Description

Ensembl ID AT3G17712 Gene ID Accession -
Symbol AT3G17712 Alias - Full Name NA
Status Confidence Length 3461 bases Strand Plus strand
Position 3 : 6056870 - 6060330 RNA binding domain NRDE-2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G17712 NRDE-2 PF08424 3.5e-88 1
AT3G17712 NRDE-2 PF08424 1.5e-73 2
AT3G17712 NRDE-2 PF08424 1.5e-73 3
AT3G17712 NRDE-2 PF08424 1.7e-73 4
AT3G17712 NRDE-2 PF08424 1.7e-73 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT3G17712-201 AT3G17712 2653 856aa AT3G17712

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G17712arabidopsis_thalianaAT3G17740.169.016567.7981arabidopsis_thalianaAT3G17712.292.640291.0047

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G17712arabidopsis_thalianaAT3G17712.237.383222.6636chlamydomonas_reinhardtiiPNW7421117.977510.8989
AT3G17712arabidopsis_thalianaAT3G17712.238.434625marchantia_polymorphaPTQ2814333.605721.859
AT3G17712arabidopsis_thalianaAT3G17712.257.126241.8224papaver_somniferumRZC7021442.932431.4311
AT3G17712arabidopsis_thalianaAT3G17712.263.200948.3645ficus_caricaFCD_00031430-RA:cds46.199835.3544
AT3G17712arabidopsis_thalianaAT3G17712.264.252349.0654theobroma_cacaoEOY2154746.888335.8056
AT3G17712arabidopsis_thalianaAT3G17712.258.52843.4579beta_vulgarisKMT0371643.414232.2357
AT3G17712arabidopsis_thalianaAT3G17712.261.799146.028cucumis_meloMELO3C002158.2.147.529235.3998
AT3G17712arabidopsis_thalianaAT3G17712.262.032746.3785cucumis_sativusKGN6420145.618634.1065
AT3G17712arabidopsis_thalianaAT3G17712.262.032747.0794populus_trichocarpaPotri.015G033300.2.v4.144.810134.0084
AT3G17712arabidopsis_thalianaAT3G17712.262.383246.028solanum_lycopersicumSolyc03g098160.3.145.254233.3898
AT3G17712arabidopsis_thalianaAT3G17712.228.97211.4486caenorhabditis_elegansT01E8.5.119.52767.71654
AT3G17712arabidopsis_thalianaAT3G17712.261.331843.8084lactuca_sativacds-PLY64842.145.533432.5238
AT3G17712arabidopsis_thalianaAT3G17712.225.233615.4206ostreococcus_lucimarinusABO9412024.080314.7157
AT3G17712arabidopsis_thalianaAT3G17712.258.52840.771eragrostis_curvulaTVU2870143.078230.0086
AT3G17712arabidopsis_thalianaAT3G17712.258.411240.6542eragrostis_curvulaTVU2872142.992329.9226
AT3G17712arabidopsis_thalianaAT3G17712.262.266446.4953citrullus_lanatusCla97C01G013940.145.790434.1924
AT3G17712arabidopsis_thalianaAT3G17712.260.163645.4439vigna_radiataVradi01g05640.147.553135.9187
AT3G17712arabidopsis_thalianaAT3G17712.262.032746.3785vigna_unguiculataVigun04g038100.2.v1.245.657834.1359
AT3G17712arabidopsis_thalianaAT3G17712.262.733647.1963prunus_aviumPav_sc0000103.1_g1330.1.mk:mrna43.980333.0876
AT3G17712arabidopsis_thalianaAT3G17712.262.547.1963phaseolus_vulgarisESW2461245.962234.7079
AT3G17712arabidopsis_thalianaAT3G17712.256.892539.486asparagus_officinalisONK6707842.644529.5972
AT3G17712arabidopsis_thalianaAT3G17712.261.799145.0935pisum_sativumPsat1g124600.1.cds45.446733.1615
AT3G17712arabidopsis_thalianaAT3G17712.257.009339.486brachypodium_distachyonKQK0169042.214529.2388
AT3G17712arabidopsis_thalianaAT3G17712.213.55146.7757quercus_subercds-POF24454.123.673511.8367
AT3G17712arabidopsis_thalianaAT3G17712.258.411240.3037ananas_comosusAco002632.1.mrna141.981528.9673
AT3G17712arabidopsis_thalianaAT3G17712.287.850583.4112arabidopsis_lyratafgenesh2_kg.3__1956__AT3G17740.165.221261.9254
AT3G17712arabidopsis_thalianaAT3G17712.263.901949.7664quercus_lobataQL10p033145:mrna33.578926.151
