Description

Ensembl ID AT3G24255 Gene ID 822013 Accession -
Symbol AT3G24255 Alias - Full Name RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Status Confidence Length 4558 bases Strand Plus strand
Position 3 : 8788814 - 8793371 RNA binding domain RVT_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G24255 RVT_1 PF00078 1.3e-10 1
AT3G24255 RVT_1 PF00078 1.3e-10 2
AT3G24255 RVT_1 PF00078 2.5e-10 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT3G24255-205 AT3G24255 1546 428aa AT3G24255

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G24255arabidopsis_thalianaAT3G23910.185.985782.4228arabidopsis_thalianaAT3G24255.743.719841.9082

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G24255arabidopsis_thalianaAT3G24255.728.381618.599papaver_somniferumRZC6221654.906535.9813
AT3G24255arabidopsis_thalianaAT3G24255.727.898618.9614papaver_somniferumRZC6873154.481137.0283
AT3G24255arabidopsis_thalianaAT3G24255.729.830921.8599cannabis_sativa_femalecds.evm.model.07.10140.097429.3831
AT3G24255arabidopsis_thalianaAT3G24255.730.434820.6522cannabis_sativa_femalecds.evm.model.07.9428.899119.6101
AT3G24255arabidopsis_thalianaAT3G24255.730.31420.5314theobroma_cacaoEOY0519858.101939.3519
AT3G24255arabidopsis_thalianaAT3G24255.728.140118.7198beta_vulgarisKMT1484455.875337.1703
AT3G24255arabidopsis_thalianaAT3G24255.716.908210.0242cucumis_meloMELO3C006299.2.148.1128.5223
AT3G24255arabidopsis_thalianaAT3G24255.728.381618.8406cucumis_sativusKGN5671956.763337.6812
AT3G24255arabidopsis_thalianaAT3G24255.731.40122.343populus_trichocarpaPotri.001G317900.1.v4.160.606143.1235
AT3G24255arabidopsis_thalianaAT3G24255.728.74418.7198solanum_lycopersicumSolyc09g092180.3.157.349437.3494
AT3G24255arabidopsis_thalianaAT3G24255.728.140119.4444lactuca_sativacds-PLY63197.156.69139.1727
AT3G24255arabidopsis_thalianaAT3G24255.723.309214.2512eragrostis_curvulaTVU1390249.109430.0254
AT3G24255arabidopsis_thalianaAT3G24255.721.980713.285eragrostis_curvulaTVU1390348.924729.5699
AT3G24255arabidopsis_thalianaAT3G24255.723.309214.2512eragrostis_curvulaTVU1393049.109430.0254
AT3G24255arabidopsis_thalianaAT3G24255.728.985519.3237citrullus_lanatusCla97C05G083810.157.97138.6473
AT3G24255arabidopsis_thalianaAT3G24255.725.845416.3043vigna_radiataVradi0246s00080.154.591834.4388
AT3G24255arabidopsis_thalianaAT3G24255.727.173917.5121vigna_unguiculataVigun01g253700.1.v1.256.675136.5239
AT3G24255arabidopsis_thalianaAT3G24255.722.826115.942prunus_aviumPav_sc0003098.1_g130.1.mk:mrna51.358735.8696
AT3G24255arabidopsis_thalianaAT3G24255.723.4316.7874prunus_aviumPav_sc0003098.1_g170.1.mk:mrna52.717437.7717
AT3G24255arabidopsis_thalianaAT3G24255.727.053117.2705phaseolus_vulgarisESW3581655.172435.2217
AT3G24255arabidopsis_thalianaAT3G24255.719.202912.6812asparagus_officinalisONK5827868.831245.4545
AT3G24255arabidopsis_thalianaAT3G24255.726.207716.1836pisum_sativumPsat5g102360.1.cds55.927834.5361
AT3G24255arabidopsis_thalianaAT3G24255.725.966215.3382brachypodium_distachyonKQJ8221651.558830.4556
AT3G24255arabidopsis_thalianaAT3G24255.728.381620.1691quercus_subercds-POE89121.154.778638.9277
