Description

Ensembl ID AT3G18790 Gene ID 821412 Accession -
Symbol AT3G18790 Alias - Full Name pre-mRNA-splicing factor ISY1-like protein
Status Confidence Length 1922 bases Strand Plus strand
Position 3 : 6477661 - 6479582 RNA binding domain Isy1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G18790 Isy1 PF06246 2.6e-88 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT3G18790-201 AT3G18790 1408 300aa AT3G18790

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G18790

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G18790arabidopsis_thalianaAT3G18790.168.333353.3333chlamydomonas_reinhardtiiPNW7721674.275457.971
AT3G18790arabidopsis_thalianaAT3G18790.18266marchantia_polymorphaPTQ4320883.95967.5768
AT3G18790arabidopsis_thalianaAT3G18790.188.666776.3333papaver_somniferumRZC4902980.606169.3939
AT3G18790arabidopsis_thalianaAT3G18790.19078.3333cannabis_sativa_femalecds.novel_model_4850_5bd9a17a89.70178.0731
AT3G18790arabidopsis_thalianaAT3G18790.19283.3333theobroma_cacaoEOX9240291.694483.0565
AT3G18790arabidopsis_thalianaAT3G18790.19178.3333beta_vulgarisKMT0457491.610778.8591
AT3G18790arabidopsis_thalianaAT3G18790.191.666782.6667cucumis_meloMELO3C023475.2.190.759181.8482
AT3G18790arabidopsis_thalianaAT3G18790.191.666782.3333cucumis_sativusKGN4521190.759181.5182
AT3G18790arabidopsis_thalianaAT3G18790.191.333384populus_trichocarpaPotri.017G060200.1.v4.190.42983.1683
AT3G18790arabidopsis_thalianaAT3G18790.189.666779solanum_lycopersicumSolyc05g051070.3.186.774276.4516
AT3G18790arabidopsis_thalianaAT3G18790.156.666737caenorhabditis_elegansF53B7.3.163.670441.573
AT3G18790arabidopsis_thalianaAT3G18790.191.666781.6667lactuca_sativacds-PLY83467.191.362181.3953
AT3G18790arabidopsis_thalianaAT3G18790.16041.3333ostreococcus_lucimarinusABO9557566.420745.7565
AT3G18790arabidopsis_thalianaAT3G18790.18471.6667eragrostis_curvulaTVU2936675.675764.5646
AT3G18790arabidopsis_thalianaAT3G18790.184.666772.3333eragrostis_curvulaTVU0350681.67269.7749
AT3G18790arabidopsis_thalianaAT3G18790.191.333382citrullus_lanatusCla97C09G178380.190.42981.1881
AT3G18790arabidopsis_thalianaAT3G18790.191.333382.6667citrullus_lanatusCla97C01G004800.190.42981.8482
AT3G18790arabidopsis_thalianaAT3G18790.149.666746.3333vigna_radiataVradi06g05290.190.853784.7561
AT3G18790arabidopsis_thalianaAT3G18790.186.333373amborella_trichopodaERN1601787.573.9865
AT3G18790arabidopsis_thalianaAT3G18790.18773.6667amborella_trichopodaERN0487188.175774.6622
AT3G18790arabidopsis_thalianaAT3G18790.190.333381.3333vigna_unguiculataVigun08g148400.1.v1.2.CDS.190.635581.6054
AT3G18790arabidopsis_thalianaAT3G18790.140.666736.3333prunus_aviumPav_sc0000671.1_g280.1.mk:mrna89.051179.562
AT3G18790arabidopsis_thalianaAT3G18790.150.666744.6667prunus_aviumPav_sc0001461.1_g180.1.mk:mrna88.372177.907
AT3G18790arabidopsis_thalianaAT3G18790.15044.3333prunus_aviumPav_sc0001398.1_g010.1.mk:mrna87.209377.3256
AT3G18790arabidopsis_thalianaAT3G18790.12523prunus_aviumPav_sc0000412.1_g140.1.mk:mrna90.361483.1325
AT3G18790arabidopsis_thalianaAT3G18790.19080.6667phaseolus_vulgarisESW1386789.70180.3987
AT3G18790arabidopsis_thalianaAT3G18790.184.333375phaseolus_vulgarisESW1853689.084579.2253
AT3G18790arabidopsis_thalianaAT3G18790.188.666780pisum_sativumPsat2g008160.1.cds187.788879.2079
AT3G18790arabidopsis_thalianaAT3G18790.18170.3333brachypodium_distachyonPNT6898981.818271.0438