AT3G17712arabidopsis_thalianaAT3G17712.261.098144.9766capsicum_annuumPHT8782143.839132.2716
AT3G17712arabidopsis_thalianaAT3G17712.200lupinus_angustifoliusOIW2150300
AT3G17712arabidopsis_thalianaAT3G17712.282.827175.3505eutrema_salsugineumESQ4815062.084156.4799
AT3G17712arabidopsis_thalianaAT3G17712.288.200983.6449arabidopsis_hallerig16129.t165.481462.0989
AT3G17712arabidopsis_thalianaAT3G17712.261.799146.1449cajanus_cajanC.cajan_26163.t45.09833.6743
AT3G17712arabidopsis_thalianaAT3G17712.257.827141.3551setaria_viridisTKW4182242.894330.6759
AT3G17712arabidopsis_thalianaAT3G17712.256.658940.1869oryza_nivaraONIVA02G36270.242.100729.8611
AT3G17712arabidopsis_thalianaAT3G17712.22.803740.934579ipomoea_trilobaitb06g09710.t17.207212.4024
AT3G17712arabidopsis_thalianaAT3G17712.216.121511.6822ipomoea_trilobaitb06g09690.t164.18646.5116
AT3G17712arabidopsis_thalianaAT3G17712.211.44867.94393ipomoea_trilobaitb01g11290.t125.454517.6623
AT3G17712arabidopsis_thalianaAT3G17712.234.112126.5187ipomoea_trilobaitb06g09700.t167.126452.1839
AT3G17712arabidopsis_thalianaAT3G17712.256.658940.1869oryza_glumipatulaOGLUM02G35360.144.990731.9109
AT3G17712arabidopsis_thalianaAT3G17712.259.22941.8224zea_maysZm00001eb256430_P00344.010431.0764
AT3G17712arabidopsis_thalianaAT3G17712.260.864545.5607sesamum_indicumSIN_1020215.t45.147333.7955
AT3G17712arabidopsis_thalianaAT3G17712.258.761741.2383lolium_perennecds.KYUSt_chr6.724745.602932.0036
AT3G17712arabidopsis_thalianaAT3G17712.244.976627.2196chara_brauniiGBG7003422.075713.3601
AT3G17712arabidopsis_thalianaAT3G17712.281.191674.2991arabis_alpinaKFK3910360.751755.5944
AT3G17712arabidopsis_thalianaAT3G17712.23.855142.1028ciona_savignyiENSCSAVP0000001024018.7510.2273
AT3G17712arabidopsis_thalianaAT3G17712.213.08417.47664ciona_savignyiENSCSAVP0000001023037.333321.3333
AT3G17712arabidopsis_thalianaAT3G17712.280.607572.3131brassica_junceacds.BjuA05g27690S60.473354.2507
AT3G17712arabidopsis_thalianaAT3G17712.256.425239.486oryza_brachyanthaOB02G41060.141.317428.9136
AT3G17712arabidopsis_thalianaAT3G17712.262.266447.5467glycine_maxKRH3898045.633634.8459
AT3G17712arabidopsis_thalianaAT3G17712.261.799147.3131glycine_maxKRH0950745.136534.5563
AT3G17712arabidopsis_thalianaAT3G17712.260.163645.9112corymbia_citriodoracds-KAF8014577.149.951538.1183
AT3G17712arabidopsis_thalianaAT3G17712.259.112141.7056aegilops_tauschiiAET6Gv20798100.1442.52130
AT3G17712arabidopsis_thalianaAT3G17712.258.411241.1215triticum_urartuTuG1812G0500001826.01.T0143.59230.6888
AT3G17712arabidopsis_thalianaAT3G17712.257.126239.9533oryza_longistaminataKN540526.1_FGP00645.361831.7254
AT3G17712arabidopsis_thalianaAT3G17712.260.046746.1449fraxinus_excelsiorFRAEX38873_v2_000156780.2.cds44.082333.8765
AT3G17712arabidopsis_thalianaAT3G17712.258.177641.1215avena_sativa_sangAVESA.00010b.r2.6DG1158290.6.CDS43.005230.3972
AT3G17712arabidopsis_thalianaAT3G17712.257.943940.5374avena_sativa_sangAVESA.00010b.r2.6CG1133890.1.CDS42.320829.6075
AT3G17712arabidopsis_thalianaAT3G17712.258.060740.771avena_sativa_sangAVESA.00010b.r2.6AG1041950.1.CDS42.918830.1382
AT3G17712arabidopsis_thalianaAT3G17712.249.299136.0981musa_acuminataMa10_p01150.144.750832.7678
AT3G17712arabidopsis_thalianaAT3G17712.258.294441.8224hordeum_vulgareHORVU.MOREX.r3.6HG0618490.143.203530.9957
AT3G17712arabidopsis_thalianaAT3G17712.258.761741.3551triticum_turgidumTRITD6Bv1G190060.342.021729.5739
