arabidopsis_thalianaAT3G63190.173.090958.5455chenopodium_quinoaAUR62036023-RA:cds56.779745.4802
AT3G63190arabidopsis_thalianaAT3G63190.16451.2727digitaria_exilisDexi6A01G0001300.1:cds73.02958.5062
AT3G63190arabidopsis_thalianaAT3G63190.165.454553.0909digitaria_exilisDexi6B01G0001120.1:cds75.630261.3445
AT3G63190arabidopsis_thalianaAT3G63190.169.090954.9091oryza_barthiiOBART07G19310.157.926846.0366
AT3G63190arabidopsis_thalianaAT3G63190.187.636480brassica_oleraceaBo8g098510.191.287983.3333
AT3G63190arabidopsis_thalianaAT3G63190.188.363682.1818brassica_oleraceaBo4g098150.182.094676.3513
AT3G63190arabidopsis_thalianaAT3G63190.169.818256.7273prunus_dulcisVVA1395966.89954.3554
AT3G63190arabidopsis_thalianaAT3G63190.154.181834.9091galdieria_sulphurariaEME2767160.080638.7097
AT3G63190arabidopsis_thalianaAT3G63190.169.454559.2727corylus_avellanaCav02g11800.t146.928740.0491
AT3G63190arabidopsis_thalianaAT3G63190.166.909154.1818leersia_perrieriLPERR07G16720.181.777866.2222
AT3G63190arabidopsis_thalianaAT3G63190.173.818260.7273nicotiana_attenuataOIT2640776.603863.0189
AT3G63190arabidopsis_thalianaAT3G63190.16854.9091olea_europaeaOE9A098171C268.498255.3114
AT3G63190arabidopsis_thalianaAT3G63190.177.454566.5455pistacia_veracds-EVM0025834.277.173966.3043
AT3G63190arabidopsis_thalianaAT3G63190.168.363658.9091pistacia_veracds-EVM0022746.174.603264.2857
AT3G63190arabidopsis_thalianaAT3G63190.135.272713.8182drosophila_melanogasterFBpp007617238.18914.9606
AT3G63190arabidopsis_thalianaAT3G63190.188.727381.8182brassica_napusCDX891808073.7705
AT3G63190arabidopsis_thalianaAT3G63190.184.363677.0909brassica_napusCDX7668787.878880.303
AT3G63190arabidopsis_thalianaAT3G63190.185.818278.9091brassica_napusCDY5645889.393982.197
AT3G63190arabidopsis_thalianaAT3G63190.189.454582.5455brassica_napusCDX9392691.111184.0741
AT3G63190arabidopsis_thalianaAT3G63190.176.363663.2727corchorus_capsularisOMO7768776.363663.2727
AT3G63190arabidopsis_thalianaAT3G63190.159.636451.2727corchorus_capsularisOMO8188094.797781.5029
AT3G63190arabidopsis_thalianaAT3G63190.166.181853.0909oryza_meridionalisOMERI07G16010.277.777862.3932
AT3G63190arabidopsis_thalianaAT3G63190.196.727393.4545camelina_sativaCsa07g001440.184.444481.5873
AT3G63190arabidopsis_thalianaAT3G63190.196.363694.1818camelina_sativaCsa05g095560.196.363694.1818
AT3G63190arabidopsis_thalianaAT3G63190.196.363693.4545camelina_sativaCsa16g001370.185.483982.9032
AT3G63190arabidopsis_thalianaAT3G63190.166.181854.1818malus_domestica_goldenmRNA:MD11G023210088.349572.3301
AT3G63190arabidopsis_thalianaAT3G63190.173.090959.6364malus_domestica_goldenmRNA:MD03G021670068.835656.1644
AT3G63190arabidopsis_thalianaAT3G63190.173.090958.5455daucus_carotaKZN0372568.135654.5763
AT3G63190arabidopsis_thalianaAT3G63190.172.363659.2727daucus_carotaKZM9517970.31857.5972
AT3G63190arabidopsis_thalianaAT3G63190.173.818260rosa_chinensisPRQ2610772.24258.7189
AT3G63190arabidopsis_thalianaAT3G63190.132.363627.2727rosa_chinensisPRQ5158980.180267.5676
AT3G63190arabidopsis_thalianaAT3G63190.173.818262.1818juglans_regiacds.Jr11_12540_p172.759961.2903
AT3G63190arabidopsis_thalianaAT3G63190.174.909163.6364juglans_regiacds.Jr11_12530_p173.571462.5
AT3G63190arabidopsis_thalianaAT3G63190.149.454544.7273nymphaea_colorataNC6G0155150.1:cds78.160970.6897
AT3G63190arabidopsis_thalianaAT3G63190.17664.7273vigna_angularisKOM3503478.571466.9173
AT3G63190arabidopsis_thalianaAT3G63190.16854.9091setaria_italicaKQL0026472.480658.5271
AT3G63190arabidopsis_thalianaAT3G63190.166.545548physcomitrium_patensPp3c18_6870V3.269.318250
AT3G63190arabidopsis_thalianaAT3G63190.176.363664.3636vitis_viniferaVitvi07g00132_P00176.642364.5985

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005507enables copper ion binding1HDAArabidopsis_thaliana(3702)Function
GO:0005829located_in cytosol1HDAArabidopsis_thaliana(3702)Component
GO:0009507located_in chloroplast3HDA,IDA,ISMArabidopsis_thaliana(3702)Component
GO:0009536located_in plastid1IMPArabidopsis_thaliana(3702)Component
GO:0009570located_in chloroplast stroma1HDAArabidopsis_thaliana(3702)Component
GO:0009579located_in thylakoid1HDAArabidopsis_thaliana(3702)Component
GO:0009658acts_upstream_of_or_within chloroplast organization1IMPArabidopsis_thaliana(3702)Process
GO:0009793acts_upstream_of_or_within embryo development ending in seed dormancy1IMPArabidopsis_thaliana(3702)Process
GO:0032544acts_upstream_of_or_within plastid translation1IMPArabidopsis_thaliana(3702)Process
GO:0050832acts_upstream_of_or_within defense response to fungus1IDAArabidopsis_thaliana(3702)Process

Expression