Description

Ensembl ID AT3G11870 Gene ID 820360 Accession -
Symbol AT3G11870 Alias - Full Name Endoribonuclease/protein kinase IRE1-like protein
Status Confidence Length 2096 bases Strand Minus strand
Position 3 : 3746998 - 3749093 RNA binding domain Ribonuc_2-5A
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G11870 Ribonuc_2-5A PF06479 6e-29 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT3G11870-201 AT3G11870 1665 554aa AT3G11870

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G11870arabidopsis_thalianaAT2G17520.136.504227.7051arabidopsis_thalianaAT3G11870.155.415242.0578
AT3G11870arabidopsis_thalianaAT5G24360.233.370922.2097arabidopsis_thalianaAT3G11870.153.429635.5596

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G11870arabidopsis_thalianaAT3G11870.139.350222.7437chondrus_crispusCDF4007821.648512.5124
AT3G11870arabidopsis_thalianaAT3G11870.144.765329.0614chlamydomonas_reinhardtiiPNW7989515.529110.0814
AT3G11870arabidopsis_thalianaAT3G11870.149.097532.13marchantia_polymorphaPTQ4286031.156920.3895
AT3G11870arabidopsis_thalianaAT3G11870.144.223829.4224ficus_caricaFCD_00007267-RA:cds50.619833.6777
AT3G11870arabidopsis_thalianaAT3G11870.131.227419.3141ficus_caricaFCD_00007273-RA:cds48.189429.805
AT3G11870arabidopsis_thalianaAT3G11870.128.158815.8845ficus_caricaFCD_00007274-RA:cds38.141821.5159
AT3G11870arabidopsis_thalianaAT3G11870.131.407921.1191ficus_caricaFCD_00006491-RA:cds39.635526.6515
AT3G11870arabidopsis_thalianaAT3G11870.127.978318.0505ficus_caricaFCD_00007265-RA:cds51.839533.4448
AT3G11870arabidopsis_thalianaAT3G11870.146.389929.6029ficus_caricaFCD_00007263-RA:cds41.25226.3242
AT3G11870arabidopsis_thalianaAT3G11870.130.866418.4116ficus_caricaFCD_00035340-RA:cds38.513522.973
AT3G11870arabidopsis_thalianaAT3G11870.134.29623.1047ficus_caricaFCD_00035346-RA:cds53.521136.0563
AT3G11870arabidopsis_thalianaAT3G11870.135.740121.8412ficus_caricaFCD_00035345-RA:cds52.105331.8421
AT3G11870arabidopsis_thalianaAT3G11870.114.44049.38628ficus_caricaFCD_00007271-RA:cds38.83525.2427
AT3G11870arabidopsis_thalianaAT3G11870.123.285215.704ficus_caricaFCD_00007270-RA:cds54.430436.7089
AT3G11870arabidopsis_thalianaAT3G11870.141.155225.8123ficus_caricaFCD_00035338-RA:cds40.933625.6733
AT3G11870arabidopsis_thalianaAT3G11870.141.696827.0758ficus_caricaFCD_00007268-RA:cds46.385530.1205
AT3G11870arabidopsis_thalianaAT3G11870.112.09397.76173beta_vulgarisKMS9354557.758637.069
AT3G11870arabidopsis_thalianaAT3G11870.143.862824.9097caenorhabditis_elegansC41C4.4a.125.129314.2709
AT3G11870arabidopsis_thalianaAT3G11870.124.007216.6065lactuca_sativacds-PLY69377.150.763435.1145
AT3G11870arabidopsis_thalianaAT3G11870.136.101123.6462ostreococcus_lucimarinusABO9438143.763728.6652
AT3G11870arabidopsis_thalianaAT3G11870.145.306931.4079eragrostis_curvulaTVU3936528.522719.7727
AT3G11870arabidopsis_thalianaAT3G11870.123.826714.6209amborella_trichopodaERM9647353.225832.6613
AT3G11870arabidopsis_thalianaAT3G11870.124.368215.8845amborella_trichopodaERM9647054.87835.7724
AT3G11870arabidopsis_thalianaAT3G11870.15033.3935amborella_trichopodaERN1715129.405519.6391