AT3G18790arabidopsis_thalianaAT3G18790.189.333378.6667quercus_subercds-POE44591.179.525270.0297
AT3G18790arabidopsis_thalianaAT3G18790.18877.3333quercus_subercds-POF20805.152.485146.1233
AT3G18790arabidopsis_thalianaAT3G18790.167.666758.6667ananas_comosusAco031342.1.mrna1.cds183.196772.1311
AT3G18790arabidopsis_thalianaAT3G18790.155.666748ananas_comosusAco000163.1.mrna182.26670.936
AT3G18790arabidopsis_thalianaAT3G18790.189.333377.3333ananas_comosusAco022429.1.mrna1.cds186.173674.5981
AT3G18790arabidopsis_thalianaAT3G18790.19997.3333arabidopsis_lyratafgenesh2_kg.3__2091__AT3G18790.19997.3333
AT3G18790arabidopsis_thalianaAT3G18790.18978.6667quercus_lobataQL09p054497:mrna69.531261.4583
AT3G18790arabidopsis_thalianaAT3G18790.187.666776.6667quercus_lobataQL12p002363:mrna:CDS:386.798775.9076
AT3G18790arabidopsis_thalianaAT3G18790.151.666741capsicum_annuumPHT6746364.583351.25
AT3G18790arabidopsis_thalianaAT3G18790.191.666782.3333lupinus_angustifoliusOIW0823290.163980.9836
AT3G18790arabidopsis_thalianaAT3G18790.19181.3333lupinus_angustifoliusOIV9912990.397480.7947
AT3G18790arabidopsis_thalianaAT3G18790.19589eutrema_salsugineumESQ4801695.637689.5973
AT3G18790arabidopsis_thalianaAT3G18790.19997.6667arabidopsis_hallerig21633.t1.cds19997.6667
AT3G18790arabidopsis_thalianaAT3G18790.18071.6667cajanus_cajanC.cajan_35778.t91.254881.749
AT3G18790arabidopsis_thalianaAT3G18790.179.333371.3333cajanus_cajanC.cajan_14659.t90.839781.6794
AT3G18790arabidopsis_thalianaAT3G18790.19078.6667solanum_tuberosumPGSC0003DMT40001797890.30178.9298
AT3G18790arabidopsis_thalianaAT3G18790.185.333373setaria_viridisTKW4013682.315170.418
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667oryza_nivaraONIVA02G26050.182.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.19080.6667ipomoea_trilobaitb05g22000.t191.216281.7568
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667oryza_glumipatulaOGLUM02G23500.182.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.140.666730zea_maysZm00001eb424510_P00135.057525.8621
AT3G18790arabidopsis_thalianaAT3G18790.18673.6667zea_maysZm00001eb246450_P00182.958271.0611
AT3G18790arabidopsis_thalianaAT3G18790.143.333334.3333zea_maysZm00001eb267310_P00148.327138.29
AT3G18790arabidopsis_thalianaAT3G18790.17262sesamum_indicumSIN_1025355.t86.474.4
AT3G18790arabidopsis_thalianaAT3G18790.18169.6667lolium_perennecds.KYUSt_chr6.1894680.730969.4352
AT3G18790arabidopsis_thalianaAT3G18790.177.666762.6667chara_brauniiGBG4403572.360258.3851
AT3G18790arabidopsis_thalianaAT3G18790.161.333343.3333ciona_savignyiENSCSAVP0000001532660.927243.0464
AT3G18790arabidopsis_thalianaAT3G18790.193.666787brassica_junceacds.BjuB01g12520S94.295387.5839
AT3G18790arabidopsis_thalianaAT3G18790.193.666787brassica_junceacds.BjuA05g26490S94.612887.8788
AT3G18790arabidopsis_thalianaAT3G18790.193.666786.6667brassica_junceacds.BjuB07g43210S94.612887.5421
AT3G18790arabidopsis_thalianaAT3G18790.16155brassica_junceacds.BjuA01g10000S82.062873.991
AT3G18790arabidopsis_thalianaAT3G18790.18572.6667oryza_brachyanthaOB02G30580.181.993670.0965
AT3G18790arabidopsis_thalianaAT3G18790.18981glycine_maxKRH1527389.297781.2709
AT3G18790arabidopsis_thalianaAT3G18790.188.666780.6667glycine_maxKRH3815188.963280.9365
AT3G18790arabidopsis_thalianaAT3G18790.189.333381.3333glycine_maxKRH5515989.036581.0631
AT3G18790arabidopsis_thalianaAT3G18790.190.333379.6667corymbia_citriodoracds-KAF8033641.190.333379.6667
