Description

Ensembl ID AT2G46230 Gene ID 819231 Accession -
Symbol AT2G46230 Alias - Full Name PIN domain-like family protein
Status Confidence Length 1761 bases Strand Minus strand
Position 2 : 18984199 - 18985959 RNA binding domain Fcf1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT2G46230 Fcf1 PF04900 2.4e-39 1
AT2G46230 Fcf1 PF04900 9.9e-30 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT2G46230-202 AT2G46230 1048 181aa AT2G46230

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G46230arabidopsis_thalianaAT1G26530.190.449486.5169arabidopsis_thalianaAT2G46230.182.142978.5714
AT2G46230arabidopsis_thalianaAT2G34570.125.978614.2349arabidopsis_thalianaAT2G46230.137.244920.4082

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G46230arabidopsis_thalianaAT2G46230.143.877637.2449chondrus_crispusCDF3997878.899166.9725
AT2G46230arabidopsis_thalianaAT2G46230.180.10266.8367chlamydomonas_reinhardtiiPNW7217081.770868.2292
AT2G46230arabidopsis_thalianaAT2G46230.188.775577.551marchantia_polymorphaPTQ4757487.437276.3819
AT2G46230arabidopsis_thalianaAT2G46230.153.061240.3061papaver_somniferumRZC7378839.245329.8113
AT2G46230arabidopsis_thalianaAT2G46230.191.836783.6735cannabis_sativa_femalecds.evm.model.07.126591.836783.6735
AT2G46230arabidopsis_thalianaAT2G46230.193.367382.1429theobroma_cacaoEOX9582392.424281.3131
AT2G46230arabidopsis_thalianaAT2G46230.188.775581.1225beta_vulgarisKMT2038087.878880.303
AT2G46230arabidopsis_thalianaAT2G46230.182.653175cucumis_meloMELO3C009766.2.188.043579.8913
AT2G46230arabidopsis_thalianaAT2G46230.192.346982.1429cucumis_sativusKGN5945491.414181.3131
AT2G46230arabidopsis_thalianaAT2G46230.189.795980.102populus_trichocarpaPotri.002G166200.1.v4.188.888979.2929
AT2G46230arabidopsis_thalianaAT2G46230.190.816382.1429populus_trichocarpaPotri.014G092600.3.v4.189.89981.3131
AT2G46230arabidopsis_thalianaAT2G46230.190.306181.6327solanum_lycopersicumSolyc03g121140.3.120.946718.9349
AT2G46230arabidopsis_thalianaAT2G46230.170.918451.0204caenorhabditis_elegansF30A10.9.170.918451.0204
AT2G46230arabidopsis_thalianaAT2G46230.179.591871.4286lactuca_sativacds-PLY77483.190.697781.3953
AT2G46230arabidopsis_thalianaAT2G46230.159.693951.5306lactuca_sativacds-PLY80511.191.406278.9062
AT2G46230arabidopsis_thalianaAT2G46230.176.020463.7755ostreococcus_lucimarinusABO9651474.562.5
AT2G46230arabidopsis_thalianaAT2G46230.187.755178.0612eragrostis_curvulaTVU1245766.666759.3023
AT2G46230arabidopsis_thalianaAT2G46230.192.346982.6531citrullus_lanatusCla97C10G199020.191.414181.8182
AT2G46230arabidopsis_thalianaAT2G46230.188.265379.0816vigna_radiataVradi0234s00150.182.775174.1627
AT2G46230arabidopsis_thalianaAT2G46230.138.775536.7347amborella_trichopodaERN0909791.566386.747
AT2G46230arabidopsis_thalianaAT2G46230.189.285781.1225vigna_unguiculataVigun05g229800.1.v1.288.383880.303