AT3G11870arabidopsis_thalianaAT3G11870.148.014433.935asparagus_officinalisONK7105835.466725.0667
AT3G11870arabidopsis_thalianaAT3G11870.150.541535.9206brachypodium_distachyonKQK1633531.390122.3094
AT3G11870arabidopsis_thalianaAT3G11870.15034.657ananas_comosusAco015782.1.mrna128.645319.8552
AT3G11870arabidopsis_thalianaAT3G11870.178.339367.3285arabidopsis_lyratafgenesh1_pm.C_scaffold_300098378.339367.3285
AT3G11870arabidopsis_thalianaAT3G11870.131.407920.5776arabidopsis_hallerig18373.t151.176533.5294
AT3G11870arabidopsis_thalianaAT3G11870.141.696827.6173arabidopsis_hallerig18372.t147.046831.1609
AT3G11870arabidopsis_thalianaAT3G11870.149.27835.1986setaria_viridisTKW3467429.104520.7889
AT3G11870arabidopsis_thalianaAT3G11870.148.736535.1986oryza_nivaraONIVA07G11900.130.235221.8365
AT3G11870arabidopsis_thalianaAT3G11870.148.91735.3791oryza_glumipatulaOGLUM07G12930.130.245521.875
AT3G11870arabidopsis_thalianaAT3G11870.149.097534.1155zea_maysZm00001eb104810_P00129.98920.8379
AT3G11870arabidopsis_thalianaAT3G11870.149.63934.4765zea_maysZm00001eb320100_P00129.729720.6486
AT3G11870arabidopsis_thalianaAT3G11870.147.292432.852lolium_perennecds.KYUSt_chr2.2594833.850123.5142
AT3G11870arabidopsis_thalianaAT3G11870.145.848427.6173chara_brauniiGBG6713725.476415.346
AT3G11870arabidopsis_thalianaAT3G11870.121.841212.6354ciona_savignyiENSCSAVP0000001854140.468223.4114
AT3G11870arabidopsis_thalianaAT3G11870.143.862831.9495oryza_brachyanthaOB07G19930.139.256928.5945
AT3G11870arabidopsis_thalianaAT3G11870.143.862826.5343cyanidioschyzon_merolaeCMM326CT19.224711.6297
AT3G11870arabidopsis_thalianaAT3G11870.147.472928.8809corymbia_citriodoracds-KAF8035120.128.401717.2786
AT3G11870arabidopsis_thalianaAT3G11870.149.097532.852corymbia_citriodoracds-KAF8011208.130.323320.2899
AT3G11870arabidopsis_thalianaAT3G11870.146.570434.1155corymbia_citriodoracds-KAF8011205.130.60522.4199
AT3G11870arabidopsis_thalianaAT3G11870.113.17697.40072corymbia_citriodoracds-KAF8035129.148.344427.1523
AT3G11870arabidopsis_thalianaAT3G11870.146.028931.769corymbia_citriodoracds-KAF8011211.135.614524.581
AT3G11870arabidopsis_thalianaAT3G11870.142.779827.2563corymbia_citriodoracds-KAF8035119.144.134128.1192
AT3G11870arabidopsis_thalianaAT3G11870.140.974727.0758corymbia_citriodoracds-KAF8035096.143.155928.5171
AT3G11870arabidopsis_thalianaAT3G11870.141.516226.1733corymbia_citriodoracds-KAF8035118.142.830527.0019
AT3G11870arabidopsis_thalianaAT3G11870.138.808727.6173corymbia_citriodoracds-KAF7849481.142.914230.5389
AT3G11870arabidopsis_thalianaAT3G11870.142.238329.4224corymbia_citriodoracds-KAF8035092.145.261131.528
AT3G11870arabidopsis_thalianaAT3G11870.149.458535.7401aegilops_tauschiiAET6Gv20921300.129.1821.0863
AT3G11870arabidopsis_thalianaAT3G11870.149.458535.5596triticum_urartuTuG1812G0600004016.01.T0431.030622.3103
AT3G11870arabidopsis_thalianaAT3G11870.147.833934.8375oryza_longistaminataKN538907.1_FGP00432.317123.5366
AT3G11870arabidopsis_thalianaAT3G11870.144.404332.3105avena_sativa_sangAVESA.00010b.r2.2AG0201530.1.CDS40.394129.3924
AT3G11870arabidopsis_thalianaAT3G11870.149.63935.0181avena_sativa_sangAVESA.00010b.r2.2CG0278940.1.CDS31.038421.8962
