Description

Ensembl ID AT3G16565 Gene ID 820906 Accession -
Symbol AT3G16565 Alias - Full Name threonyl and alanyl tRNA synthetase second additional domain-containing protein
Status Confidence Length 3071 bases Strand Minus strand
Position 3 : 5639704 - 5642774 RNA binding domain tRNA-synt_2c , tRNA_SAD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G16565 tRNA_SAD PF07973 2.5e-05 1
AT3G16565 tRNA_SAD PF07973 5.5e-05 2
AT3G16565 tRNA_SAD PF07973 5.5e-05 3
AT3G16565 tRNA-synt_2c PF01411 7.6e-09 4
AT3G16565 tRNA-synt_2c PF01411 1e-08 5
AT3G16565 tRNA-synt_2c PF01411 1.1e-08 6
AT3G16565 tRNA-synt_2c PF01411 1.1e-08 7
AT3G16565 tRNA-synt_2c PF01411 1.1e-08 8
AT3G16565 tRNA-synt_2c PF01411 1.4e-08 9

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT3G16565-201 AT3G16565 1410 289aa AT3G16565

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G16565arabidopsis_thalianaAT1G50200.211.96836.92384arabidopsis_thalianaAT3G16565.341.868524.2215
AT3G16565arabidopsis_thalianaAT5G22800.210.96716.18146arabidopsis_thalianaAT3G16565.338.062321.4533

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G16565arabidopsis_thalianaAT3G16565.331.141918.3391chlamydomonas_reinhardtiiPNW7333917.013210.0189
AT3G16565arabidopsis_thalianaAT3G16565.365.743956.0554papaver_somniferumRZC4728855.555647.3684
AT3G16565arabidopsis_thalianaAT3G16565.373.010465.0519ficus_caricaFCD_00012699-RA:cds49.299143.9252
AT3G16565arabidopsis_thalianaAT3G16565.372.318361.5917theobroma_cacaoEOY0650381.32369.2607
AT3G16565arabidopsis_thalianaAT3G16565.366.43651.9031beta_vulgarisKMS9546274.418658.1395
AT3G16565arabidopsis_thalianaAT3G16565.368.512156.0554populus_trichocarpaPotri.010G024900.5.v4.180.487865.8537
AT3G16565arabidopsis_thalianaAT3G16565.371.280361.5917lactuca_sativacds-PLY94740.179.84568.9922
AT3G16565arabidopsis_thalianaAT3G16565.347.750933.564ostreococcus_lucimarinusABO9920851.301136.0595
AT3G16565arabidopsis_thalianaAT3G16565.366.43653.2872vigna_radiataVradi07g25280.179.668163.9004
AT3G16565arabidopsis_thalianaAT3G16565.367.820152.5952amborella_trichopodaERN0217564.052349.6732
AT3G16565arabidopsis_thalianaAT3G16565.369.204255.7093vigna_unguiculataVigun03g422700.1.v1.277.519462.4031
AT3G16565arabidopsis_thalianaAT3G16565.369.550259.8616prunus_aviumPav_sc0006257.1_g040.1.mk:mrna77.606266.7954
AT3G16565arabidopsis_thalianaAT3G16565.370.242255.3633phaseolus_vulgarisESW2627373.550757.971
AT3G16565arabidopsis_thalianaAT3G16565.369.204257.7855asparagus_officinalisONK7864977.519464.7287
AT3G16565arabidopsis_thalianaAT3G16565.370.934359.8616pisum_sativumPsat4g025880.1.cds80.078167.5781
AT3G16565arabidopsis_thalianaAT3G16565.365.743950.519brachypodium_distachyonKQK0245172.796955.9387
AT3G16565arabidopsis_thalianaAT3G16565.371.626362.6298quercus_subercds-POE81688.157.550.2778
AT3G16565arabidopsis_thalianaAT3G16565.367.12853.2872ananas_comosusAco021842.1.mrna171.323556.6176
AT3G16565arabidopsis_thalianaAT3G16565.386.159280.2768arabidopsis_lyratafgenesh2_kg.3__1821__AT3G16565.297.265690.625
AT3G16565arabidopsis_thalianaAT3G16565.370.934361.9377quercus_lobataQL06p008815:mrna79.766569.6498
AT3G16565arabidopsis_thalianaAT3G16565.361.245751.2111lupinus_angustifoliusOIW1959474.058661.9247
AT3G16565arabidopsis_thalianaAT3G16565.384.429177.5087eutrema_salsugineumESQ4827995.312587.5
AT3G16565arabidopsis_thalianaAT3G16565.384.775180.2768arabidopsis_hallerig06551.t195.703190.625
AT3G16565arabidopsis_thalianaAT3G16565.368.512155.7093cajanus_cajanC.cajan_04277.t77.343862.8906