AT3G24255arabidopsis_thalianaAT3G24255.729.227120.7729quercus_subercds-POE95382.140.132728.524
AT3G24255arabidopsis_thalianaAT3G24255.72516.6667ananas_comosusAco016088.1.mrna155.49636.9973
AT3G24255arabidopsis_thalianaAT3G24255.742.270539.2512arabidopsis_lyratafgenesh1_pg.C_scaffold_300230483.135477.1972
AT3G24255arabidopsis_thalianaAT3G24255.728.260920.1691quercus_lobataQL10p052654:mrna42.935830.6422
AT3G24255arabidopsis_thalianaAT3G24255.728.381619.3237capsicum_annuumPHT8531065.277844.4444
AT3G24255arabidopsis_thalianaAT3G24255.726.5716.7874lupinus_angustifoliusOIW1469153.268833.6562
AT3G24255arabidopsis_thalianaAT3G24255.736.835833.8164eutrema_salsugineumESQ3726385.915578.8732
AT3G24255arabidopsis_thalianaAT3G24255.742.149839.1304arabidopsis_hallerig24034.t182.897976.9596
AT3G24255arabidopsis_thalianaAT3G24255.726.08717.1498cajanus_cajanC.cajan_03205.t54.545535.8586
AT3G24255arabidopsis_thalianaAT3G24255.727.294718.599solanum_tuberosumPGSC0003DMT40006793258.549239.8964
AT3G24255arabidopsis_thalianaAT3G24255.722.584514.2512setaria_viridisTKW0390344.951928.3654
AT3G24255arabidopsis_thalianaAT3G24255.72514.2512oryza_nivaraONIVA09G09010.150.735328.9216
AT3G24255arabidopsis_thalianaAT3G24255.728.381618.9614ipomoea_trilobaitb04g11200.t255.555637.1158
AT3G24255arabidopsis_thalianaAT3G24255.725.120814.1304oryza_glumipatulaOGLUM04G09580.150.855728.6064
AT3G24255arabidopsis_thalianaAT3G24255.722.222212.6812zea_maysZm00001eb085830_P00339.569922.5806
AT3G24255arabidopsis_thalianaAT3G24255.729.106318.4783sesamum_indicumSIN_1001183.t56.97436.1702
AT3G24255arabidopsis_thalianaAT3G24255.718.961412.0773lolium_perennecds.KYUSt_chr2.3306750.645232.2581
AT3G24255arabidopsis_thalianaAT3G24255.740.458934.2995brassica_junceacds.BjuB01g18690S63.809554.0952
AT3G24255arabidopsis_thalianaAT3G24255.724.275414.372oryza_brachyanthaOB04G17290.159.117635
AT3G24255arabidopsis_thalianaAT3G24255.718.840613.0435glycine_maxKRG973376545
AT3G24255arabidopsis_thalianaAT3G24255.727.053117.1498glycine_maxKRH3158057.583536.5039
AT3G24255arabidopsis_thalianaAT3G24255.727.053116.6667corymbia_citriodoracds-KAF7848350.153.975933.253
AT3G24255arabidopsis_thalianaAT3G24255.728.019318.1159corymbia_citriodoracds-KAF8034790.156.174336.3196
AT3G24255arabidopsis_thalianaAT3G24255.726.328515.0966aegilops_tauschiiAET2Gv20635300.452.028629.8329
AT3G24255arabidopsis_thalianaAT3G24255.726.328515.3382triticum_urartuTuG1812G0200003138.01.T0152.028630.3103
AT3G24255arabidopsis_thalianaAT3G24255.722.826113.4058oryza_longistaminataKN539460.1_FGP00954.466931.9885
AT3G24255arabidopsis_thalianaAT3G24255.726.932417.9952fraxinus_excelsiorFRAEX38873_v2_000044350.1.cds55.19836.8812
AT3G24255arabidopsis_thalianaAT3G24255.725.724615.3382avena_sativa_sangAVESA.00010b.r2.2DG0332690.1.CDS50.714330.2381
AT3G24255arabidopsis_thalianaAT3G24255.725.483114.9758avena_sativa_sangAVESA.00010b.r2.2AG0217540.1.CDS5029.3839
AT3G24255arabidopsis_thalianaAT3G24255.725.120814.8551avena_sativa_sangAVESA.00010b.r2.2CG0296590.1.CDS49.523829.2857
AT3G24255arabidopsis_thalianaAT3G24255.727.415515.8213musa_acuminataMa06_p22040.153.664330.9693
AT3G24255arabidopsis_thalianaAT3G24255.72514.2512oryza_glaberrimaORGLA02G0348900.150.611228.8509
