Description

Ensembl ID AT3G17740 Gene ID Accession -
Symbol AT3G17740 Alias - Full Name NA
Status Confidence Length 5173 bases Strand Minus strand
Position 3 : 6067684 - 6072856 RNA binding domain NRDE-2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G17740 NRDE-2 PF08424 7.6e-89 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT3G17740-201 AT3G17740 3811 1149aa AT3G17740

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G17740arabidopsis_thalianaAT3G17712.292.640291.0047arabidopsis_thalianaAT3G17740.169.016567.7981

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G17740arabidopsis_thalianaAT3G17740.141.601424.8912chlamydomonas_reinhardtiiPNW7421126.853916.0674
AT3G17740arabidopsis_thalianaAT3G17740.148.302933.1593marchantia_polymorphaPTQ2814356.690538.9173
AT3G17740arabidopsis_thalianaAT3G17740.164.664949.0862papaver_somniferumRZC7021465.232749.5171
AT3G17740arabidopsis_thalianaAT3G17740.168.059252.4804ficus_caricaFCD_00031430-RA:cds66.780551.4944
AT3G17740arabidopsis_thalianaAT3G17740.171.279456.4839theobroma_cacaoEOY2154769.82155.3282
AT3G17740arabidopsis_thalianaAT3G17740.165.448249.9565beta_vulgarisKMT0371665.164649.74
AT3G17740arabidopsis_thalianaAT3G17740.165.274249.6954cucumis_meloMELO3C002158.2.167.385451.3028
AT3G17740arabidopsis_thalianaAT3G17740.169.190653.2637cucumis_sativusKGN6420168.29952.5773
AT3G17740arabidopsis_thalianaAT3G17740.169.277653.96populus_trichocarpaPotri.015G033300.2.v4.167.17352.3207
AT3G17740arabidopsis_thalianaAT3G17740.169.190653.3507solanum_lycopersicumSolyc03g098160.3.167.372951.9492
AT3G17740arabidopsis_thalianaAT3G17740.130.635311.9234caenorhabditis_elegansT01E8.5.127.716510.7874
AT3G17740arabidopsis_thalianaAT3G17740.167.798150.4787lactuca_sativacds-PLY64842.167.562950.3036
AT3G17740arabidopsis_thalianaAT3G17740.132.288919.0601ostreococcus_lucimarinusABO9412041.360124.4147
AT3G17740arabidopsis_thalianaAT3G17740.164.490945.5178eragrostis_curvulaTVU2870163.714544.9699
AT3G17740arabidopsis_thalianaAT3G17740.164.403845.4308eragrostis_curvulaTVU2872163.628544.8839
AT3G17740arabidopsis_thalianaAT3G17740.169.451753.8729citrullus_lanatusCla97C01G013940.168.556753.1787
AT3G17740arabidopsis_thalianaAT3G17740.163.881648.8251vigna_radiataVradi01g05640.167.774751.8006
AT3G17740arabidopsis_thalianaAT3G17740.169.277653.3507vigna_unguiculataVigun04g038100.2.v1.268.443752.7085
AT3G17740arabidopsis_thalianaAT3G17740.169.538754.3081prunus_aviumPav_sc0000103.1_g1330.1.mk:mrna65.438251.1057
AT3G17740arabidopsis_thalianaAT3G17740.169.277653.7859phaseolus_vulgarisESW2461268.384953.0928
AT3G17740arabidopsis_thalianaAT3G17740.161.966943.255asparagus_officinalisONK6707862.346843.5201
AT3G17740arabidopsis_thalianaAT3G17740.169.190653.0026pisum_sativumPsat1g124600.1.cds68.29952.3196
AT3G17740arabidopsis_thalianaAT3G17740.163.359444.9086brachypodium_distachyonKQK0169062.975844.6367
AT3G17740arabidopsis_thalianaAT3G17740.120.626613.8381quercus_subercds-POF24454.148.367332.449
AT3G17740arabidopsis_thalianaAT3G17740.164.055746.9104ananas_comosusAco002632.1.mrna161.796845.2561
AT3G17740arabidopsis_thalianaAT3G17740.195.474392.6893arabidopsis_lyratafgenesh2_kg.3__1956__AT3G17740.195.143192.3677
AT3G17740arabidopsis_thalianaAT3G17740.171.540556.5709quercus_lobataQL10p033145:mrna50.460439.9018
AT3G17740arabidopsis_thalianaAT3G17740.168.059252.2193capsicum_annuumPHT8782165.54950.2934