AT2G46230arabidopsis_thalianaAT2G46230.189.285780.6122phaseolus_vulgarisESW2199088.383879.798
AT2G46230arabidopsis_thalianaAT2G46230.143.367335.7143asparagus_officinalisONK6648963.432852.2388
AT2G46230arabidopsis_thalianaAT2G46230.188.265379.5918pisum_sativumPsat3g005280.1.cds87.373778.7879
AT2G46230arabidopsis_thalianaAT2G46230.187.755178.5714brachypodium_distachyonKQK1951486.432277.3869
AT2G46230arabidopsis_thalianaAT2G46230.181.632771.4286quercus_subercds-POE98170.186.021575.2688
AT2G46230arabidopsis_thalianaAT2G46230.183.673573.4694quercus_subercds-POE51273.189.617578.6885
AT2G46230arabidopsis_thalianaAT2G46230.190.306181.6327ananas_comosusAco000356.1.mrna189.393980.8081
AT2G46230arabidopsis_thalianaAT2G46230.185.204180.102arabidopsis_lyratafgenesh1_pm.C_scaffold_400233493.820288.2022
AT2G46230arabidopsis_thalianaAT2G46230.189.795979.0816quercus_lobataQL04p058903:mrna88.888978.2828
AT2G46230arabidopsis_thalianaAT2G46230.188.265377.551quercus_lobataQL06p021685:mrna71.487662.8099
AT2G46230arabidopsis_thalianaAT2G46230.181.122571.9388capsicum_annuumPHT8893676.442367.7885
AT2G46230arabidopsis_thalianaAT2G46230.188.775581.1225lupinus_angustifoliusOIW2168788.324980.7107
AT2G46230arabidopsis_thalianaAT2G46230.196.938890.3061eutrema_salsugineumESQ3926296.938890.3061
AT2G46230arabidopsis_thalianaAT2G46230.150.510249.4898arabidopsis_hallerig09709.t186.08784.3478
AT2G46230arabidopsis_thalianaAT2G46230.198.469496.4286arabidopsis_hallerig09706.t198.469496.4286
AT2G46230arabidopsis_thalianaAT2G46230.189.795981.1225cajanus_cajanC.cajan_32965.t74.261667.0886
AT2G46230arabidopsis_thalianaAT2G46230.188.775580.102cajanus_cajanC.cajan_10831.t81.690173.7089
AT2G46230arabidopsis_thalianaAT2G46230.191.326583.1633solanum_tuberosumPGSC0003DMT40000670690.40482.3232
AT2G46230arabidopsis_thalianaAT2G46230.187.755178.0612setaria_viridisTKW2012786.432276.8844
AT2G46230arabidopsis_thalianaAT2G46230.185.714375.5102oryza_nivaraONIVA06G05240.180.382870.8134
AT2G46230arabidopsis_thalianaAT2G46230.190.816383.1633ipomoea_trilobaitb11g00190.t189.89982.3232
AT2G46230arabidopsis_thalianaAT2G46230.184.693975oryza_glumipatulaOGLUM06G04000.178.301969.3396
AT2G46230arabidopsis_thalianaAT2G46230.187.244978.0612zea_maysZm00001eb376230_P00185.929676.8844
AT2G46230arabidopsis_thalianaAT2G46230.177.55168.3673zea_maysZm00001eb376200_P00184.444474.4444
AT2G46230arabidopsis_thalianaAT2G46230.187.244978.0612zea_maysZm00001eb376300_P00185.929676.8844
AT2G46230arabidopsis_thalianaAT2G46230.177.040868.3673zea_maysZm00001eb376270_P00183.888974.4444
AT2G46230arabidopsis_thalianaAT2G46230.187.755178.0612zea_maysZm00001eb376330_P00186.432276.8844
AT2G46230arabidopsis_thalianaAT2G46230.182.142973.9796lolium_perennecds.KYUSt_chr7.375295045.0311
AT2G46230arabidopsis_thalianaAT2G46230.182.142971.9388lolium_perennecds.KYUSt_chr1.3885066.80558.5062
AT2G46230arabidopsis_thalianaAT2G46230.185.714373.9796chara_brauniiGBG7570584.422172.8643
