Description

Ensembl ID AT3G02660 Gene ID 821282 Accession -
Symbol EMB2768 Alias - Full Name Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
Status Confidence Length 2253 bases Strand Minus strand
Position 3 : 570134 - 572386 RNA binding domain tRNA-synt_1b , S4
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT3G02660 S4 PF01479 6.1e-08 1
AT3G02660 S4 PF01479 6.1e-08 2
AT3G02660 tRNA-synt_1b PF00579 1.7e-74 3
AT3G02660 tRNA-synt_1b PF00579 1.7e-74 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
EMB2768-202 AT3G02660 1779 511aa AT3G02660

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G02660

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT3G02660arabidopsis_thalianaAT3G02660.263.209446.3796chondrus_crispusCDF3321663.333346.4706
AT3G02660arabidopsis_thalianaAT3G02660.264.774950.6849chlamydomonas_reinhardtiiPNW7437767.276452.6423
AT3G02660arabidopsis_thalianaAT3G02660.271.428656.5558marchantia_polymorphaPTQ2845463.811250.5245
AT3G02660arabidopsis_thalianaAT3G02660.273.972664.5793ficus_caricaFCD_00023538-RA:cds78.7568.75
AT3G02660arabidopsis_thalianaAT3G02660.273.972664.7749ficus_caricaFCD_00031707-RA:cds78.099268.3884
AT3G02660arabidopsis_thalianaAT3G02660.275.538265.1663theobroma_cacaoEOY1355971.217761.4391
AT3G02660arabidopsis_thalianaAT3G02660.277.690865.5577beta_vulgarisKMT0680679.718967.2691
AT3G02660arabidopsis_thalianaAT3G02660.275.733964.1879cucumis_meloMELO3C017627.2.178.49966.5314
AT3G02660arabidopsis_thalianaAT3G02660.276.90865.7534cucumis_sativusKGN5318579.71668.1542
AT3G02660arabidopsis_thalianaAT3G02660.275.538264.3836populus_trichocarpaPotri.014G140400.1.v4.176.892465.5378
AT3G02660arabidopsis_thalianaAT3G02660.274.755463.7965solanum_lycopersicumSolyc07g008530.1.1.173.320562.572
AT3G02660arabidopsis_thalianaAT3G02660.244.618427.593caenorhabditis_elegansK08F11.4a.151.006731.5436
AT3G02660arabidopsis_thalianaAT3G02660.274.755463.2094lactuca_sativacds-PLY94689.176.861264.9899
AT3G02660arabidopsis_thalianaAT3G02660.262.426647.7495ostreococcus_lucimarinusABO9474165.909150.4132
AT3G02660arabidopsis_thalianaAT3G02660.276.712365.7534citrullus_lanatusCla97C07G144210.178.873267.6056
AT3G02660arabidopsis_thalianaAT3G02660.274.559763.6008vigna_radiataVradi06g06560.180.04268.2773
AT3G02660arabidopsis_thalianaAT3G02660.270.841558.5127amborella_trichopodaERM9381173.131360.404
AT3G02660arabidopsis_thalianaAT3G02660.275.929663.9922vigna_unguiculataVigun08g133000.1.v1.2.CDS.181.512668.6975
AT3G02660arabidopsis_thalianaAT3G02660.275.733964.7749prunus_aviumPav_sc0001196.1_g290.1.mk:CDS:179.793868.2474
AT3G02660arabidopsis_thalianaAT3G02660.274.951161.4481phaseolus_vulgarisESW1405680.125565.6904
AT3G02660arabidopsis_thalianaAT3G02660.271.8261.4481asparagus_officinalisONK6605976.299465.2807