AT3G17712arabidopsis_thalianaAT3G17712.259.22941.472triticum_turgidumTRITD6Av1G196470.543.075630.1614
AT3G17712arabidopsis_thalianaAT3G17712.258.294440.8879panicum_halliiPUZ7786743.240930.3293
AT3G17712arabidopsis_thalianaAT3G17712.258.644940.5374echinochloa_crusgalliscaffold174.245.cds43.238629.888
AT3G17712arabidopsis_thalianaAT3G17712.258.52840.8879echinochloa_crusgalliscaffold118.383.cds43.264230.2245
AT3G17712arabidopsis_thalianaAT3G17712.258.060740.4206echinochloa_crusgalliscaffold223.100.cds42.918829.8791
AT3G17712arabidopsis_thalianaAT3G17712.261.331847.7804actinidia_chinensisPSS0803144.303834.5148
AT3G17712arabidopsis_thalianaAT3G17712.262.032747.5467citrus_clementinaESR5460846.825435.8907
AT3G17712arabidopsis_thalianaAT3G17712.253.738338.2009oryza_indicaBGIOSGA009125-PA40.816329.0151
AT3G17712arabidopsis_thalianaAT3G17712.245.560728.0374selaginella_moellendorffiiEFJ3122936.178122.2635
AT3G17712arabidopsis_thalianaAT3G17712.245.677628.0374selaginella_moellendorffiiEFJ1712135.773121.9579
AT3G17712arabidopsis_thalianaAT3G17712.256.191639.9533oryza_sativaOs02t0772500-0141.32329.3814
AT3G17712arabidopsis_thalianaAT3G17712.234.112121.1449homo_sapiensENSP0000034633525.085915.5498
AT3G17712arabidopsis_thalianaAT3G17712.258.52841.2383triticum_aestivumTraesCS6A02G324400.143.679230.7759
AT3G17712arabidopsis_thalianaAT3G17712.258.060741.1215triticum_aestivumTraesCS6B02G354800.142.844830.3448
AT3G17712arabidopsis_thalianaAT3G17712.258.294441.2383triticum_aestivumTraesCS6D02G304200.143.504830.7759
AT3G17712arabidopsis_thalianaAT3G17712.256.308440.0701oryza_rufipogonORUFI02G35740.144.712431.8182
AT3G17712arabidopsis_thalianaAT3G17712.258.177641.1215secale_cerealeSECCE6Rv1G0411540.143.266730.5821
AT3G17712arabidopsis_thalianaAT3G17712.264.135548.5981gossypium_raimondiiKJB3025647.450335.9551
AT3G17712arabidopsis_thalianaAT3G17712.259.813143.4579helianthus_annuusmRNA:HanXRQr2_Chr14g062569144.405932.2637
AT3G17712arabidopsis_thalianaAT3G17712.256.658939.7196oryza_punctataOPUNC02G31590.244.171230.9654
AT3G17712arabidopsis_thalianaAT3G17712.258.878541.7056eragrostis_tefEt_1A_006675.CDS43.523330.829
AT3G17712arabidopsis_thalianaAT3G17712.258.52841.472eragrostis_tefEt_1B_011507.CDS43.264230.6563
AT3G17712arabidopsis_thalianaAT3G17712.262.850546.6121medicago_truncatulaAES8689046.459434.456
AT3G17712arabidopsis_thalianaAT3G17712.257.476639.486saccharum_spontaneumSspon.04G0024070-1B-mRNA-1:cds43.271829.7274
AT3G17712arabidopsis_thalianaAT3G17712.259.462641.5888sorghum_bicolorEES0587544.299430.9835
AT3G17712arabidopsis_thalianaAT3G17712.258.060741.1215triticum_dicoccoidesTRIDC6BG056900.1943.179830.5821
AT3G17712arabidopsis_thalianaAT3G17712.253.154237.9673triticum_dicoccoidesTRIDC6AG048690.144.174831.5534
AT3G17712arabidopsis_thalianaAT3G17712.260.51445.7944coffea_canephoraCDO9862644.425433.6192
AT3G17712arabidopsis_thalianaAT3G17712.260.981347.5467manihot_esculentaOAY4645345.038835.1165
AT3G17712arabidopsis_thalianaAT3G17712.260.397243.9252kalanchoe_fedtschenkoiKaladp0065s0038.1.v1.144.878532.6389
AT3G17712arabidopsis_thalianaAT3G17712.262.149545.9112trifolium_pratenseTp57577_TGAC_v2_mRNA2997545.626133.705
AT3G17712arabidopsis_thalianaAT3G17712.280.724372.3131brassica_rapa_ro18A05p041820.1_BraROA.160.560954.2507
AT3G17712arabidopsis_thalianaAT3G17712.260.630847.3131eucalyptus_grandisKCW5783944.057734.3803
AT3G17712arabidopsis_thalianaAT3G17712.258.177642.9907dioscorea_rotundataDRNTG_05898.143.191731.9167