AT2G46230arabidopsis_thalianaAT2G46230.194.89887.7551arabis_alpinaKFK3742194.89887.7551
AT2G46230arabidopsis_thalianaAT2G46230.173.979661.7347ciona_savignyiENSCSAVP0000000841576.315863.6842
AT2G46230arabidopsis_thalianaAT2G46230.193.877585.7143brassica_junceacds.BjuB06g58210S93.877585.7143
AT2G46230arabidopsis_thalianaAT2G46230.194.89886.7347brassica_junceacds.BjuA05g01470S94.89886.7347
AT2G46230arabidopsis_thalianaAT2G46230.188.265377.551oryza_brachyanthaOB06G13640.186.934776.3819
AT2G46230arabidopsis_thalianaAT2G46230.165.816356.1224glycine_maxKRG9709770.879160.4396
AT2G46230arabidopsis_thalianaAT2G46230.190.306181.6327glycine_maxKRH2674289.393980.8081
AT2G46230arabidopsis_thalianaAT2G46230.175.510265.8163glycine_maxKRH6885077.486967.5393
AT2G46230arabidopsis_thalianaAT2G46230.190.306181.6327glycine_maxKRH2259089.393980.8081
AT2G46230arabidopsis_thalianaAT2G46230.173.469454.5918cyanidioschyzon_merolaeCML046CT73.469454.5918
AT2G46230arabidopsis_thalianaAT2G46230.192.346981.6327corymbia_citriodoracds-KAF8026946.191.414180.8081
AT2G46230arabidopsis_thalianaAT2G46230.187.244977.551aegilops_tauschiiAET7Gv20298800.171.848763.8655
AT2G46230arabidopsis_thalianaAT2G46230.187.755177.551triticum_urartuTuG1812G0700001208.01.T0186.432276.3819
AT2G46230arabidopsis_thalianaAT2G46230.186.734776.0204oryza_longistaminataKN538819.1_FGP00182.926872.6829
AT2G46230arabidopsis_thalianaAT2G46230.191.326582.6531fraxinus_excelsiorFRAEX38873_v2_000000640.1.cds90.40481.8182
AT2G46230arabidopsis_thalianaAT2G46230.187.244979.5918avena_sativa_sangAVESA.00010b.r2.5CG0862470.1.CDS85.929678.392
AT2G46230arabidopsis_thalianaAT2G46230.187.755179.0816avena_sativa_sangAVESA.00010b.r2.1AG0038050.1.CDS86.432277.8895
AT2G46230arabidopsis_thalianaAT2G46230.187.244979.5918avena_sativa_sangAVESA.00010b.r2.7AG1204260.1.CDS85.929678.392
AT2G46230arabidopsis_thalianaAT2G46230.163.775559.1837avena_sativa_sangAVESA.00010b.r2.7DG1339810.1.CDS81.168875.3247
AT2G46230arabidopsis_thalianaAT2G46230.187.244978.5714avena_sativa_sangAVESA.00010b.r2.1AG0006500.1.CDS85.929677.3869
AT2G46230arabidopsis_thalianaAT2G46230.187.755179.0816avena_sativa_sangAVESA.00010b.r2.1DG0157140.1.CDS86.432277.8895
AT2G46230arabidopsis_thalianaAT2G46230.190.306182.1429musa_acuminataMa04_p21960.189.393981.3131
AT2G46230arabidopsis_thalianaAT2G46230.189.285781.6327musa_acuminataMa05_p11390.155.732550.9554
AT2G46230arabidopsis_thalianaAT2G46230.186.734776.5306oryza_glaberrimaORGLA06G0036300.180.188770.7547
AT2G46230arabidopsis_thalianaAT2G46230.186.734776.5306hordeum_vulgareHORVU.MOREX.r3.7HG0654170.183.743873.8916
AT2G46230arabidopsis_thalianaAT2G46230.187.755178.5714triticum_turgidumTRITD7Bv1G004470.484.729175.8621
AT2G46230arabidopsis_thalianaAT2G46230.186.224576.0204triticum_turgidumTRITD7Av1G034720.179.71770.283
AT2G46230arabidopsis_thalianaAT2G46230.188.775578.5714panicum_halliiPUZ6210587.437277.3869