AT3G02660arabidopsis_thalianaAT3G02660.273.189863.0137pisum_sativumPsat5g150600.1.cds175.251564.7887
AT3G02660arabidopsis_thalianaAT3G02660.260.469751.0763brachypodium_distachyonKQK1569552.372944.2373
AT3G02660arabidopsis_thalianaAT3G02660.270.450159.0998brachypodium_distachyonKQJ9705670.312558.9844
AT3G02660arabidopsis_thalianaAT3G02660.269.86360.8611quercus_subercds-POE60058.17565.3361
AT3G02660arabidopsis_thalianaAT3G02660.272.015763.7965ananas_comosusAco000651.1.mrna1.cds171.734963.5478
AT3G02660arabidopsis_thalianaAT3G02660.298.238797.2603arabidopsis_lyratafgenesh2_kg.3__208__AT3G02660.198.238797.2603
AT3G02660arabidopsis_thalianaAT3G02660.274.951164.1879quercus_lobataQL10p019537:mrna:CDS:177.373766.2626
AT3G02660arabidopsis_thalianaAT3G02660.274.168362.4266capsicum_annuumPHT7603974.023462.3047
AT3G02660arabidopsis_thalianaAT3G02660.267.710457.1429lupinus_angustifoliusOIV9198383.980670.8738
AT3G02660arabidopsis_thalianaAT3G02660.275.733964.9706lupinus_angustifoliusOIW1409475.882465.098
AT3G02660arabidopsis_thalianaAT3G02660.291.585188.2583eutrema_salsugineumESQ4984793.787690.3808
AT3G02660arabidopsis_thalianaAT3G02660.298.043196.8689arabidopsis_hallerig02501.t1.cds198.043196.8689
AT3G02660arabidopsis_thalianaAT3G02660.260.27451.4677cajanus_cajanC.cajan_05438.t79.792768.1347
AT3G02660arabidopsis_thalianaAT3G02660.274.36463.0137solanum_tuberosumPGSC0003DMT40005919572.796961.6858
AT3G02660arabidopsis_thalianaAT3G02660.270.058758.9041setaria_viridisTKV9341872.469660.9312
AT3G02660arabidopsis_thalianaAT3G02660.270.450158.7084oryza_nivaraONIVA01G18410.166.914555.7621
AT3G02660arabidopsis_thalianaAT3G02660.233.659527.593ipomoea_trilobaitb13g10720.t163.235351.8382
AT3G02660arabidopsis_thalianaAT3G02660.245.009838.3562ipomoea_trilobaitb13g10670.t185.185272.5926
AT3G02660arabidopsis_thalianaAT3G02660.275.929664.1879ipomoea_trilobaitb13g10570.t277.445165.4691
AT3G02660arabidopsis_thalianaAT3G02660.268.297558.317ipomoea_trilobaitb13g10640.t174.892763.9485
AT3G02660arabidopsis_thalianaAT3G02660.232.289627.0059ipomoea_trilobaitb13g10660.t136.585430.5987
AT3G02660arabidopsis_thalianaAT3G02660.270.841559.2955oryza_glumipatulaOGLUM01G19640.172.83760.9658
AT3G02660arabidopsis_thalianaAT3G02660.270.058758.5127zea_maysZm00001eb080850_P00172.177460.2823
AT3G02660arabidopsis_thalianaAT3G02660.274.559763.2094sesamum_indicumSIN_1018317.t32.703927.7253
AT3G02660arabidopsis_thalianaAT3G02660.269.86357.7299lolium_perennecds.KYUSt_chr1.1721970.833358.5317
AT3G02660arabidopsis_thalianaAT3G02660.266.927651.0763chara_brauniiGBG7191246.59435.5586
AT3G02660arabidopsis_thalianaAT3G02660.244.422728.7671ciona_savignyiENSCSAVP0000000248749.347831.9565
AT3G02660arabidopsis_thalianaAT3G02660.288.258382.7789brassica_junceacds.BjuA03g30080S90.284.6
AT3G02660arabidopsis_thalianaAT3G02660.233.072431.7025brassica_junceacds.BjuUnng22400S95.480291.5254
