Description

Ensembl ID AT3G25470 Gene ID 822131 Accession -
Symbol AT3G25470 Alias - Full Name bacterial hemolysin-like protein
Status Confidence Length 2395 bases Strand Plus strand
Position 3 : 9232821 - 9235215 RNA binding domain FtsJ , S4
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G25470 S4 PF01479 7.4e-08 1
AT3G25470 FtsJ PF01728 1.1e-19 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT3G25470-201 AT3G25470 1317 301aa AT3G25470

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G25470

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G25470arabidopsis_thalianaAT3G25470.155.481742.1927chlamydomonas_reinhardtiiPNW7726061.623646.8635
AT3G25470arabidopsis_thalianaAT3G25470.170.764156.4784marchantia_polymorphaPTQ4809362.280749.7076
AT3G25470arabidopsis_thalianaAT3G25470.175.747561.4618papaver_somniferumRZC4794870.370457.0988
AT3G25470arabidopsis_thalianaAT3G25470.163.455253.8206cannabis_sativa_femalecds.evm.model.04.213372.348561.3636
AT3G25470arabidopsis_thalianaAT3G25470.165.780755.1495ficus_caricaFCD_00000152-RA:cds62.06952.0376
AT3G25470arabidopsis_thalianaAT3G25470.172.757561.4618theobroma_cacaoEOX9369975.517263.7931
AT3G25470arabidopsis_thalianaAT3G25470.175.083160.4651beta_vulgarisKMT1013172.668858.5209
AT3G25470arabidopsis_thalianaAT3G25470.175.747562.4585cucumis_meloMELO3C021126.2.177.02763.5135
AT3G25470arabidopsis_thalianaAT3G25470.175.415362.1262cucumis_sativusKGN4467176.689263.1757
AT3G25470arabidopsis_thalianaAT3G25470.173.089763.1229populus_trichocarpaPotri.014G175500.6.v4.168.965559.5611
AT3G25470arabidopsis_thalianaAT3G25470.147.176139.5349solanum_lycopersicumSolyc09g047870.3.169.607858.3333
AT3G25470arabidopsis_thalianaAT3G25470.174.086461.1296lactuca_sativacds-PLY91732.168.195756.2691
AT3G25470arabidopsis_thalianaAT3G25470.154.152844.186ostreococcus_lucimarinusABO9671066.530654.2857
AT3G25470arabidopsis_thalianaAT3G25470.171.096359.1362eragrostis_curvulaTVU2602459.776549.7207
AT3G25470arabidopsis_thalianaAT3G25470.158.80448.1728eragrostis_curvulaTVU0360956.190546.0317
AT3G25470arabidopsis_thalianaAT3G25470.174.086462.1262citrullus_lanatusCla97C09G171100.175.337863.1757
AT3G25470arabidopsis_thalianaAT3G25470.174.086461.1296vigna_radiataVradi09g06500.171.24658.7859
AT3G25470arabidopsis_thalianaAT3G25470.171.428659.4684amborella_trichopodaERN2018270.957159.0759
AT3G25470arabidopsis_thalianaAT3G25470.174.418661.4618vigna_unguiculataVigun10g025300.1.v1.270.440358.1761
AT3G25470arabidopsis_thalianaAT3G25470.175.415362.4585prunus_aviumPav_sc0000648.1_g450.1.mk:mrna71.383659.1195
AT3G25470arabidopsis_thalianaAT3G25470.175.083161.4618phaseolus_vulgarisESW0630472.204559.1054
AT3G25470arabidopsis_thalianaAT3G25470.174.418660.4651pisum_sativumPsat4g208240.1.cds67.673754.9849
AT3G25470arabidopsis_thalianaAT3G25470.171.096357.4751brachypodium_distachyonKQJ8874971.571957.8595
AT3G25470arabidopsis_thalianaAT3G25470.138.538232.2259quercus_subercds-POE75965.178.378465.5405
AT3G25470arabidopsis_thalianaAT3G25470.175.747563.4552quercus_subercds-POE67504.173.786461.8123