AT3G17740arabidopsis_thalianaAT3G17740.112.619710.0957lupinus_angustifoliusOIW2150381.005664.8045
AT3G17740arabidopsis_thalianaAT3G17740.191.296885.0305eutrema_salsugineumESQ4815091.856485.5517
AT3G17740arabidopsis_thalianaAT3G17740.195.648492.7763arabidopsis_hallerig16129.t195.316692.4545
AT3G17740arabidopsis_thalianaAT3G17740.168.929553.3507cajanus_cajanC.cajan_26163.t67.519252.2592
AT3G17740arabidopsis_thalianaAT3G17740.164.055745.953setaria_viridisTKW4182263.778245.7539
AT3G17740arabidopsis_thalianaAT3G17740.161.966944.0383oryza_nivaraONIVA02G36270.261.805643.9236
AT3G17740arabidopsis_thalianaAT3G17740.119.843315.3177ipomoea_trilobaitb06g09710.t168.468552.8529
AT3G17740arabidopsis_thalianaAT3G17740.113.57710.0957ipomoea_trilobaitb06g09690.t172.558153.9535
AT3G17740arabidopsis_thalianaAT3G17740.121.67115.4917ipomoea_trilobaitb01g11290.t164.675346.2338
AT3G17740arabidopsis_thalianaAT3G17740.127.502221.3229ipomoea_trilobaitb06g09700.t172.643756.3218
AT3G17740arabidopsis_thalianaAT3G17740.157.093140.1218oryza_glumipatulaOGLUM02G35360.160.853442.7644
AT3G17740arabidopsis_thalianaAT3G17740.164.83946.6493zea_maysZm00001eb256430_P00364.670146.5278
AT3G17740arabidopsis_thalianaAT3G17740.168.842553.2637sesamum_indicumSIN_1020215.t68.544253.0329
AT3G17740arabidopsis_thalianaAT3G17740.160.574442.5587lolium_perennecds.KYUSt_chr6.724763.100644.3336
AT3G17740arabidopsis_thalianaAT3G17740.150.565732.55chara_brauniiGBG7003433.314221.445
AT3G17740arabidopsis_thalianaAT3G17740.189.382184.4212arabis_alpinaKFK3910389.772784.7902
AT3G17740arabidopsis_thalianaAT3G17740.18.0944.78677ciona_savignyiENSCSAVP0000001024052.840931.25
AT3G17740arabidopsis_thalianaAT3G17740.111.22726.09225ciona_savignyiENSCSAVP000000102304323.3333
AT3G17740arabidopsis_thalianaAT3G17740.189.29582.8547brassica_junceacds.BjuA05g27690S89.921183.4356
AT3G17740arabidopsis_thalianaAT3G17740.162.924343.9513oryza_brachyanthaOB02G41060.161.847743.1993
AT3G17740arabidopsis_thalianaAT3G17740.169.538754.4822glycine_maxKRH3898068.407553.5959
AT3G17740arabidopsis_thalianaAT3G17740.169.277654.7433glycine_maxKRH0950767.918153.6689
AT3G17740arabidopsis_thalianaAT3G17740.156.83244.3864corymbia_citriodoracds-KAF8014577.163.336649.4665
AT3G17740arabidopsis_thalianaAT3G17740.163.620545.4308aegilops_tauschiiAET6Gv20798100.1461.428643.8655
AT3G17740arabidopsis_thalianaAT3G17740.163.620545.3438triticum_urartuTuG1812G0500001826.01.T0163.731545.4228
AT3G17740arabidopsis_thalianaAT3G17740.157.615339.8607oryza_longistaminataKN540526.1_FGP00661.4142.4861
AT3G17740arabidopsis_thalianaAT3G17740.167.4553.0896fraxinus_excelsiorFRAEX38873_v2_000156780.2.cds66.466652.3156
AT3G17740arabidopsis_thalianaAT3G17740.163.272445.1697avena_sativa_sangAVESA.00010b.r2.6DG1158290.6.CDS62.780744.8187
AT3G17740arabidopsis_thalianaAT3G17740.163.185444.8216avena_sativa_sangAVESA.00010b.r2.6CG1133890.1.CDS61.945443.942
AT3G17740arabidopsis_thalianaAT3G17740.163.446545.0827avena_sativa_sangAVESA.00010b.r2.6AG1041950.1.CDS62.953444.7323
AT3G17740arabidopsis_thalianaAT3G17740.155.526541.6014musa_acuminataMa10_p01150.167.656450.6893
AT3G17740arabidopsis_thalianaAT3G17740.163.794645.866hordeum_vulgareHORVU.MOREX.r3.6HG0618490.163.463245.6277
AT3G17740arabidopsis_thalianaAT3G17740.163.359445.4308triticum_turgidumTRITD6Bv1G190060.360.818743.609
AT3G17740arabidopsis_thalianaAT3G17740.163.620545.4308triticum_turgidumTRITD6Av1G196470.562.107144.35