AT3G16565arabidopsis_thalianaAT3G16565.367.12850.8651setaria_viridisTKW1314873.484855.6818
AT3G16565arabidopsis_thalianaAT3G16565.364.359950.519oryza_nivaraONIVA01G01500.170.454555.303
AT3G16565arabidopsis_thalianaAT3G16565.370.242257.0934ipomoea_trilobaitb04g10880.t178.988364.2023
AT3G16565arabidopsis_thalianaAT3G16565.364.705950.519oryza_glumipatulaOGLUM01G01450.170.833355.303
AT3G16565arabidopsis_thalianaAT3G16565.365.743951.5571zea_maysZm00001eb334800_P00272.243356.654
AT3G16565arabidopsis_thalianaAT3G16565.363.667852.2491sesamum_indicumSIN_1016230.t76.033162.3967
AT3G16565arabidopsis_thalianaAT3G16565.349.82735.9862lolium_perennecds.KYUSt_chr3.296669.565250.2415
AT3G16565arabidopsis_thalianaAT3G16565.337.024224.2215ciona_savignyiENSCSAVP0000000085626.161417.1149
AT3G16565arabidopsis_thalianaAT3G16565.381.660974.7405brassica_junceacds.BjuA05g28470S83.392276.3251
AT3G16565arabidopsis_thalianaAT3G16565.364.705950.8651oryza_brachyanthaOB01G11340.171.37456.1069
AT3G16565arabidopsis_thalianaAT3G16565.367.820154.3253glycine_maxKRH5085074.809259.9237
AT3G16565arabidopsis_thalianaAT3G16565.360.207646.7128glycine_maxKRH022505038.7931
AT3G16565arabidopsis_thalianaAT3G16565.368.512159.5156corymbia_citriodoracds-KAF8030724.177.952867.7165
AT3G16565arabidopsis_thalianaAT3G16565.363.667849.827aegilops_tauschiiAET3Gv20046500.552.272740.9091
AT3G16565arabidopsis_thalianaAT3G16565.366.0950.8651triticum_urartuTuG1812G0300000268.01.T0175.196957.874
AT3G16565arabidopsis_thalianaAT3G16565.326.989622.8374fraxinus_excelsiorFRAEX38873_v2_000001640.1.cds67.241456.8966
AT3G16565arabidopsis_thalianaAT3G16565.367.820157.4394fraxinus_excelsiorFRAEX38873_v2_000103440.1.cds75.675764.0927
AT3G16565arabidopsis_thalianaAT3G16565.365.397947.4048avena_sativa_sangAVESA.00010b.r2.1CG0118160.1.CDS72.97352.8958
AT3G16565arabidopsis_thalianaAT3G16565.365.051947.7509avena_sativa_sangAVESA.00010b.r2.3AG0409580.1.CDS72.868253.4884
AT3G16565arabidopsis_thalianaAT3G16565.366.0951.9031musa_acuminataMa10_p20070.173.745257.9151
AT3G16565arabidopsis_thalianaAT3G16565.364.705950.519oryza_glaberrimaORGLA01G0012200.170.56655.0943
AT3G16565arabidopsis_thalianaAT3G16565.366.78249.827hordeum_vulgareHORVU.MOREX.r3.3HG0224760.176.892457.3705
AT3G16565arabidopsis_thalianaAT3G16565.366.0951.2111triticum_turgidumTRITD3Av1G001500.274.319157.5875
AT3G16565arabidopsis_thalianaAT3G16565.365.051949.827triticum_turgidumTRITD3Bv1G005540.159.493745.5696
AT3G16565arabidopsis_thalianaAT3G16565.365.397950.519panicum_halliiPUZ5778472.413855.9387
AT3G16565arabidopsis_thalianaAT3G16565.361.937748.0969echinochloa_crusgalliscaffold151.35.cds69.11253.668
AT3G16565arabidopsis_thalianaAT3G16565.356.401442.5606echinochloa_crusgalliscaffold250.122.cds55.821942.1233
AT3G16565arabidopsis_thalianaAT3G16565.366.0950.8651echinochloa_crusgalliscaffold59.424.cds72.900856.1069
AT3G16565arabidopsis_thalianaAT3G16565.371.280361.9377actinidia_chinensisPSR8513280.155669.6498
AT3G16565arabidopsis_thalianaAT3G16565.374.394565.0519citrus_clementinaESR3282683.333372.8682
AT3G16565arabidopsis_thalianaAT3G16565.364.705950.519oryza_indicaBGIOSGA002498-PA70.833355.303
AT3G16565arabidopsis_thalianaAT3G16565.358.131542.5606selaginella_moellendorffiiEFJ0936071.186452.1186
AT3G16565arabidopsis_thalianaAT3G16565.360.207643.9446selaginella_moellendorffiiEFJ3499267.968849.6094
AT3G16565arabidopsis_thalianaAT3G16565.360.207643.5986selaginella_moellendorffiiEFJ0936367.968849.2188