AT2G46230arabidopsis_thalianaAT2G46230.186.734777.0408echinochloa_crusgalliscaffold367.4.cds85.427175.8794
AT2G46230arabidopsis_thalianaAT2G46230.185.714375.5102echinochloa_crusgalliscaffold10.324.cds84.848574.7475
AT2G46230arabidopsis_thalianaAT2G46230.185.714375.5102echinochloa_crusgalliscaffold34.443.cds78.873269.4836
AT2G46230arabidopsis_thalianaAT2G46230.190.816381.1225actinidia_chinensisPSS0398389.89980.303
AT2G46230arabidopsis_thalianaAT2G46230.190.816381.1225actinidia_chinensisPSS2424289.89980.303
AT2G46230arabidopsis_thalianaAT2G46230.192.346982.1429citrus_clementinaESR5815591.414181.3131
AT2G46230arabidopsis_thalianaAT2G46230.188.265378.0612oryza_indicaBGIOSGA021867-PA86.934776.8844
AT2G46230arabidopsis_thalianaAT2G46230.186.224576.5306selaginella_moellendorffiiEFJ1214684.575
AT2G46230arabidopsis_thalianaAT2G46230.185.714376.0204selaginella_moellendorffiiEFJ2938677.419468.6636
AT2G46230arabidopsis_thalianaAT2G46230.188.265378.0612oryza_sativaOs06t0158600-0186.934776.8844
AT2G46230arabidopsis_thalianaAT2G46230.180.612266.3265homo_sapiensENSP0000034439379.79865.6566
AT2G46230arabidopsis_thalianaAT2G46230.187.755177.551triticum_aestivumTraesCS7A02G117600.186.432276.3819
AT2G46230arabidopsis_thalianaAT2G46230.187.244977.551triticum_aestivumTraesCS7D02G113200.185.929676.3819
AT2G46230arabidopsis_thalianaAT2G46230.187.755178.5714triticum_aestivumTraesCS7B02G014700.286.432277.3869
AT2G46230arabidopsis_thalianaAT2G46230.185.714375.5102oryza_rufipogonORUFI06G03940.180.382870.8134
AT2G46230arabidopsis_thalianaAT2G46230.187.755178.0612secale_cerealeSECCE4Rv1G0262380.186.432276.8844
AT2G46230arabidopsis_thalianaAT2G46230.193.877581.6327gossypium_raimondiiKJB4143492.929380.8081
AT2G46230arabidopsis_thalianaAT2G46230.192.346982.6531helianthus_annuusmRNA:HanXRQr2_Chr17g082050191.414181.8182
AT2G46230arabidopsis_thalianaAT2G46230.145.408237.2449oryza_punctataOPUNC06G03680.176.068462.3932
AT2G46230arabidopsis_thalianaAT2G46230.186.224578.0612eragrostis_tefEt_2B_020721.CDS79.342771.831
AT2G46230arabidopsis_thalianaAT2G46230.186.224577.551eragrostis_tefEt_2A_016556.CDS83.251274.8768
AT2G46230arabidopsis_thalianaAT2G46230.187.755178.0612medicago_truncatulaAES7673586.868777.2727
AT2G46230arabidopsis_thalianaAT2G46230.187.755179.5918medicago_truncatulaAES8273386.868778.7879
AT2G46230arabidopsis_thalianaAT2G46230.171.428663.2653saccharum_spontaneumSspon.08G0014460-2D-mRNA-1:cds83.832374.2515
AT2G46230arabidopsis_thalianaAT2G46230.152.55147.9592saccharum_spontaneumSspon.08G0014460-1A-mRNA-1:cds92.792884.6847
AT2G46230arabidopsis_thalianaAT2G46230.187.244978.0612sorghum_bicolorEER8923285.929676.8844
AT2G46230arabidopsis_thalianaAT2G46230.186.224577.0408triticum_dicoccoidesTRIDC7BG002060.384.079675.1244
AT2G46230arabidopsis_thalianaAT2G46230.186.224576.0204triticum_dicoccoidesTRIDC7AG013740.480.861271.2919