AT3G17740arabidopsis_thalianaAT3G17740.164.142745.5178panicum_halliiPUZ7786763.864845.3206
AT3G17740arabidopsis_thalianaAT3G17740.164.664945.0827echinochloa_crusgalliscaffold174.245.cds63.996644.6167
AT3G17740arabidopsis_thalianaAT3G17740.164.490945.2567echinochloa_crusgalliscaffold118.383.cds63.989644.905
AT3G17740arabidopsis_thalianaAT3G17740.163.620544.4735echinochloa_crusgalliscaffold223.100.cds63.126144.1278
AT3G17740arabidopsis_thalianaAT3G17740.169.538754.8303actinidia_chinensisPSS0803167.426253.1646
AT3G17740arabidopsis_thalianaAT3G17740.169.103654.7433citrus_clementinaESR5460870.017655.4674
AT3G17740arabidopsis_thalianaAT3G17740.160.487442.9939oryza_indicaBGIOSGA009125-PA61.668143.8332
AT3G17740arabidopsis_thalianaAT3G17740.151.871232.463selaginella_moellendorffiiEFJ3122955.287634.6011
AT3G17740arabidopsis_thalianaAT3G17740.151.784232.55selaginella_moellendorffiiEFJ1712154.437334.2178
AT3G17740arabidopsis_thalianaAT3G17740.162.315144.2124oryza_sativaOs02t0772500-0161.51243.6426
AT3G17740arabidopsis_thalianaAT3G17740.140.55724.456homo_sapiensENSP0000034633540.034424.1409
AT3G17740arabidopsis_thalianaAT3G17740.163.707645.4308triticum_aestivumTraesCS6A02G324400.163.818745.51
AT3G17740arabidopsis_thalianaAT3G17740.163.446545.4308triticum_aestivumTraesCS6B02G354800.162.844845
AT3G17740arabidopsis_thalianaAT3G17740.163.533545.4308triticum_aestivumTraesCS6D02G304200.163.644345.51
AT3G17740arabidopsis_thalianaAT3G17740.156.65839.8607oryza_rufipogonORUFI02G35740.160.389642.4861
AT3G17740arabidopsis_thalianaAT3G17740.163.359445.3438secale_cerealeSECCE6Rv1G0411540.163.249345.265
AT3G17740arabidopsis_thalianaAT3G17740.171.105355.6136gossypium_raimondiiKJB3025670.613755.229
AT3G17740arabidopsis_thalianaAT3G17740.166.492650.3916helianthus_annuusmRNA:HanXRQr2_Chr14g062569166.261950.2168
AT3G17740arabidopsis_thalianaAT3G17740.157.354239.6867oryza_punctataOPUNC02G31590.260.018241.5301
AT3G17740arabidopsis_thalianaAT3G17740.164.75246.2141eragrostis_tefEt_1A_006675.CDS64.248745.8549
AT3G17740arabidopsis_thalianaAT3G17740.164.490945.953eragrostis_tefEt_1B_011507.CDS63.989645.5959
AT3G17740arabidopsis_thalianaAT3G17740.170.583154.2211medicago_truncatulaAES8689070.034553.7997
AT3G17740arabidopsis_thalianaAT3G17740.163.968744.9956saccharum_spontaneumSspon.04G0024070-1B-mRNA-1:cds64.643845.4705
AT3G17740arabidopsis_thalianaAT3G17740.165.535246.6493sorghum_bicolorEES0587565.535246.6493
AT3G17740arabidopsis_thalianaAT3G17740.163.446545.5178triticum_dicoccoidesTRIDC6BG056900.1963.336245.4387
AT3G17740arabidopsis_thalianaAT3G17740.159.704142.9939triticum_dicoccoidesTRIDC6AG048690.166.601947.9612
AT3G17740arabidopsis_thalianaAT3G17740.167.972252.2193coffea_canephoraCDO9862666.981151.458
AT3G17740arabidopsis_thalianaAT3G17740.168.320354.9173manihot_esculentaOAY4645367.730854.4435
AT3G17740arabidopsis_thalianaAT3G17740.166.753750.3916kalanchoe_fedtschenkoiKaladp0065s0038.1.v1.166.579950.2604
AT3G17740arabidopsis_thalianaAT3G17740.169.277653.0896trifolium_pratenseTp57577_TGAC_v2_mRNA2997568.267652.3156
AT3G17740arabidopsis_thalianaAT3G17740.189.382182.8547brassica_rapa_ro18A05p041820.1_BraROA.190.008883.4356
AT3G17740arabidopsis_thalianaAT3G17740.167.62454.3081eucalyptus_grandisKCW5783965.959352.9711
AT3G17740arabidopsis_thalianaAT3G17740.165.013148.3029dioscorea_rotundataDRNTG_05898.164.787548.1353
AT3G17740arabidopsis_thalianaAT3G17740.170.583155.6136prunus_persicaONI0946469.793554.9914