AT3G24255arabidopsis_thalianaAT3G24255.72514.2512oryza_glaberrimaORGLA04G0070700.150.611228.8509
AT3G24255arabidopsis_thalianaAT3G24255.725.724615.0966hordeum_vulgareHORVU.MOREX.r3.2HG0161390.251.69930.3398
AT3G24255arabidopsis_thalianaAT3G24255.726.207715.3382triticum_turgidumTRITD2Av1G167050.251.7930.3103
AT3G24255arabidopsis_thalianaAT3G24255.726.328515.4589triticum_turgidumTRITD2Bv1G139230.252.153130.622
AT3G24255arabidopsis_thalianaAT3G24255.723.188413.4058panicum_halliiPUZ4677446.153826.6827
AT3G24255arabidopsis_thalianaAT3G24255.721.739111.5942echinochloa_crusgalliscaffold100.233.cds43.373523.1325
AT3G24255arabidopsis_thalianaAT3G24255.720.772910.8696echinochloa_crusgalliscaffold21.124.cds44.329923.1959
AT3G24255arabidopsis_thalianaAT3G24255.720.772911.4734echinochloa_crusgalliscaffold81.194.cds43.989824.2967
AT3G24255arabidopsis_thalianaAT3G24255.728.019317.9952actinidia_chinensisPSS2395959.033137.9135
AT3G24255arabidopsis_thalianaAT3G24255.715.821310.7488citrus_clementinaESR3418355.04237.395
AT3G24255arabidopsis_thalianaAT3G24255.722.946913.285oryza_indicaBGIOSGA016237-PA54.75531.7003
AT3G24255arabidopsis_thalianaAT3G24255.724.879214.372oryza_indicaBGIOSGA016235-PA50.490229.1667
AT3G24255arabidopsis_thalianaAT3G24255.724.879214.2512oryza_sativaOs04t0379800-0150.490228.9216
AT3G24255arabidopsis_thalianaAT3G24255.724.879214.2512oryza_rufipogonORUFI04G10990.150.490228.9216
AT3G24255arabidopsis_thalianaAT3G24255.726.08715.0966secale_cerealeSECCE2Rv1G0100320.151.428629.7619
AT3G24255arabidopsis_thalianaAT3G24255.733.695722.9469gossypium_raimondiiKJB6129465.03544.289
AT3G24255arabidopsis_thalianaAT3G24255.725.120814.4928oryza_punctataOPUNC04G07980.150.363229.0557
AT3G24255arabidopsis_thalianaAT3G24255.724.154614.2512eragrostis_tefEt_7B_054054.CDS55.555632.7778
AT3G24255arabidopsis_thalianaAT3G24255.725.724614.9758eragrostis_tefEt_7A_051304.CDS44.008325.6198
AT3G24255arabidopsis_thalianaAT3G24255.717.39139.54106eragrostis_tefEt_7A_050972.CDS29.268316.0569
AT3G24255arabidopsis_thalianaAT3G24255.723.550712.9227sorghum_bicolorEES1200848.7526.75
AT3G24255arabidopsis_thalianaAT3G24255.729.589418.599coffea_canephoraCDP1116756.58235.5658
AT3G24255arabidopsis_thalianaAT3G24255.732.367121.8599manihot_esculentaOAY2829463.809543.0952
AT3G24255arabidopsis_thalianaAT3G24255.727.65717.3913kalanchoe_fedtschenkoiKaladp0076s0416.1.v1.156.543235.5556
AT3G24255arabidopsis_thalianaAT3G24255.718.478311.9565trifolium_pratenseTp57577_TGAC_v2_mRNA2499657.089636.9403
AT3G24255arabidopsis_thalianaAT3G24255.725.241520.5314brassica_rapa_ro18A07g504180.1_BraROA.164.906852.795
AT3G24255arabidopsis_thalianaAT3G24255.718.59913.0435eucalyptus_grandisKCW5723162.857144.0816
AT3G24255arabidopsis_thalianaAT3G24255.727.415516.4251dioscorea_rotundataDRNTG_27478.154.047632.381
AT3G24255arabidopsis_thalianaAT3G24255.729.589421.3768prunus_persicaONI2878058.894242.5481
AT3G24255arabidopsis_thalianaAT3G24255.725.483114.9758avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0000955.15029.3839
AT3G24255arabidopsis_thalianaAT3G24255.725.120814.8551avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0001666.149.523829.2857