AT3G25470arabidopsis_thalianaAT3G25470.176.744264.1196quercus_subercds-POE55597.174.757362.4595
AT3G25470arabidopsis_thalianaAT3G25470.174.086460.4651ananas_comosusAco003423.1.mrna175.084261.2795
AT3G25470arabidopsis_thalianaAT3G25470.194.019991.6944arabidopsis_lyratascaffold_303164.193.708691.3907
AT3G25470arabidopsis_thalianaAT3G25470.175.747564.4518quercus_lobataQL09p047707:mrna73.786462.7832
AT3G25470arabidopsis_thalianaAT3G25470.143.853833.5548capsicum_annuumPHT7284750.769238.8462
AT3G25470arabidopsis_thalianaAT3G25470.163.787453.8206lupinus_angustifoliusOIW188527563.2812
AT3G25470arabidopsis_thalianaAT3G25470.190.697785.7143eutrema_salsugineumESQ3706189.802684.8684
AT3G25470arabidopsis_thalianaAT3G25470.198.671197.3422arabidopsis_hallerig23376.t198.671197.3422
AT3G25470arabidopsis_thalianaAT3G25470.167.109654.8173cajanus_cajanC.cajan_00764.t50.626641.3534
AT3G25470arabidopsis_thalianaAT3G25470.172.09358.804setaria_viridisTKW4174662.177750.7163
AT3G25470arabidopsis_thalianaAT3G25470.166.445254.1528setaria_viridisTKV9996561.919550.4644
AT3G25470arabidopsis_thalianaAT3G25470.173.089760.4651oryza_nivaraONIVA11G08460.174.576361.6949
AT3G25470arabidopsis_thalianaAT3G25470.177.076465.4485ipomoea_trilobaitb14g18480.t174.598163.3441
AT3G25470arabidopsis_thalianaAT3G25470.172.757560.4651oryza_glumipatulaOGLUM11G08090.174.237361.6949
AT3G25470arabidopsis_thalianaAT3G25470.171.760859.1362zea_maysZm00001eb168340_P00273.720160.7509
AT3G25470arabidopsis_thalianaAT3G25470.170.431960.1329sesamum_indicumSIN_1023394.t73.356462.6298
AT3G25470arabidopsis_thalianaAT3G25470.165.116351.495lolium_perennecds.KYUSt_chr4.1997967.35453.2646
AT3G25470arabidopsis_thalianaAT3G25470.168.438556.1462chara_brauniiGBG9321539.922532.7519
AT3G25470arabidopsis_thalianaAT3G25470.191.694487.0432arabis_alpinaKFK3984590.491885.9016
AT3G25470arabidopsis_thalianaAT3G25470.189.70183.0565brassica_junceacds.BjuB02g08450S88.235381.6993
AT3G25470arabidopsis_thalianaAT3G25470.185.382176.0797brassica_junceacds.BjuB01g20560S73.63965.616
AT3G25470arabidopsis_thalianaAT3G25470.172.425260.4651oryza_brachyanthaOB11G16630.174.402762.116
AT3G25470arabidopsis_thalianaAT3G25470.173.421961.4618glycine_maxKRH4898170.158758.7302
AT3G25470arabidopsis_thalianaAT3G25470.173.754261.1296glycine_maxKRH6629770.476258.4127
AT3G25470arabidopsis_thalianaAT3G25470.173.421961.794corymbia_citriodoracds-KAF8005669.173.178861.5894
AT3G25470arabidopsis_thalianaAT3G25470.170.764157.8073aegilops_tauschiiAET4Gv20178500.575.26561.4841
AT3G25470arabidopsis_thalianaAT3G25470.171.096357.8073triticum_urartuTuG1812G0400000847.01.T0366.049453.7037
AT3G25470arabidopsis_thalianaAT3G25470.173.089760.4651oryza_longistaminataKN538993.1_FGP00974.576361.6949
AT3G25470arabidopsis_thalianaAT3G25470.143.853834.5515fraxinus_excelsiorFRAEX38873_v2_000137660.1.cds64.390250.7317
AT3G25470arabidopsis_thalianaAT3G25470.170.431959.4684fraxinus_excelsiorFRAEX38873_v2_000260340.1.cds76.811664.8551
AT3G25470arabidopsis_thalianaAT3G25470.171.760858.804avena_sativa_sangAVESA.00010b.r2.4DG0738530.1.CDS65.853753.9634
AT3G25470arabidopsis_thalianaAT3G25470.172.09358.4718avena_sativa_sangAVESA.00010b.r2.7CG0689740.1.CDS67.391354.6584