AT3G16565arabidopsis_thalianaAT3G16565.364.705950.519oryza_sativaOs01t0120400-0270.833355.303
AT3G16565arabidopsis_thalianaAT3G16565.338.062320.7612homo_sapiensENSP0000024457111.16756.09137
AT3G16565arabidopsis_thalianaAT3G16565.331.487920.7612homo_sapiensENSP0000040087022.087414.5631
AT3G16565arabidopsis_thalianaAT3G16565.365.743950.519triticum_aestivumTraesCS3B02G020800.174.218857.0312
AT3G16565arabidopsis_thalianaAT3G16565.365.743951.5571triticum_aestivumTraesCS3D02G022200.173.359157.529
AT3G16565arabidopsis_thalianaAT3G16565.365.397950.519triticum_aestivumTraesCS3A02G024100.266.315851.2281
AT3G16565arabidopsis_thalianaAT3G16565.364.705950.519oryza_rufipogonORUFI01G01370.170.833355.303
AT3G16565arabidopsis_thalianaAT3G16565.367.12855.7093gossypium_raimondiiKJB3861073.764361.2167
AT3G16565arabidopsis_thalianaAT3G16565.369.896259.8616helianthus_annuusmRNA:HanXRQr2_Chr03g012317179.841968.3794
AT3G16565arabidopsis_thalianaAT3G16565.364.705950.173oryza_punctataOPUNC01G01130.171.102755.1331
AT3G16565arabidopsis_thalianaAT3G16565.365.743950.173eragrostis_tefEt_3A_026173.CDS68.345352.1583
AT3G16565arabidopsis_thalianaAT3G16565.364.359949.827eragrostis_tefEt_3B_030530.CDS70.454554.5455
AT3G16565arabidopsis_thalianaAT3G16565.370.588259.5156medicago_truncatulaAES9186579.069866.6667
AT3G16565arabidopsis_thalianaAT3G16565.366.0951.2111saccharum_spontaneumSspon.03G0019110-3C-mRNA-1:cds72.900856.4885
AT3G16565arabidopsis_thalianaAT3G16565.365.743951.2111sorghum_bicolorKXG3204672.243356.2738
AT3G16565arabidopsis_thalianaAT3G16565.357.785545.6747triticum_dicoccoidesTRIDC3BG003520.378.773662.2642
AT3G16565arabidopsis_thalianaAT3G16565.361.245747.4048triticum_dicoccoidesTRIDC3AG000740.265.555650.7407
AT3G16565arabidopsis_thalianaAT3G16565.365.051955.3633coffea_canephoraCDO9888077.68666.1157
AT3G16565arabidopsis_thalianaAT3G16565.370.588261.9377manihot_esculentaOAY5598976.404567.0412
AT3G16565arabidopsis_thalianaAT3G16565.367.820157.0934kalanchoe_fedtschenkoiKaladp0076s0286.1.v1.177.470465.2174
AT3G16565arabidopsis_thalianaAT3G16565.368.858156.7474trifolium_pratenseTp57577_TGAC_v2_mRNA326376.83463.3205
AT3G16565arabidopsis_thalianaAT3G16565.381.314973.7024brassica_rapa_ro18A05p042750.1_BraROA.188.345980.0752
AT3G16565arabidopsis_thalianaAT3G16565.365.743956.7474eucalyptus_grandisKCW8447871.969762.1212
AT3G16565arabidopsis_thalianaAT3G16565.367.12855.3633dioscorea_rotundataDRNTG_33869.176.37862.9921
AT3G16565arabidopsis_thalianaAT3G16565.369.550259.5156prunus_persicaONI2830977.606266.4093
AT3G16565arabidopsis_thalianaAT3G16565.365.051947.7509avena_sativa_ot3098cds.AVESA.00001b.r3.3Cg0000196.262.666746
AT3G16565arabidopsis_thalianaAT3G16565.365.743948.7889avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0000279.173.359154.4402
AT3G16565arabidopsis_thalianaAT3G16565.365.397947.7509avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0000253.172.97353.2819
AT3G16565arabidopsis_thalianaAT3G16565.349.82741.8685chenopodium_quinoaAUR62035873-RA:cds72.361860.804
AT3G16565arabidopsis_thalianaAT3G16565.362.283747.4048digitaria_exilisDexi5B01G0009380.1:cds68.965552.4904
AT3G16565arabidopsis_thalianaAT3G16565.362.975847.4048digitaria_exilisDexi5A01G0008930.1:cds64.768748.7544
AT3G16565arabidopsis_thalianaAT3G16565.360.207647.7509oryza_barthiiOBART01G01290.169.655.2
AT3G16565arabidopsis_thalianaAT3G16565.381.660974.7405brassica_oleraceaBo5g124850.192.913485.0394
AT3G16565arabidopsis_thalianaAT3G16565.369.550259.1696prunus_dulcisVVA1679477.606266.0232