AT3G24255arabidopsis_thalianaAT3G24255.725.724615.3382avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0003515.148.081328.6682
AT3G24255arabidopsis_thalianaAT3G24255.724.154614.7343chenopodium_quinoaAUR62018570-RA:cds51.413931.3625
AT3G24255arabidopsis_thalianaAT3G24255.726.5716.5459chenopodium_quinoaAUR62020846-RA:cds47.109229.3362
AT3G24255arabidopsis_thalianaAT3G24255.714.97588.69565digitaria_exilisDexi7A01G0004050.1:cds45.255526.2774
AT3G24255arabidopsis_thalianaAT3G24255.721.014512.0773digitaria_exilisDexi7B01G0005000.1:cds43.939425.2525
AT3G24255arabidopsis_thalianaAT3G24255.72514.2512oryza_barthiiOBART04G09950.150.611228.8509
AT3G24255arabidopsis_thalianaAT3G24255.738.526633.2126brassica_oleraceaBo7g038810.138.855133.4957
AT3G24255arabidopsis_thalianaAT3G24255.729.468620.8937prunus_dulcisVVA3745058.653841.5865
AT3G24255arabidopsis_thalianaAT3G24255.729.468619.8068corylus_avellanaCav04g16970.t146.564931.2977
AT3G24255arabidopsis_thalianaAT3G24255.72513.8889leersia_perrieriLPERR04G06820.154.617430.343
AT3G24255arabidopsis_thalianaAT3G24255.727.898618.7198nicotiana_attenuataOIT0599555.662737.3494
AT3G24255arabidopsis_thalianaAT3G24255.729.710119.2029olea_europaeaOE9A029067C156.036436.2187
AT3G24255arabidopsis_thalianaAT3G24255.732.729523.0676pistacia_veracds-EVM0027031.162.87744.3155
AT3G24255arabidopsis_thalianaAT3G24255.738.526633.2126brassica_napusCDX8514238.855133.4957
AT3G24255arabidopsis_thalianaAT3G24255.739.251233.8164brassica_napusCDX7747678.313367.4699
AT3G24255arabidopsis_thalianaAT3G24255.732.850222.8261corchorus_capsularisOMO7100162.96343.75
AT3G24255arabidopsis_thalianaAT3G24255.724.879214.2512oryza_meridionalisOMERI04G09190.149.047628.0952
AT3G24255arabidopsis_thalianaAT3G24255.741.183637.9227camelina_sativaCsa01g028050.147.42743.6718
AT3G24255arabidopsis_thalianaAT3G24255.734.178732.1256camelina_sativaCsa15g006110.191.290385.8064
AT3G24255arabidopsis_thalianaAT3G24255.728.864720.4106malus_domestica_goldenmRNA:MD04G001340059.012341.7284
AT3G24255arabidopsis_thalianaAT3G24255.729.830919.686daucus_carotaKZM8593860.539239.951
AT3G24255arabidopsis_thalianaAT3G24255.718.357512.6812rosa_chinensisPRQ3844750.498334.8837
AT3G24255arabidopsis_thalianaAT3G24255.729.830920.0483juglans_regiacds.Jr12_08910_p159.951540.2913
AT3G24255arabidopsis_thalianaAT3G24255.722.584513.0435nymphaea_colorataNC2G0001300.1:cds44.523825.7143
AT3G24255arabidopsis_thalianaAT3G24255.727.053117.3913vigna_angularisKOM2539856.708936.4557
AT3G24255arabidopsis_thalianaAT3G24255.716.666710.8696setaria_italicaKQK9689356.326536.7347
AT3G24255arabidopsis_thalianaAT3G24255.732.125620.6522vitis_viniferaVitvi05g02056_P00162.588240.2353
AT3G24255arabidopsis_thalianaAT3G24255.724.879216.3043cynara_cardunculusKVH9098952.151934.1772

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003674enables molecular_function1NDArabidopsis_thaliana(3702)Function
GO:0005576located_in extracellular region1ISMArabidopsis_thaliana(3702)Component
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0008150involved_in biological_process1NDArabidopsis_thaliana(3702)Process

Expression