AT3G18790arabidopsis_thalianaAT3G18790.184.666773.6667aegilops_tauschiiAET6Gv20566300.481.67271.0611
AT3G18790arabidopsis_thalianaAT3G18790.184.333373triticum_urartuTuG1812G0600002107.01.T01.cds29097281.350570.418
AT3G18790arabidopsis_thalianaAT3G18790.152.666743.6667oryza_longistaminataKN539183.1_FGP01377.832564.532
AT3G18790arabidopsis_thalianaAT3G18790.121.333319.6667fraxinus_excelsiorFRAEX38873_v2_000327990.1.cds186.486579.7297
AT3G18790arabidopsis_thalianaAT3G18790.18573.6667avena_sativa_sangAVESA.00010b.r2.6CG1077810.1.CDS.181.993671.0611
AT3G18790arabidopsis_thalianaAT3G18790.18573.6667avena_sativa_sangAVESA.00010b.r2.6DG1163550.1.CDS.181.993671.0611
AT3G18790arabidopsis_thalianaAT3G18790.18573.6667avena_sativa_sangAVESA.00010b.r2.6AG1036790.1.CDS.181.993671.0611
AT3G18790arabidopsis_thalianaAT3G18790.18776.3333musa_acuminataMa09_p15600.185.016374.5928
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667oryza_glaberrimaORGLA02G0199300.182.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.18071hordeum_vulgareHORVU.MOREX.r3.6HG0550340.1.CDS179.470270.5298
AT3G18790arabidopsis_thalianaAT3G18790.18071hordeum_vulgareHORVU.MOREX.r3.6HG0550330.1.CDS179.470270.5298
AT3G18790arabidopsis_thalianaAT3G18790.184.666773.6667hordeum_vulgareHORVU.MOREX.r3.6HG0592240.1.CDS181.67271.0611
AT3G18790arabidopsis_thalianaAT3G18790.181.333371.3333hordeum_vulgareHORVU.MOREX.r3.6HG0546070.1.CDS178.205168.5897
AT3G18790arabidopsis_thalianaAT3G18790.184.666773.6667triticum_turgidumTRITD6Bv1G127630.181.67271.0611
AT3G18790arabidopsis_thalianaAT3G18790.184.333373triticum_turgidumTRITD6Av1G134040.181.350570.418
AT3G18790arabidopsis_thalianaAT3G18790.17361triticum_turgidumTRITD3Bv1G280910.177.385264.6643
AT3G18790arabidopsis_thalianaAT3G18790.185.333373panicum_halliiPUZ7642182.315170.418
AT3G18790arabidopsis_thalianaAT3G18790.185.333373.6667echinochloa_crusgalliscaffold139.163.cds82.315171.0611
AT3G18790arabidopsis_thalianaAT3G18790.18573.3333echinochloa_crusgalliscaffold17.345.cds81.730870.5128
AT3G18790arabidopsis_thalianaAT3G18790.185.333373.3333echinochloa_crusgalliscaffold123.19.cds65.139955.9796
AT3G18790arabidopsis_thalianaAT3G18790.188.333379.3333actinidia_chinensisPSS2667090.136180.9524
AT3G18790arabidopsis_thalianaAT3G18790.187.333378citrus_clementinaESR6033187.043277.7409
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667oryza_indicaBGIOSGA006098-PA82.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.17054selaginella_moellendorffiiEFJ2651879.847961.597
AT3G18790arabidopsis_thalianaAT3G18790.17758selaginella_moellendorffiiEFJ147737758
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667oryza_sativaOs02t0602500-0282.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.163.666749.6667homo_sapiensENSP0000037697367.017552.2807
AT3G18790arabidopsis_thalianaAT3G18790.184.666773.6667triticum_aestivumTraesCS6B02G244300.1.cds181.67271.0611
AT3G18790arabidopsis_thalianaAT3G18790.159.333351triticum_aestivumTraesCS3A02G532300.1.cds180.54369.2308
AT3G18790arabidopsis_thalianaAT3G18790.184.666773.6667triticum_aestivumTraesCS6D02G197000.1.cds181.67271.0611
AT3G18790arabidopsis_thalianaAT3G18790.172.333360.6667triticum_aestivumTraesCS3B02G609900.1.cds176.140463.8596
AT3G18790arabidopsis_thalianaAT3G18790.184.333372.6667triticum_aestivumTraesCS6A02G214300.1.cds181.350570.0965