AT3G16565arabidopsis_thalianaAT3G16565.368.858158.1315olea_europaeaOE9A105285C176.245264.3678
AT3G16565arabidopsis_thalianaAT3G16565.335.986223.5294saccharomyces_cerevisiaeYNL040W22.80714.9123
AT3G16565arabidopsis_thalianaAT3G16565.372.664464.7059pistacia_veracds-EVM0027757.182.031273.0469
AT3G16565arabidopsis_thalianaAT3G16565.332.52617.9931drosophila_melanogasterFBpp00768719.288545.13834
AT3G16565arabidopsis_thalianaAT3G16565.333.56418.3391drosophila_melanogasterFBpp007054322.247712.156
AT3G16565arabidopsis_thalianaAT3G16565.383.73776.4706brassica_napusCDX9208090.298582.4627
AT3G16565arabidopsis_thalianaAT3G16565.378.200771.6263brassica_napusCDY4310894.166786.25
AT3G16565arabidopsis_thalianaAT3G16565.370.242259.8616corchorus_capsularisOMO7289178.988367.3152
AT3G16565arabidopsis_thalianaAT3G16565.365.397950.173oryza_meridionalisOMERI01G00750.171.590954.9242
AT3G16565arabidopsis_thalianaAT3G16565.365.397950.173oryza_meridionalisOMERI01G00780.171.590954.9242
AT3G16565arabidopsis_thalianaAT3G16565.377.162670.9343camelina_sativaCsa15g021450.181.090974.5455
AT3G16565arabidopsis_thalianaAT3G16565.347.058842.2145camelina_sativaCsa01g019250.186.07677.2152
AT3G16565arabidopsis_thalianaAT3G16565.374.394567.474camelina_sativaCsa19g023420.177.060969.8925
AT3G16565arabidopsis_thalianaAT3G16565.368.858157.7855malus_domestica_goldenmRNA:MD13G014920077.131864.7287
AT3G16565arabidopsis_thalianaAT3G16565.367.820157.7855daucus_carotaKZM8550071.794961.1722
AT3G16565arabidopsis_thalianaAT3G16565.368.858155.7093rosa_chinensisPRQ3917377.431962.6459
AT3G16565arabidopsis_thalianaAT3G16565.369.550255.7093vigna_angularisKOM3351177.307761.9231
AT3G16565arabidopsis_thalianaAT3G16565.353.979240.8304setaria_italicaKQL0416171.559654.1284
AT3G16565arabidopsis_thalianaAT3G16565.360.553646.3668physcomitrium_patensPp3c1_7890V3.259.121645.2703
AT3G16565arabidopsis_thalianaAT3G16565.372.318364.3599vitis_viniferaVitvi05g00315_P00181.640672.6562
AT3G16565arabidopsis_thalianaAT3G16565.346.712842.2145cynara_cardunculusKVH9157561.643855.7078

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003676enables nucleic acid binding1IEAArabidopsis_thaliana(3702)Function
GO:0004813enables alanine-tRNA ligase activity1IEAArabidopsis_thaliana(3702)Function
GO:0005524enables ATP binding1IEAArabidopsis_thaliana(3702)Function
GO:0005737located_in cytoplasm1ISMArabidopsis_thaliana(3702)Component
GO:0006419involved_in alanyl-tRNA aminoacylation1IEAArabidopsis_thaliana(3702)Process
GO:0007165acts_upstream_of_or_within signal transduction1IEAArabidopsis_thaliana(3702)Process
GO:0009414acts_upstream_of_or_within response to water deprivation1IEAArabidopsis_thaliana(3702)Process
GO:0016070acts_upstream_of_or_within RNA metabolic process1IEAArabidopsis_thaliana(3702)Process
GO:0019438acts_upstream_of_or_within aromatic compound biosynthetic process1IEAArabidopsis_thaliana(3702)Process
GO:0019538acts_upstream_of_or_within protein metabolic process1IEAArabidopsis_thaliana(3702)Process
GO:0019748acts_upstream_of_or_within secondary metabolic process1IEAArabidopsis_thaliana(3702)Process
GO:0033993acts_upstream_of_or_within response to lipid1IEAArabidopsis_thaliana(3702)Process
GO:0043412acts_upstream_of_or_within macromolecule modification1IEAArabidopsis_thaliana(3702)Process
GO:0071310acts_upstream_of_or_within cellular response to organic substance1IEAArabidopsis_thaliana(3702)Process
GO:1901362acts_upstream_of_or_within organic cyclic compound biosynthetic process1IEAArabidopsis_thaliana(3702)Process

Expression