AT3G02660arabidopsis_thalianaAT3G02660.290.215385.1272brassica_junceacds.BjuA01g00690S91.650186.4811
AT3G02660arabidopsis_thalianaAT3G02660.292.563687.8669brassica_junceacds.BjuB07g51310S92.382887.6953
AT3G02660arabidopsis_thalianaAT3G02660.289.628285.91brassica_junceacds.BjuB07g28790S92.152988.33
AT3G02660arabidopsis_thalianaAT3G02660.268.884558.317oryza_brachyanthaOB01G26570.170.119559.3625
AT3G02660arabidopsis_thalianaAT3G02660.275.342564.5793glycine_maxKRH7280467.307757.6923
AT3G02660arabidopsis_thalianaAT3G02660.276.125265.7534glycine_maxKRH1714779.387868.5714
AT3G02660arabidopsis_thalianaAT3G02660.263.209444.0313cyanidioschyzon_merolaeCMQ275CT61.877443.1034
AT3G02660arabidopsis_thalianaAT3G02660.277.690866.5362corymbia_citriodoracds-KAF8013291.177.843166.6667
AT3G02660arabidopsis_thalianaAT3G02660.271.232959.0998aegilops_tauschiiAET1Gv20383800.166.544855.2102
AT3G02660arabidopsis_thalianaAT3G02660.259.491250.2935triticum_urartuTuG1812G0100001714.01.T0168.62358.0135
AT3G02660arabidopsis_thalianaAT3G02660.266.536255.5773oryza_longistaminataKN540250.1_FGP00349.204141.0999
AT3G02660arabidopsis_thalianaAT3G02660.271.428660.6654fraxinus_excelsiorFRAEX38873_v2_000321230.1.cds184.883772.093
AT3G02660arabidopsis_thalianaAT3G02660.276.125263.9922fraxinus_excelsiorFRAEX38873_v2_000079970.1.cds78.744966.1943
AT3G02660arabidopsis_thalianaAT3G02660.270.450157.9256avena_sativa_sangAVESA.00010b.r2.1CG0096290.1.CDS.170.726958.1532
AT3G02660arabidopsis_thalianaAT3G02660.270.841557.9256avena_sativa_sangAVESA.00010b.r2.1DG0188820.1.CDS.171.119858.1532
AT3G02660arabidopsis_thalianaAT3G02660.270.841557.9256avena_sativa_sangAVESA.00010b.r2.1AG0069750.1.CDS.171.119858.1532
AT3G02660arabidopsis_thalianaAT3G02660.273.776963.7965musa_acuminataMa08_p24360.170.467360.9346
AT3G02660arabidopsis_thalianaAT3G02660.270.841559.0998oryza_glaberrimaORGLA01G0137600.172.83760.7646
AT3G02660arabidopsis_thalianaAT3G02660.271.037258.9041hordeum_vulgareHORVU.MOREX.r3.1HG0042100.1.CDS170.898458.7891
AT3G02660arabidopsis_thalianaAT3G02660.271.037259.6869triticum_turgidumTRITD1Av1G093320.145.60338.3166
AT3G02660arabidopsis_thalianaAT3G02660.270.450158.7084panicum_halliiPUZ3866072.144360.1202
AT3G02660arabidopsis_thalianaAT3G02660.270.450158.7084echinochloa_crusgalliscaffold128.98.cds72.580660.4839
AT3G02660arabidopsis_thalianaAT3G02660.269.667358.7084echinochloa_crusgalliscaffold156.174.cds71.342760.1202
AT3G02660arabidopsis_thalianaAT3G02660.268.493157.3386echinochloa_crusgalliscaffold165.154.cds26.717622.3664
AT3G02660arabidopsis_thalianaAT3G02660.269.080257.5342echinochloa_crusgalliscaffold52.456.cds76.241963.4989
AT3G02660arabidopsis_thalianaAT3G02660.260.469749.7065echinochloa_crusgalliscaffold360.36.cds70.227357.7273