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667oryza_rufipogonORUFI02G24550.182.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.171.666762.3333secale_cerealeSECCE6Rv1G0439160.1.CDS.181.132170.566
AT3G18790arabidopsis_thalianaAT3G18790.18573.6667secale_cerealeSECCE6Rv1G0396940.1.CDS.181.993671.0611
AT3G18790arabidopsis_thalianaAT3G18790.148.333339.3333gossypium_raimondiiKJB2006783.81568.2081
AT3G18790arabidopsis_thalianaAT3G18790.191.666782.3333gossypium_raimondiiKJB1838891.973282.6087
AT3G18790arabidopsis_thalianaAT3G18790.19180.3333helianthus_annuusCDS:HanXRQr2_Chr03g0135951.191.304380.602
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667oryza_punctataOPUNC02G21090.182.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.18471.3333eragrostis_tefEt_1B_014442.CDS81.290369.0323
AT3G18790arabidopsis_thalianaAT3G18790.184.666771.3333eragrostis_tefEt_1A_009614.CDS77.203665.0456
AT3G18790arabidopsis_thalianaAT3G18790.19081.3333medicago_truncatulaAET0075089.108980.5281
AT3G18790arabidopsis_thalianaAT3G18790.185.666773.3333sorghum_bicolorEES0710983.171571.1974
AT3G18790arabidopsis_thalianaAT3G18790.184.666773.6667triticum_dicoccoidesTRIDC6BG039550.181.67271.0611
AT3G18790arabidopsis_thalianaAT3G18790.17260triticum_dicoccoidesTRIDC3BG086850.176.325163.6042
AT3G18790arabidopsis_thalianaAT3G18790.184.333373triticum_dicoccoidesTRIDC6AG033220.181.350570.418
AT3G18790arabidopsis_thalianaAT3G18790.188.333378.3333coffea_canephoraCDP1278788.333378.3333
AT3G18790arabidopsis_thalianaAT3G18790.19184manihot_esculentaOAY5975290.397483.4437
AT3G18790arabidopsis_thalianaAT3G18790.188.333377.3333kalanchoe_fedtschenkoiKaladp0040s0520.1.v1.1.CDS.188.628877.592
AT3G18790arabidopsis_thalianaAT3G18790.189.333381.3333trifolium_pratenseTp57577_TGAC_v2_mRNA890488.448880.5281
AT3G18790arabidopsis_thalianaAT3G18790.190.666779.3333eucalyptus_grandisKCW7860190.666779.3333
AT3G18790arabidopsis_thalianaAT3G18790.184.333375.3333dioscorea_rotundataDRNTG_02183.188.153378.7456
AT3G18790arabidopsis_thalianaAT3G18790.19081prunus_persicaONH9504489.70180.7309
AT3G18790arabidopsis_thalianaAT3G18790.171.666764prunus_persicaONI0445390.336180.6723
AT3G18790arabidopsis_thalianaAT3G18790.18573.6667avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0001175.271.629262.0787
AT3G18790arabidopsis_thalianaAT3G18790.18573.6667avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0001487.171.428661.9048
AT3G18790arabidopsis_thalianaAT3G18790.181.666771.3333chenopodium_quinoaAUR62014898-RA:cds92.452880.7547
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667oryza_barthiiOBART02G23140.182.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.193.666787.3333brassica_oleraceaBo5g117030.194.932488.5135
AT3G18790arabidopsis_thalianaAT3G18790.15144.3333brassica_oleraceaBo1g116180.180.104769.6335
AT3G18790arabidopsis_thalianaAT3G18790.139.666734.3333prunus_dulcisVVA1265790.151578.0303
AT3G18790arabidopsis_thalianaAT3G18790.158.333341galdieria_sulphurariaEME3167965.543146.0674
AT3G18790arabidopsis_thalianaAT3G18790.174.333367.3333corylus_avellanaCav03g09650.t1.cds177.430670.1389
AT3G18790arabidopsis_thalianaAT3G18790.185.333372.6667leersia_perrieriLPERR02G18840.182.315170.0965
AT3G18790arabidopsis_thalianaAT3G18790.190.333379.6667nicotiana_attenuataOIT0313490.939680.2013
AT3G18790arabidopsis_thalianaAT3G18790.189.666780olea_europaeaOE9A084542C189.966680.2676
AT3G18790arabidopsis_thalianaAT3G18790.17364.3333olea_europaeaOE9A106840C287.951877.51