AT3G25470arabidopsis_thalianaAT3G25470.172.09358.4718avena_sativa_sangAVESA.00010b.r2.4AG0594400.1.CDS68.888955.873
AT3G25470arabidopsis_thalianaAT3G25470.176.744265.1163musa_acuminataMa09_p07780.175.490264.0523
AT3G25470arabidopsis_thalianaAT3G25470.173.089760.4651oryza_glaberrimaORGLA11G0073300.174.576361.6949
AT3G25470arabidopsis_thalianaAT3G25470.172.425259.1362hordeum_vulgareHORVU.MOREX.r3.4HG0343880.168.553555.9748
AT3G25470arabidopsis_thalianaAT3G25470.165.780751.495triticum_turgidumTRITD4Av1G173360.343.043533.6957
AT3G25470arabidopsis_thalianaAT3G25470.172.425258.4718triticum_turgidumTRITD4Bv1G030120.154.911844.3325
AT3G25470arabidopsis_thalianaAT3G25470.171.096358.4718panicum_halliiPUZ4413872.053959.2593
AT3G25470arabidopsis_thalianaAT3G25470.173.421959.4684echinochloa_crusgalliscaffold216.64.cds52.122642.217
AT3G25470arabidopsis_thalianaAT3G25470.142.192732.8904echinochloa_crusgalliscaffold324.85.cds53.586541.7722
AT3G25470arabidopsis_thalianaAT3G25470.171.760858.804echinochloa_crusgalliscaffold62.42.cds72.97359.7973
AT3G25470arabidopsis_thalianaAT3G25470.170.431957.4751echinochloa_crusgalliscaffold59.66.cds71.621658.4459
AT3G25470arabidopsis_thalianaAT3G25470.177.408665.4485actinidia_chinensisPSS1413972.812561.5625
AT3G25470arabidopsis_thalianaAT3G25470.177.408665.7807actinidia_chinensisPSR9497772.812561.875
AT3G25470arabidopsis_thalianaAT3G25470.174.086461.4618citrus_clementinaESR6118370.569658.5443
AT3G25470arabidopsis_thalianaAT3G25470.163.787453.8206citrus_clementinaESR6115682.403469.5279
AT3G25470arabidopsis_thalianaAT3G25470.169.10353.8206oryza_indicaBGIOSGA034206-PA68.196753.1148
AT3G25470arabidopsis_thalianaAT3G25470.165.780752.4917selaginella_moellendorffiiEFJ2140374.436159.3985
AT3G25470arabidopsis_thalianaAT3G25470.162.790748.8372selaginella_moellendorffiiEFJ0665477.777860.4938
AT3G25470arabidopsis_thalianaAT3G25470.164.78451.8272selaginella_moellendorffiiEFJ2376677.38161.9048
AT3G25470arabidopsis_thalianaAT3G25470.173.089760.4651oryza_sativaOs11t0247400-0174.576361.6949
AT3G25470arabidopsis_thalianaAT3G25470.170.764157.8073triticum_aestivumTraesCS4B02G087200.164.93953.0488
AT3G25470arabidopsis_thalianaAT3G25470.171.096358.1395triticum_aestivumTraesCS4A02G229200.265.644253.681
AT3G25470arabidopsis_thalianaAT3G25470.172.425258.804triticum_aestivumTraesCS4D02G084400.262.285750.5714
AT3G25470arabidopsis_thalianaAT3G25470.179.069864.784gossypium_raimondiiKJB4259978.289564.1447
AT3G25470arabidopsis_thalianaAT3G25470.172.09360.7973helianthus_annuusmRNA:HanXRQr2_Chr07g028837172.09360.7973
AT3G25470arabidopsis_thalianaAT3G25470.136.877131.8937helianthus_annuusmRNA:HanXRQr2_Chr04g015876179.285768.5714
AT3G25470arabidopsis_thalianaAT3G25470.173.421960.7973oryza_punctataOPUNC11G08060.175.684962.6712
AT3G25470arabidopsis_thalianaAT3G25470.170.431958.4718eragrostis_tefEt_6A_047543.CDS59.383849.2997
AT3G25470arabidopsis_thalianaAT3G25470.170.431957.8073eragrostis_tefEt_6B_049430.CDS59.718349.0141
AT3G25470arabidopsis_thalianaAT3G25470.173.421960.4651medicago_truncatulaKEH1803669.062556.875