AT3G11870arabidopsis_thalianaAT3G11870.144.404331.769avena_sativa_sangAVESA.00010b.r2.2DG0346810.1.CDS33.153623.7197
AT3G11870arabidopsis_thalianaAT3G11870.142.599330.3249musa_acuminataMa03_p30230.153.636438.1818
AT3G11870arabidopsis_thalianaAT3G11870.151.44435.5596musa_acuminataMa03_p30430.128.729819.8589
AT3G11870arabidopsis_thalianaAT3G11870.151.44435.7401musa_acuminataMa09_p22090.229.442120.4545
AT3G11870arabidopsis_thalianaAT3G11870.115.523510.1083musa_acuminataMa03_p30240.323.561615.3425
AT3G11870arabidopsis_thalianaAT3G11870.148.91735.3791oryza_glaberrimaORGLA07G0117300.130.347121.9485
AT3G11870arabidopsis_thalianaAT3G11870.149.097535.5596hordeum_vulgareHORVU.MOREX.r3.6HG0627300.130.87422.361
AT3G11870arabidopsis_thalianaAT3G11870.149.458535.5596triticum_turgidumTRITD6Bv1G213900.231.065822.3356
AT3G11870arabidopsis_thalianaAT3G11870.149.458535.5596triticum_turgidumTRITD6Av1G215350.428.073820.1844
AT3G11870arabidopsis_thalianaAT3G11870.149.819534.8375panicum_halliiPUZ7198529.550320.6638
AT3G11870arabidopsis_thalianaAT3G11870.150.180534.4765echinochloa_crusgalliscaffold27.143.cds29.511720.276
AT3G11870arabidopsis_thalianaAT3G11870.148.736534.1155echinochloa_crusgalliscaffold43.205.cds30.998921.6992
AT3G11870arabidopsis_thalianaAT3G11870.150.36134.657echinochloa_crusgalliscaffold16.773.cds29.649320.4038
AT3G11870arabidopsis_thalianaAT3G11870.148.736535.1986oryza_indicaBGIOSGA025667-PA30.235221.8365
AT3G11870arabidopsis_thalianaAT3G11870.127.436818.9531selaginella_moellendorffiiEFJ1939058.461540.3846
AT3G11870arabidopsis_thalianaAT3G11870.126.173318.231selaginella_moellendorffiiEFJ2115857.312339.9209
AT3G11870arabidopsis_thalianaAT3G11870.148.91735.3791oryza_sativaOs07t0471000-0130.347121.9485
AT3G11870arabidopsis_thalianaAT3G11870.149.63935.3791triticum_aestivumTraesCS6B02G412400.131.179122.2222
AT3G11870arabidopsis_thalianaAT3G11870.149.458535.7401triticum_aestivumTraesCS6D02G358600.130.925522.3476
AT3G11870arabidopsis_thalianaAT3G11870.149.458535.5596triticum_aestivumTraesCS6A02G374700.131.030622.3103
AT3G11870arabidopsis_thalianaAT3G11870.148.91735.3791oryza_rufipogonORUFI07G14030.130.347121.9485
AT3G11870arabidopsis_thalianaAT3G11870.149.458535.3791secale_cerealeSECCE6Rv1G0419750.130.890622.097
AT3G11870arabidopsis_thalianaAT3G11870.148.736535.3791oryza_punctataOPUNC07G12490.130.133921.875
AT3G11870arabidopsis_thalianaAT3G11870.149.63934.657eragrostis_tefEt_5B_043496.CDS25.439417.7613
AT3G11870arabidopsis_thalianaAT3G11870.149.63934.657eragrostis_tefEt_5A_040810.CDS30.286321.1454
AT3G11870arabidopsis_thalianaAT3G11870.149.819534.657saccharum_spontaneumSspon.02G0007840-3C-mRNA-1:cds29.773520.712
AT3G11870arabidopsis_thalianaAT3G11870.15035.0181saccharum_spontaneumSspon.02G0007840-2B-mRNA-1:cds29.784920.8602
AT3G11870arabidopsis_thalianaAT3G11870.149.819535.0181saccharum_spontaneumSspon.02G0007840-1T-mRNA-1:cds29.645520.8378
AT3G11870arabidopsis_thalianaAT3G11870.149.819535.0181saccharum_spontaneumSspon.02G0007840-1A-mRNA-1:cds29.645520.8378
AT3G11870arabidopsis_thalianaAT3G11870.149.63934.8375saccharum_spontaneumSspon.02G0007840-4D-mRNA-1:cds29.761920.8874