AT3G18790arabidopsis_thalianaAT3G18790.138.666721.6667saccharomyces_cerevisiaeYJR050W49.361727.6596
AT3G18790arabidopsis_thalianaAT3G18790.190.666780.6667pistacia_veracds-EVM0013039.190.969980.9365
AT3G18790arabidopsis_thalianaAT3G18790.190.666780.6667pistacia_veracds-EVM0011540.190.969980.9365
AT3G18790arabidopsis_thalianaAT3G18790.157.666743.6667drosophila_melanogasterFBpp008130563.602948.1618
AT3G18790arabidopsis_thalianaAT3G18790.17669.6667brassica_napusCDX9227485.393378.2772
AT3G18790arabidopsis_thalianaAT3G18790.17770.6667brassica_napusCDX9931486.516979.4007
AT3G18790arabidopsis_thalianaAT3G18790.142.666738.6667brassica_napusCDY1854687.074878.9116
AT3G18790arabidopsis_thalianaAT3G18790.173.333365corchorus_capsularisOMO8673889.430979.2683
AT3G18790arabidopsis_thalianaAT3G18790.192.666784.6667corchorus_capsularisOMO5586092.358884.3854
AT3G18790arabidopsis_thalianaAT3G18790.197.666795.3333camelina_sativaCsa15g026430.1.cds197.666795.3333
AT3G18790arabidopsis_thalianaAT3G18790.19895.3333camelina_sativaCsa19g026210.1.cds19895.3333
AT3G18790arabidopsis_thalianaAT3G18790.197.666795.3333camelina_sativaCsa01g021700.163.557562.039
AT3G18790arabidopsis_thalianaAT3G18790.189.333379.3333malus_domestica_goldenCDS:MD12G0180700.189.036579.0698
AT3G18790arabidopsis_thalianaAT3G18790.187.666776daucus_carotaKZN0272488.851377.027
AT3G18790arabidopsis_thalianaAT3G18790.187.333375.6667daucus_carotaKZN0920688.513576.6892
AT3G18790arabidopsis_thalianaAT3G18790.188.333378.3333rosa_chinensisPRQ3823287.748377.8146
AT3G18790arabidopsis_thalianaAT3G18790.188.333380.3333juglans_regiacds.Jr02_11260_p187.458779.538
AT3G18790arabidopsis_thalianaAT3G18790.188.333380.3333juglans_regiacds.Jr02_11270_p187.458779.538
AT3G18790arabidopsis_thalianaAT3G18790.188.333380.3333juglans_regiacds.Jr02_11280_p187.458779.538
AT3G18790arabidopsis_thalianaAT3G18790.18674.3333nymphaea_colorataNC9G0146960.1:cds87.162275.3378
AT3G18790arabidopsis_thalianaAT3G18790.150.666741vigna_angularisKOM4527465.517253.0172
AT3G18790arabidopsis_thalianaAT3G18790.15041.6667vigna_angularisKOM4527386.206971.8391
AT3G18790arabidopsis_thalianaAT3G18790.17565.3333vigna_angularisKOM4527685.551374.5247
AT3G18790arabidopsis_thalianaAT3G18790.15950vigna_angularisKOM4700981.944469.4444
AT3G18790arabidopsis_thalianaAT3G18790.185.333373setaria_italicaKQL3036282.315170.418
AT3G18790arabidopsis_thalianaAT3G18790.178.666763physcomitrium_patensPp3c13_15060V3.180.821964.726
AT3G18790arabidopsis_thalianaAT3G18790.188.666780.6667vitis_viniferaVitvi04g01610_P00189.261781.2081
AT3G18790arabidopsis_thalianaAT3G18790.19181cynara_cardunculusKVH883509181

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0005829located_in cytosol1HDAArabidopsis_thaliana(3702)Component
GO:0010468acts_upstream_of_or_within regulation of gene expression1IEAArabidopsis_thaliana(3702)Process
GO:0016070acts_upstream_of_or_within RNA metabolic process1IEAArabidopsis_thaliana(3702)Process
GO:0019538acts_upstream_of_or_within protein metabolic process1IEAArabidopsis_thaliana(3702)Process
GO:0048316acts_upstream_of_or_within seed development1IEAArabidopsis_thaliana(3702)Process
GO:0048580acts_upstream_of_or_within regulation of post-embryonic development1IEAArabidopsis_thaliana(3702)Process
GO:0051321acts_upstream_of_or_within meiotic cell cycle1IEAArabidopsis_thaliana(3702)Process

Expression