AT3G02660arabidopsis_thalianaAT3G02660.273.776964.3836actinidia_chinensisPSS1826474.212664.7638
AT3G02660arabidopsis_thalianaAT3G02660.222.700620.7436actinidia_chinensisPSS3396785.294177.9412
AT3G02660arabidopsis_thalianaAT3G02660.276.712366.3405citrus_clementinaESR6010679.513268.7627
AT3G02660arabidopsis_thalianaAT3G02660.270.841559.2955oryza_indicaBGIOSGA003594-PA72.83760.9658
AT3G02660arabidopsis_thalianaAT3G02660.269.86355.5773selaginella_moellendorffiiEFJ1890676.445460.8137
AT3G02660arabidopsis_thalianaAT3G02660.269.86355.9687selaginella_moellendorffiiEFJ0600976.445461.242
AT3G02660arabidopsis_thalianaAT3G02660.270.841559.2955oryza_sativaOs01t0500900-0172.83760.9658
AT3G02660arabidopsis_thalianaAT3G02660.246.77129.7456homo_sapiensENSP0000032065850.104831.8658
AT3G02660arabidopsis_thalianaAT3G02660.270.450158.7084triticum_aestivumTraesCS1B02G169100.172.289260.241
AT3G02660arabidopsis_thalianaAT3G02660.271.232959.0998triticum_aestivumTraesCS1D02G148500.1.cds166.544855.2102
AT3G02660arabidopsis_thalianaAT3G02660.271.232959.0998triticum_aestivumTraesCS1A02G151500.1.cds171.093858.9844
AT3G02660arabidopsis_thalianaAT3G02660.270.450158.9041oryza_rufipogonORUFI01G18700.167.039156.0521
AT3G02660arabidopsis_thalianaAT3G02660.270.841558.317secale_cerealeSECCE1Rv1G0024170.1.CDS.170.703158.2031
AT3G02660arabidopsis_thalianaAT3G02660.277.103767.7104gossypium_raimondiiKJB1292580.244470.4684
AT3G02660arabidopsis_thalianaAT3G02660.273.385560.8611helianthus_annuusCDS:HanXRQr2_Chr08g0343151.179.449265.8898
AT3G02660arabidopsis_thalianaAT3G02660.270.450158.9041oryza_punctataOPUNC01G17470.172.434660.5634
AT3G02660arabidopsis_thalianaAT3G02660.271.232959.2955eragrostis_tefEt_1A_005968.CDS76.470663.6555
AT3G02660arabidopsis_thalianaAT3G02660.271.428659.4912eragrostis_tefEt_1B_010834.CDS76.680763.8655
AT3G02660arabidopsis_thalianaAT3G02660.273.972662.4266medicago_truncatulaKEH3442475.663.8
AT3G02660arabidopsis_thalianaAT3G02660.272.994162.2309medicago_truncatulaKEH3233077.385965.9751
AT3G02660arabidopsis_thalianaAT3G02660.270.254458.9041saccharum_spontaneumSspon.05G0009970-2D-mRNA-163.427653.1802
AT3G02660arabidopsis_thalianaAT3G02660.266.731956.1644saccharum_spontaneumSspon.05G0009970-1A-mRNA-1:cds60.568450.9769
AT3G02660arabidopsis_thalianaAT3G02660.270.450158.9041sorghum_bicolorOQU8170572.580660.6855
AT3G02660arabidopsis_thalianaAT3G02660.271.624359.0998triticum_dicoccoidesTRIDC1AG023020.270.384658.0769
AT3G02660arabidopsis_thalianaAT3G02660.246.77140.5088triticum_dicoccoidesTRIDC1BG027880.285.971274.4604
AT3G02660arabidopsis_thalianaAT3G02660.274.36463.6008coffea_canephoraCDP1909172.38161.9048
AT3G02660arabidopsis_thalianaAT3G02660.277.690867.319manihot_esculentaOAY5260278.458567.9842
AT3G02660arabidopsis_thalianaAT3G02660.274.951162.2309kalanchoe_fedtschenkoiKaladp0055s0527.1.v1.169.384157.6087