AT3G17740arabidopsis_thalianaAT3G17740.163.446545.0827avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0001764.361.832143.9355
AT3G17740arabidopsis_thalianaAT3G17740.163.272445.1697avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0001450.161.662444.0204
AT3G17740arabidopsis_thalianaAT3G17740.163.272444.8216avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0000773.161.092443.2773
AT3G17740arabidopsis_thalianaAT3G17740.152.219339.5126chenopodium_quinoaAUR62034018-RA:cds63.157947.7895
AT3G17740arabidopsis_thalianaAT3G17740.162.750244.9086digitaria_exilisDexi1B01G0027640.1:cds62.914545.0262
AT3G17740arabidopsis_thalianaAT3G17740.155.265438.5553digitaria_exilisDexi1A01G0027890.1:cds62.561643.6453
AT3G17740arabidopsis_thalianaAT3G17740.150.739835.9443oryza_barthiiOBART02G34220.164.994446.0424
AT3G17740arabidopsis_thalianaAT3G17740.189.469183.0287brassica_oleraceaBo5g122690.190.413483.905
AT3G17740arabidopsis_thalianaAT3G17740.170.40955.2654prunus_dulcisVVA1959269.621354.6472
AT3G17740arabidopsis_thalianaAT3G17740.166.753753.4378corylus_avellanaCav06g16450.t155.021544.0459
AT3G17740arabidopsis_thalianaAT3G17740.158.311640.9051leersia_perrieriLPERR02G28120.162.152143.5993
AT3G17740arabidopsis_thalianaAT3G17740.168.146252.9156olea_europaeaOE9A048363C267.210352.1888
AT3G17740arabidopsis_thalianaAT3G17740.167.4552.7415pistacia_veracds-EVM0030231.169.819854.5946
AT3G17740arabidopsis_thalianaAT3G17740.127.937313.1419drosophila_melanogasterFBpp007381832.62215.3455
AT3G17740arabidopsis_thalianaAT3G17740.185.117578.9382brassica_napusCDX9215588.909182.4545
AT3G17740arabidopsis_thalianaAT3G17740.186.074879.8085brassica_napusCDX9583088.699682.2421
AT3G17740arabidopsis_thalianaAT3G17740.136.727628.4595corchorus_capsularisOMO8664561.876847.9472
AT3G17740arabidopsis_thalianaAT3G17740.162.576244.2124oryza_meridionalisOMERI02G32510.361.45343.4188
AT3G17740arabidopsis_thalianaAT3G17740.191.731987.4674camelina_sativaCsa15g023990.191.176586.9377
AT3G17740arabidopsis_thalianaAT3G17740.161.531859.356camelina_sativaCsa01g020440.193.766690.4509
AT3G17740arabidopsis_thalianaAT3G17740.170.32255.5265malus_domestica_goldenmRNA:MD14G021140069.178154.6233
AT3G17740arabidopsis_thalianaAT3G17740.168.842553.5248daucus_carotaKZN0145268.842553.5248
AT3G17740arabidopsis_thalianaAT3G17740.170.23555.2654rosa_chinensisPRQ1582769.21154.4597
AT3G17740arabidopsis_thalianaAT3G17740.120.713715.8399juglans_regiacds.Jr06_16710_p163.636448.6631
AT3G17740arabidopsis_thalianaAT3G17740.170.931257.0931juglans_regiacds.Jr06_16700_p170.077456.4058
AT3G17740arabidopsis_thalianaAT3G17740.115.056612.0975juglans_regiacds.Jr06_16720_p175.877260.9649
AT3G17740arabidopsis_thalianaAT3G17740.168.668452.8285vigna_angularisKOM5454068.252652.5087
AT3G17740arabidopsis_thalianaAT3G17740.164.142745.953setaria_italicaKQL3171964.08745.913
AT3G17740arabidopsis_thalianaAT3G17740.151.34934.3777physcomitrium_patensPp3c9_1610V3.146.021830.8112
AT3G17740arabidopsis_thalianaAT3G17740.151.26234.2037physcomitrium_patensPp3c9_1614V3.344.419329.638
AT3G17740arabidopsis_thalianaAT3G17740.171.279455.2654vitis_viniferaVitvi17g01124_P00170.360854.5533

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003674enables molecular_function1NDArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0006396involved_in RNA processing1IEAArabidopsis_thaliana(3702)Process

Expression