AT3G11870arabidopsis_thalianaAT3G11870.149.819534.657sorghum_bicolorEER9719629.902520.8017
AT3G11870arabidopsis_thalianaAT3G11870.149.63935.5596triticum_dicoccoidesTRIDC6BG065420.931.108622.2851
AT3G11870arabidopsis_thalianaAT3G11870.149.458535.5596triticum_dicoccoidesTRIDC6AG055930.233.131823.821
AT3G11870arabidopsis_thalianaAT3G11870.139.530722.2022brassica_rapa_ro18A02p048800.1_BraROA.126.838215.0735
AT3G11870arabidopsis_thalianaAT3G11870.114.07949.02527eucalyptus_grandisKCW8071653.061234.0136
AT3G11870arabidopsis_thalianaAT3G11870.151.985637.7256dioscorea_rotundataDRNTG_26578.130.347722.0232
AT3G11870arabidopsis_thalianaAT3G11870.149.27834.657avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0000279.127.547919.3744
AT3G11870arabidopsis_thalianaAT3G11870.149.63935.0181avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0000885.329.193220.5945
AT3G11870arabidopsis_thalianaAT3G11870.149.27834.8375avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0002855.130.812621.7833
AT3G11870arabidopsis_thalianaAT3G11870.148.91735.3791oryza_barthiiOBART07G13920.130.830522.2981
AT3G11870arabidopsis_thalianaAT3G11870.133.21318.7726brassica_oleraceaBo7g078860.124.797814.0162
AT3G11870arabidopsis_thalianaAT3G11870.142.599324.3682galdieria_sulphurariaEME2805925.708114.7059
AT3G11870arabidopsis_thalianaAT3G11870.148.375535.3791leersia_perrieriLPERR07G11640.129.777821.7778
AT3G11870arabidopsis_thalianaAT3G11870.146.028928.5199saccharomyces_cerevisiaeYHR079C22.8714.1704
AT3G11870arabidopsis_thalianaAT3G11870.140.433224.3682drosophila_melanogasterFBpp011216020.856612.5698
AT3G11870arabidopsis_thalianaAT3G11870.139.169722.2022brassica_napusCDY3626127.784915.749
AT3G11870arabidopsis_thalianaAT3G11870.148.55635.3791oryza_meridionalisOMERI06G02660.129.081121.1892
AT3G11870arabidopsis_thalianaAT3G11870.140.613725.6318camelina_sativaCsa04g004180.127.075817.0878
AT3G11870arabidopsis_thalianaAT3G11870.136.642622.0217camelina_sativaCsa19g003480.138.740523.2824
AT3G11870arabidopsis_thalianaAT3G11870.138.808724.5487camelina_sativaCsa07g013670.138.461524.3292
AT3G11870arabidopsis_thalianaAT3G11870.149.458534.8375nymphaea_colorataNC2G0285290.1:cds25.849118.2075
AT3G11870arabidopsis_thalianaAT3G11870.149.819534.296nymphaea_colorataNC9G0173320.1:cds27.299718.7933
AT3G11870arabidopsis_thalianaAT3G11870.149.097535.1986setaria_italicaKQL2573828.997920.7889
AT3G11870arabidopsis_thalianaAT3G11870.147.833932.491physcomitrium_patensPp3c17_18370V3.328.494619.3548
AT3G11870arabidopsis_thalianaAT3G11870.148.375531.769physcomitrium_patensPp3c14_20430V3.429.004319.0476

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005576located_in extracellular region1ISMArabidopsis_thaliana(3702)Component
GO:0005783located_in endoplasmic reticulum1IDAArabidopsis_thaliana(3702)Component
GO:0006397involved_in mRNA processing1IEAArabidopsis_thaliana(3702)Process
GO:0006468involved_in protein phosphorylation1IEAArabidopsis_thaliana(3702)Process
GO:0016310acts_upstream_of_or_within phosphorylation1ISSArabidopsis_thaliana(3702)Process

Expression