AT3G02660arabidopsis_thalianaAT3G02660.248.72841.0959kalanchoe_fedtschenkoiKaladp0034s0171.1.v1.169.943858.9888
AT3G02660arabidopsis_thalianaAT3G02660.274.168363.2094trifolium_pratenseTp57577_TGAC_v2_mRNA2580376.411365.121
AT3G02660arabidopsis_thalianaAT3G02660.289.236884.1487brassica_rapa_ro18A01p059030.1_BraROA.160.079156.6535
AT3G02660arabidopsis_thalianaAT3G02660.283.95379.0607brassica_rapa_ro18A03g504110.1_BraROA.183.30178.4466
AT3G02660arabidopsis_thalianaAT3G02660.275.538267.1233eucalyptus_grandisKCW5573380.584571.6075
AT3G02660arabidopsis_thalianaAT3G02660.247.358140.9002dioscorea_rotundataDRNTG_08967.1.cds187.050475.1799
AT3G02660arabidopsis_thalianaAT3G02660.273.385562.4266dioscorea_rotundataDRNTG_00004.2.cds174.257463.1683
AT3G02660arabidopsis_thalianaAT3G02660.275.146864.1879prunus_persicaONI3616579.175367.6289
AT3G02660arabidopsis_thalianaAT3G02660.271.037257.9256avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000338.268.233155.6391
AT3G02660arabidopsis_thalianaAT3G02660.271.037257.9256avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0001028.167.09854.7135
AT3G02660arabidopsis_thalianaAT3G02660.271.037257.9256avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000379.268.361655.7439
AT3G02660arabidopsis_thalianaAT3G02660.275.342564.1879chenopodium_quinoaAUR62033498-RA:cds77.464865.996
AT3G02660arabidopsis_thalianaAT3G02660.262.035252.4462digitaria_exilisDexi9B01G0020410.1:cds34.682729.3217
AT3G02660arabidopsis_thalianaAT3G02660.268.493157.3386digitaria_exilisDexi9A01G0020880.1:cds37.878831.71
AT3G02660arabidopsis_thalianaAT3G02660.270.450158.7084oryza_barthiiOBART01G16880.165.813554.8446
AT3G02660arabidopsis_thalianaAT3G02660.249.706542.8571brassica_oleraceaBo1g156220.156.950749.1031
AT3G02660arabidopsis_thalianaAT3G02660.288.649783.366brassica_oleraceaBo3g055780.191.330685.8871
AT3G02660arabidopsis_thalianaAT3G02660.226.027423.2877brassica_oleraceaBo1g158830.165.196158.3333
AT3G02660arabidopsis_thalianaAT3G02660.291.780885.7143brassica_oleraceaBo1g156210.181.99376.5734
AT3G02660arabidopsis_thalianaAT3G02660.275.342564.3836prunus_dulcisVVA3204979.381467.8351
AT3G02660arabidopsis_thalianaAT3G02660.261.252444.227galdieria_sulphurariaEME3058662.47545.1098
AT3G02660arabidopsis_thalianaAT3G02660.276.125265.362corylus_avellanaCav11g09010.t135.590130.5581
AT3G02660arabidopsis_thalianaAT3G02660.268.884557.9256leersia_perrieriLPERR01G22120.164.82554.512
AT3G02660arabidopsis_thalianaAT3G02660.263.013754.2074olea_europaeaOE9A056556C178.536667.561
AT3G02660arabidopsis_thalianaAT3G02660.275.733963.9922olea_europaeaOE9A075386C178.49966.3286
AT3G02660arabidopsis_thalianaAT3G02660.251.27231.7025saccharomyces_cerevisiaeYPL097W53.25232.9268