AT2G46230arabidopsis_thalianaAT2G46230.148.979644.3878coffea_canephoraCDP2169386.486578.3784
AT2G46230arabidopsis_thalianaAT2G46230.191.326581.1225coffea_canephoraCDP0873590.40480.303
AT2G46230arabidopsis_thalianaAT2G46230.190.816381.1225manihot_esculentaOAY3725789.89980.303
AT2G46230arabidopsis_thalianaAT2G46230.187.244977.551kalanchoe_fedtschenkoiKaladp0081s0268.1.v1.184.653575.2475
AT2G46230arabidopsis_thalianaAT2G46230.187.244980.102trifolium_pratenseTp57577_TGAC_v2_mRNA485886.363679.2929
AT2G46230arabidopsis_thalianaAT2G46230.194.89886.2245brassica_rapa_ro18A05p002720.1_BraROA.191.625683.2512
AT2G46230arabidopsis_thalianaAT2G46230.192.346980.6122eucalyptus_grandisKCW7154191.414179.798
AT2G46230arabidopsis_thalianaAT2G46230.190.816382.1429dioscorea_rotundataDRNTG_09784.189.89981.3131
AT2G46230arabidopsis_thalianaAT2G46230.191.836782.6531prunus_persicaONI2330590.909181.8182
AT2G46230arabidopsis_thalianaAT2G46230.187.244979.5918avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0003112.185.929678.392
AT2G46230arabidopsis_thalianaAT2G46230.187.755179.0816avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0001952.259.515653.6332
AT2G46230arabidopsis_thalianaAT2G46230.173.469463.7755avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0003308.171.641862.1891
AT2G46230arabidopsis_thalianaAT2G46230.187.755179.0816avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0001931.163.703757.4074
AT2G46230arabidopsis_thalianaAT2G46230.188.265378.5714chenopodium_quinoaAUR62004429-RA:cds85.221775.8621
AT2G46230arabidopsis_thalianaAT2G46230.190.306181.1225chenopodium_quinoaAUR62022636-RA:cds89.393980.303
AT2G46230arabidopsis_thalianaAT2G46230.187.244977.551digitaria_exilisDexi4A01G0004240.1:cds77.727369.0909
AT2G46230arabidopsis_thalianaAT2G46230.188.265378.5714digitaria_exilisDexi4B01G0006660.1:cds86.934777.3869
AT2G46230arabidopsis_thalianaAT2G46230.186.734776.0204oryza_barthiiOBART06G03880.180.188770.283
AT2G46230arabidopsis_thalianaAT2G46230.194.89887.2449brassica_oleraceaBo4g196100.181.578975
AT2G46230arabidopsis_thalianaAT2G46230.191.836782.6531prunus_dulcisVVA2369762.06955.8621
AT2G46230arabidopsis_thalianaAT2G46230.172.959256.1224galdieria_sulphurariaEME3137972.588855.8376
AT2G46230arabidopsis_thalianaAT2G46230.183.163373.9796corylus_avellanaCav07g06900.t173.755765.6109
AT2G46230arabidopsis_thalianaAT2G46230.188.775579.0816leersia_perrieriLPERR08G12210.187.437277.8895
AT2G46230arabidopsis_thalianaAT2G46230.192.346983.6735nicotiana_attenuataOIT0737747.506643.0446
AT2G46230arabidopsis_thalianaAT2G46230.130.10222.9592olea_europaeaOE9A089285C153.636440.9091
AT2G46230arabidopsis_thalianaAT2G46230.190.306180.6122olea_europaeaOE9A098456C270.517962.9482
AT2G46230arabidopsis_thalianaAT2G46230.123.469422.9592olea_europaeaOE9A115724C19290
AT2G46230arabidopsis_thalianaAT2G46230.190.306180.6122olea_europaeaOE9A014302C170.517962.9482