AT3G17712arabidopsis_thalianaAT3G17712.262.967347.6636prunus_persicaONI0946446.385535.1119
AT3G17712arabidopsis_thalianaAT3G17712.258.411240.8879avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0001764.342.408829.6862
AT3G17712arabidopsis_thalianaAT3G17712.258.52841.2383avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0001450.142.493629.9406
AT3G17712arabidopsis_thalianaAT3G17712.258.294440.6542avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0000773.141.932829.2437
AT3G17712arabidopsis_thalianaAT3G17712.257.009342.6402chenopodium_quinoaAUR62034018-RA:cds51.368438.4211
AT3G17712arabidopsis_thalianaAT3G17712.258.060740.8879digitaria_exilisDexi1B01G0027640.1:cds43.368230.541
AT3G17712arabidopsis_thalianaAT3G17712.247.663633.1776digitaria_exilisDexi1A01G0027890.1:cds40.19727.9803
AT3G17712arabidopsis_thalianaAT3G17712.248.130834.4626oryza_barthiiOBART02G34220.145.930932.8874
AT3G17712arabidopsis_thalianaAT3G17712.280.841171.9626brassica_oleraceaBo5g122690.160.861954.1777
AT3G17712arabidopsis_thalianaAT3G17712.262.733647.3131prunus_dulcisVVA1959246.213434.8537
AT3G17712arabidopsis_thalianaAT3G17712.261.448647.7804corylus_avellanaCav06g16450.t137.733129.34
AT3G17712arabidopsis_thalianaAT3G17712.253.037436.7991leersia_perrieriLPERR02G28120.142.11529.2208
AT3G17712arabidopsis_thalianaAT3G17712.260.630846.028olea_europaeaOE9A048363C244.549433.8197
AT3G17712arabidopsis_thalianaAT3G17712.263.200949.2991pistacia_veracds-EVM0030231.148.738738.018
AT3G17712arabidopsis_thalianaAT3G17712.223.247710.3972drosophila_melanogasterFBpp007381820.22369.04472
AT3G17712arabidopsis_thalianaAT3G17712.278.037470.0935brassica_napusCDX9215560.727354.5455
AT3G17712arabidopsis_thalianaAT3G17712.279.789771.1449brassica_napusCDX9583061.255654.6188
AT3G17712arabidopsis_thalianaAT3G17712.246.02835.3972corchorus_capsularisOMO8664557.771344.4282
AT3G17712arabidopsis_thalianaAT3G17712.256.425240.0701oryza_meridionalisOMERI02G32510.341.282129.3162
AT3G17712arabidopsis_thalianaAT3G17712.284.22978.5047camelina_sativaCsa15g023990.162.370258.1315
AT3G17712arabidopsis_thalianaAT3G17712.246.612143.2243camelina_sativaCsa01g020440.152.917849.0716
AT3G17712arabidopsis_thalianaAT3G17712.262.547.3131malus_domestica_goldenmRNA:MD14G021140045.804834.6747
AT3G17712arabidopsis_thalianaAT3G17712.260.864546.4953daucus_carotaKZN0145245.343834.6388
AT3G17712arabidopsis_thalianaAT3G17712.262.149547.1963rosa_chinensisPRQ1582745.626134.6484
AT3G17712arabidopsis_thalianaAT3G17712.223.71518.2243juglans_regiacds.Jr06_16710_p154.278141.7112
AT3G17712arabidopsis_thalianaAT3G17712.262.967350.3505juglans_regiacds.Jr06_16700_p146.345737.0593
AT3G17712arabidopsis_thalianaAT3G17712.217.75714.2523juglans_regiacds.Jr06_16720_p166.666753.5088
AT3G17712arabidopsis_thalianaAT3G17712.261.448646.1449vigna_angularisKOM5454045.501734.1696
AT3G17712arabidopsis_thalianaAT3G17712.257.943941.3551setaria_italicaKQL3171943.130430.7826
AT3G17712arabidopsis_thalianaAT3G17712.245.327128.972physcomitrium_patensPp3c9_1610V3.130.265219.3448
AT3G17712arabidopsis_thalianaAT3G17712.245.327128.972physcomitrium_patensPp3c9_1614V3.329.260918.7029
AT3G17712arabidopsis_thalianaAT3G17712.263.668247.8972vitis_viniferaVitvi17g01124_P00146.821335.2234

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003674enables molecular_function1NDArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component

Expression