AT3G02660arabidopsis_thalianaAT3G02660.276.516665.9491pistacia_veracds-EVM0030206.179.633468.6354
AT3G02660arabidopsis_thalianaAT3G02660.250.293531.7025drosophila_melanogasterFBpp007233455.387934.9138
AT3G02660arabidopsis_thalianaAT3G02660.235.22532.4853brassica_napusCDY2868672.874567.2065
AT3G02660arabidopsis_thalianaAT3G02660.243.248540.3131brassica_napusCDX9200884.351178.626
AT3G02660arabidopsis_thalianaAT3G02660.288.258383.1703brassica_napusCDX7424090.285
AT3G02660arabidopsis_thalianaAT3G02660.270.645859.0998oryza_meridionalisOMERI01G15380.172.635860.7646
AT3G02660arabidopsis_thalianaAT3G02660.295.890494.1292camelina_sativaCsa15g002350.1.cds195.890494.1292
AT3G02660arabidopsis_thalianaAT3G02660.295.303393.3464camelina_sativaCsa01g002280.1.cds195.303393.3464
AT3G02660arabidopsis_thalianaAT3G02660.295.890493.7378camelina_sativaCsa19g004790.1.cds195.890493.7378
AT3G02660arabidopsis_thalianaAT3G02660.258.708449.7065malus_domestica_goldenCDS:MD08G0196500.181.967269.3989
AT3G02660arabidopsis_thalianaAT3G02660.276.320964.5793malus_domestica_goldenmRNA:MD15G03622007866
AT3G02660arabidopsis_thalianaAT3G02660.274.951162.0352daucus_carotaKZN0516179.625865.9044
AT3G02660arabidopsis_thalianaAT3G02660.276.90866.9276rosa_chinensisPRQ1979580.532870.082
AT3G02660arabidopsis_thalianaAT3G02660.274.755463.9922juglans_regiacds.Jr01_30890_p173.745263.1274
AT3G02660arabidopsis_thalianaAT3G02660.274.36463.6008juglans_regiacds.Jr01_30910_p172.38161.9048
AT3G02660arabidopsis_thalianaAT3G02660.274.755463.9922juglans_regiacds.Jr01_30900_p172.761962.2857
AT3G02660arabidopsis_thalianaAT3G02660.275.146864.1879juglans_regiacds.Jr01_30920_p178.367366.9388
AT3G02660arabidopsis_thalianaAT3G02660.275.538264.5793juglans_regiacds.Jr01_30930_p177.5166.2651
AT3G02660arabidopsis_thalianaAT3G02660.271.624360.4697nymphaea_colorataNC11G0209500.1:cds64.210554.2105
AT3G02660arabidopsis_thalianaAT3G02660.274.951163.6008vigna_angularisKOM4718080.462268.2773
AT3G02660arabidopsis_thalianaAT3G02660.270.058759.0998setaria_italicaKQK8875272.469661.1336
AT3G02660arabidopsis_thalianaAT3G02660.271.232957.7299physcomitrium_patensPp3c3_3070V3.172.5158.7649
AT3G02660arabidopsis_thalianaAT3G02660.274.755463.4051vitis_viniferaVitvi14g00615_P00178.762966.8041
AT3G02660arabidopsis_thalianaAT3G02660.271.8261.6438cynara_cardunculusKVH6706475.670164.9485

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005739located_in mitochondrion1IDAArabidopsis_thaliana(3702)Component
GO:0006437involved_in tyrosyl-tRNA aminoacylation1IEAArabidopsis_thaliana(3702)Process
GO:0009507located_in chloroplast3HDA,IDA,ISMArabidopsis_thaliana(3702)Component
GO:0009570located_in chloroplast stroma1HDAArabidopsis_thaliana(3702)Component
GO:0009793acts_upstream_of_or_within embryo development ending in seed dormancy1IMPArabidopsis_thaliana(3702)Process

Expression