AT3G25470arabidopsis_thalianaAT3G25470.160.465149.5017saccharum_spontaneumSspon.07G0026310-1B-mRNA-1:cds84.259368.9815
AT3G25470arabidopsis_thalianaAT3G25470.147.840538.5382saccharum_spontaneumSspon.05G0034880-2D-mRNA-1:cds69.230855.7692
AT3G25470arabidopsis_thalianaAT3G25470.171.096358.804sorghum_bicolorEES1903471.571959.1973
AT3G25470arabidopsis_thalianaAT3G25470.174.086460.7973sorghum_bicolorKXG2809662.640451.4045
AT3G25470arabidopsis_thalianaAT3G25470.172.09358.1395triticum_dicoccoidesTRIDC4BG013520.754.936744.3038
AT3G25470arabidopsis_thalianaAT3G25470.173.089758.804triticum_dicoccoidesTRIDC4AG036280.359.459547.8378
AT3G25470arabidopsis_thalianaAT3G25470.175.415364.1196coffea_canephoraCDP0398871.159960.5016
AT3G25470arabidopsis_thalianaAT3G25470.160.465150.1661manihot_esculentaOAY3489371.653559.4488
AT3G25470arabidopsis_thalianaAT3G25470.173.754259.8007kalanchoe_fedtschenkoiKaladp0080s0064.1.v1.166.666754.0541
AT3G25470arabidopsis_thalianaAT3G25470.174.418660.4651trifolium_pratenseTp57577_TGAC_v2_mRNA1798469.781956.6978
AT3G25470arabidopsis_thalianaAT3G25470.190.365482.7243brassica_rapa_ro18A07p010400.1_BraROA.188.599381.1075
AT3G25470arabidopsis_thalianaAT3G25470.189.70182.7243brassica_rapa_ro18A03p047160.1_BraROA.188.815881.9079
AT3G25470arabidopsis_thalianaAT3G25470.174.418661.794eucalyptus_grandisKCW4871874.172261.5894
AT3G25470arabidopsis_thalianaAT3G25470.173.421960.4651dioscorea_rotundataDRNTG_13222.174.161161.0738
AT3G25470arabidopsis_thalianaAT3G25470.175.415362.1262prunus_persicaONH9265370.061757.716
AT3G25470arabidopsis_thalianaAT3G25470.172.09358.4718avena_sativa_ot3098cds.AVESA.00001b.r3.7Cg0001468.167.391354.6584
AT3G25470arabidopsis_thalianaAT3G25470.171.760858.804avena_sativa_ot3098cds.AVESA.00001b.r3.4Dg0001217.164.477652.8358
AT3G25470arabidopsis_thalianaAT3G25470.172.09359.1362avena_sativa_ot3098cds.AVESA.00001b.r3.4Ag0000862.169.551357.0513
AT3G25470arabidopsis_thalianaAT3G25470.169.435257.8073chenopodium_quinoaAUR62008069-RA:cds85.306171.0204
AT3G25470arabidopsis_thalianaAT3G25470.164.451853.8206chenopodium_quinoaAUR62028646-RA:cds76.078463.5294
AT3G25470arabidopsis_thalianaAT3G25470.122.591418.9369digitaria_exilisDexi8B01G0006250.1:cds70.103158.7629
AT3G25470arabidopsis_thalianaAT3G25470.140.199331.5615digitaria_exilisDexi8A01G0007250.1:cds55.251143.379
AT3G25470arabidopsis_thalianaAT3G25470.173.089760.4651oryza_barthiiOBART11G08270.274.576361.6949
AT3G25470arabidopsis_thalianaAT3G25470.189.70183.0565brassica_oleraceaBo3g084020.188.524681.9672
AT3G25470arabidopsis_thalianaAT3G25470.189.036582.392brassica_oleraceaBo7g031000.182.972176.7802
AT3G25470arabidopsis_thalianaAT3G25470.175.415362.1262prunus_dulcisVVA3059370.061757.716
AT3G25470arabidopsis_thalianaAT3G25470.176.079763.7874corylus_avellanaCav01g36860.t174.1162.1359
AT3G25470arabidopsis_thalianaAT3G25470.163.455251.8272leersia_perrieriLPERR06G20120.271.003757.9926
AT3G25470arabidopsis_thalianaAT3G25470.172.425258.804leersia_perrieriLPERR11G07410.174.657560.6164
AT3G25470arabidopsis_thalianaAT3G25470.172.757559.8007olea_europaeaOE9A115107C268.012455.9006