AT2G46230arabidopsis_thalianaAT2G46230.171.428658.1633saccharomyces_cerevisiaeYDR339C74.074160.3175
AT2G46230arabidopsis_thalianaAT2G46230.191.326582.6531pistacia_veracds-EVM0013414.190.40481.8182
AT2G46230arabidopsis_thalianaAT2G46230.171.938857.6531drosophila_melanogasterFBpp007947070.556.5
AT2G46230arabidopsis_thalianaAT2G46230.194.89886.7347brassica_napusCDY6520894.89886.7347
AT2G46230arabidopsis_thalianaAT2G46230.193.877586.2245brassica_napusCDY4202189.320482.0388
AT2G46230arabidopsis_thalianaAT2G46230.192.857185.2041brassica_napusCDY2732681.614374.8879
AT2G46230arabidopsis_thalianaAT2G46230.194.89886.7347brassica_napusCDX7999994.89886.7347
AT2G46230arabidopsis_thalianaAT2G46230.169.387860.7143corchorus_capsularisOMO6436190.666779.3333
AT2G46230arabidopsis_thalianaAT2G46230.187.244976.5306oryza_meridionalisOMERI06G04480.387.244976.5306
AT2G46230arabidopsis_thalianaAT2G46230.196.938893.8775camelina_sativaCsa06g052670.172.796970.4981
AT2G46230arabidopsis_thalianaAT2G46230.187.755184.6939camelina_sativaCsa04g065270.197.727394.3182
AT2G46230arabidopsis_thalianaAT2G46230.197.959294.898camelina_sativaCsa06g037730.197.959294.898
AT2G46230arabidopsis_thalianaAT2G46230.197.959294.898camelina_sativaCsa05g002980.197.959294.898
AT2G46230arabidopsis_thalianaAT2G46230.191.326581.1225malus_domestica_goldenmRNA:MD01G005580090.40480.303
AT2G46230arabidopsis_thalianaAT2G46230.190.306183.6735daucus_carotaKZM9381089.393982.8283
AT2G46230arabidopsis_thalianaAT2G46230.140.306135.2041daucus_carotaKZN0453155.633848.5915
AT2G46230arabidopsis_thalianaAT2G46230.192.346983.1633rosa_chinensisPRQ5835691.414182.3232
AT2G46230arabidopsis_thalianaAT2G46230.191.836779.5918juglans_regiacds.Jr07_07870_p190.909178.7879
AT2G46230arabidopsis_thalianaAT2G46230.183.163375nymphaea_colorataNC9G0112890.1:cds74.770667.4312
AT2G46230arabidopsis_thalianaAT2G46230.186.734777.0408setaria_italicaKQL0967477.272768.6364
AT2G46230arabidopsis_thalianaAT2G46230.188.265375physcomitrium_patensPp3c7_15560V3.287.373774.2424
AT2G46230arabidopsis_thalianaAT2G46230.187.244972.9592physcomitrium_patensPp3c11_12810V3.286.363672.2222
AT2G46230arabidopsis_thalianaAT2G46230.189.285781.6327vitis_viniferaVitvi15g04618_P00188.383880.8081
AT2G46230arabidopsis_thalianaAT2G46230.189.285781.6327vitis_viniferaVitvi15g04598_P00168.897662.9921
AT2G46230arabidopsis_thalianaAT2G46230.162.755151.5306cynara_cardunculusKVH9727761.19450.2488

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003674enables molecular_function1NDArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0016070acts_upstream_of_or_within RNA metabolic process1IEAArabidopsis_thaliana(3702)Process
GO:0043412acts_upstream_of_or_within macromolecule modification1IEAArabidopsis_thaliana(3702)Process
GO:0044085acts_upstream_of_or_within cellular component biogenesis1IEAArabidopsis_thaliana(3702)Process

Expression