AT3G25470arabidopsis_thalianaAT3G25470.134.219326.2458olea_europaeaOE9A018331C154.210541.5789
AT3G25470arabidopsis_thalianaAT3G25470.137.873828.9037olea_europaeaOE9A068265C158.461544.6154
AT3G25470arabidopsis_thalianaAT3G25470.170.099758.804olea_europaeaOE9A097525C173.263961.4583
AT3G25470arabidopsis_thalianaAT3G25470.137.541530.897olea_europaeaOE9A081027C174.834461.5894
AT3G25470arabidopsis_thalianaAT3G25470.177.076464.4518pistacia_veracds-EVM0003971.175.080962.7832
AT3G25470arabidopsis_thalianaAT3G25470.151.162843.8538pistacia_veracds-EVM0003528.158.555150.1901
AT3G25470arabidopsis_thalianaAT3G25470.189.368882.7243brassica_napusCDY5228988.196781.6393
AT3G25470arabidopsis_thalianaAT3G25470.188.704382.0598brassica_napusCDY0084282.407476.2346
AT3G25470arabidopsis_thalianaAT3G25470.190.365482.392brassica_napusCDY2789184.210576.7802
AT3G25470arabidopsis_thalianaAT3G25470.189.70183.0565brassica_napusCDY1509488.524681.9672
AT3G25470arabidopsis_thalianaAT3G25470.179.40266.7774corchorus_capsularisOMO6539577.850265.4723
AT3G25470arabidopsis_thalianaAT3G25470.172.09359.8007oryza_meridionalisOMERI11G07310.366.769255.3846
AT3G25470arabidopsis_thalianaAT3G25470.196.677794.6844camelina_sativaCsa19g039330.196.357694.3709
AT3G25470arabidopsis_thalianaAT3G25470.194.019991.3621camelina_sativaCsa01g031390.193.708691.0596
AT3G25470arabidopsis_thalianaAT3G25470.194.019991.6944camelina_sativaCsa15g054180.191.585889.3204
AT3G25470arabidopsis_thalianaAT3G25470.126.245821.2625malus_domestica_goldenmRNA:MD05G012750065.289352.8926
AT3G25470arabidopsis_thalianaAT3G25470.174.418663.4552malus_domestica_goldenmRNA:MD10G012430068.085158.0547
AT3G25470arabidopsis_thalianaAT3G25470.175.415358.804daucus_carotaKZN1211865.606951.1561
AT3G25470arabidopsis_thalianaAT3G25470.176.744264.4518rosa_chinensisPRQ2531573.101361.3924
AT3G25470arabidopsis_thalianaAT3G25470.175.083162.7907juglans_regiacds.Jr14_06700_p167.867956.7568
AT3G25470arabidopsis_thalianaAT3G25470.152.491745.1827juglans_regiacds.Jr14_06710_p184.49272.7273
AT3G25470arabidopsis_thalianaAT3G25470.137.541529.9003juglans_regiacds.Jr05_12830_p164.204551.1364
AT3G25470arabidopsis_thalianaAT3G25470.157.807348.505nymphaea_colorataNC1G0101860.1:cds73.417761.6034
AT3G25470arabidopsis_thalianaAT3G25470.174.418661.1296vigna_angularisKOM5848871.565558.7859
AT3G25470arabidopsis_thalianaAT3G25470.163.455252.4917setaria_italicaKQK9406566.783255.2448
AT3G25470arabidopsis_thalianaAT3G25470.172.09358.804setaria_italicaKQL3164861.299450
AT3G25470arabidopsis_thalianaAT3G25470.174.086458.804physcomitrium_patensPp3c24_1560V3.164.080550.8621
AT3G25470arabidopsis_thalianaAT3G25470.174.750863.4552vitis_viniferaVitvi07g01181_P0017563.6667
AT3G25470arabidopsis_thalianaAT3G25470.165.116354.4851cynara_cardunculusKVH9418273.962361.8868

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0008168enables methyltransferase activity1IEAArabidopsis_thaliana(3702)Function
GO:0009507located_in chloroplast1ISMArabidopsis_thaliana(3702)Component
GO:0032259involved_in methylation1IEAArabidopsis_thaliana(3702)Process

Expression