Description

Ensembl ID AT2G45640 Gene ID 819172 Accession -
Symbol SAP18 Alias - Full Name SIN3 associated polypeptide P18
Status Confidence Length 1944 bases Strand Minus strand
Position 2 : 18799528 - 18801471 RNA binding domain SAP18
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT2G45640 SAP18 PF06487 9.8e-38 1
AT2G45640 SAP18 PF06487 2.2e-34 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
SAP18-201 AT2G45640 872 152aa AT2G45640

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G45640

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G45640arabidopsis_thalianaAT2G45640.165.131655.2632chlamydomonas_reinhardtiiPNW782676050.9091
AT2G45640arabidopsis_thalianaAT2G45640.178.289561.1842marchantia_polymorphaPTQ3376874.842858.4906
AT2G45640arabidopsis_thalianaAT2G45640.176.315866.4474papaver_somniferumRZC7309974.35964.7436
AT2G45640arabidopsis_thalianaAT2G45640.176.315866.4474papaver_somniferumRZC5761574.838765.1613
AT2G45640arabidopsis_thalianaAT2G45640.179.605367.7632cannabis_sativa_femalecds.novel_model_5044_5bd9a17a70.348859.8837
AT2G45640arabidopsis_thalianaAT2G45640.176.973766.4474ficus_caricaFCD_00006802-RA:cds67.241458.046
AT2G45640arabidopsis_thalianaAT2G45640.184.210575theobroma_cacaoEOX9614183.660174.5098
AT2G45640arabidopsis_thalianaAT2G45640.180.263267.1053beta_vulgarisKMT1219870.930259.3023
AT2G45640arabidopsis_thalianaAT2G45640.178.947467.7632cucumis_meloMELO3C014010.2.172.289262.0482
AT2G45640arabidopsis_thalianaAT2G45640.178.947468.4211cucumis_sativusKGN5594172.289262.6506
AT2G45640arabidopsis_thalianaAT2G45640.176.315866.4474populus_trichocarpaPotri.003G119300.1.v4.172.563.125
AT2G45640arabidopsis_thalianaAT2G45640.182.236871.7105solanum_lycopersicumSolyc05g047690.3.180.128269.8718
AT2G45640arabidopsis_thalianaAT2G45640.152.631638.1579caenorhabditis_elegansC16C10.4.148.192834.9398
AT2G45640arabidopsis_thalianaAT2G45640.178.947470.3947lactuca_sativacds-PLY68673.174.534266.4596
AT2G45640arabidopsis_thalianaAT2G45640.178.947471.0526lactuca_sativacds-PLY88581.17567.5
AT2G45640arabidopsis_thalianaAT2G45640.175.657963.8158eragrostis_curvulaTVU3360858.375649.2386
AT2G45640arabidopsis_thalianaAT2G45640.178.947467.7632citrullus_lanatusCla97C10G187930.165.934156.5934
AT2G45640arabidopsis_thalianaAT2G45640.155.263246.7105vigna_radiataVradi0194s00110.186.597973.1959
AT2G45640arabidopsis_thalianaAT2G45640.182.894773.0263amborella_trichopodaERM9631679.245369.8113
AT2G45640arabidopsis_thalianaAT2G45640.182.236872.3684vigna_unguiculataVigun10g117100.1.v1.282.781572.8477
AT2G45640arabidopsis_thalianaAT2G45640.178.947466.4474prunus_aviumPav_sc0000107.1_g120.1.mk:mrna71.005959.7633
AT2G45640arabidopsis_thalianaAT2G45640.182.894772.3684phaseolus_vulgarisESW0692583.443772.8477
AT2G45640arabidopsis_thalianaAT2G45640.166.447455.2632asparagus_officinalisONK7989439.920933.2016
AT2G45640arabidopsis_thalianaAT2G45640.183.552670.3947pisum_sativumPsat4g150640.1.cds84.10670.8609
AT2G45640arabidopsis_thalianaAT2G45640.176.315862.5brachypodium_distachyonKQJ9300276.821262.9139
AT2G45640arabidopsis_thalianaAT2G45640.180.921168.4211quercus_subercds-POE80642.148.616641.1067
AT2G45640arabidopsis_thalianaAT2G45640.173.026363.1579ananas_comosusAco019520.1.mrna160.326152.1739
AT2G45640arabidopsis_thalianaAT2G45640.175.657965.7895ananas_comosusAco025588.1.mrna175.163465.3595
AT2G45640arabidopsis_thalianaAT2G45640.195.394788.1579arabidopsis_lyratascaffold_403510.196.026588.7417
AT2G45640arabidopsis_thalianaAT2G45640.182.236873.6842quercus_lobataQL08p051220:mrna82.781574.1722
AT2G45640arabidopsis_thalianaAT2G45640.144.736840.1316capsicum_annuumPHT8739767.326760.396
AT2G45640arabidopsis_thalianaAT2G45640.179.605370.3947capsicum_annuumPHT8171477.070168.1529
AT2G45640arabidopsis_thalianaAT2G45640.182.236871.0526lupinus_angustifoliusOIW2191375.757665.4545
AT2G45640arabidopsis_thalianaAT2G45640.192.105385.5263eutrema_salsugineumESQ3919592.715286.0927
AT2G45640arabidopsis_thalianaAT2G45640.194.736888.1579arabidopsis_hallerig09778.t195.364288.7417
AT2G45640arabidopsis_thalianaAT2G45640.182.894772.3684cajanus_cajanC.cajan_20590.t83.443772.8477
AT2G45640arabidopsis_thalianaAT2G45640.181.578971.7105solanum_tuberosumPGSC0003DMT40003560879.487269.8718
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737setaria_viridisTKW3832376.973764.4737
AT2G45640arabidopsis_thalianaAT2G45640.178.289567.1053oryza_nivaraONIVA02G01600.178.289567.1053
AT2G45640arabidopsis_thalianaAT2G45640.179.605367.7632ipomoea_trilobaitb11g00640.t162.371153.0928
AT2G45640arabidopsis_thalianaAT2G45640.175.657962.5oryza_glumipatulaOGLUM02G01560.162.162251.3514
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737zea_maysZm00001eb230470_P00476.973764.4737
AT2G45640arabidopsis_thalianaAT2G45640.17559.8684zea_maysZm00001eb208420_P00265.142952
AT2G45640arabidopsis_thalianaAT2G45640.151.973741.4474zea_maysZm00001eb230390_P00129.36823.4201
AT2G45640arabidopsis_thalianaAT2G45640.179.605369.7368sesamum_indicumSIN_1011566.t77.070167.5159
AT2G45640arabidopsis_thalianaAT2G45640.169.736856.5789chara_brauniiGBG6957184.12768.254
AT2G45640arabidopsis_thalianaAT2G45640.158.552641.4474ciona_savignyiENSCSAVP0000000526557.051340.3846
AT2G45640arabidopsis_thalianaAT2G45640.169.078957.8947brassica_junceacds.BjuA03g36650S82.031268.75
AT2G45640arabidopsis_thalianaAT2G45640.194.078986.8421brassica_junceacds.BjuB06g53660S94.70287.4172
AT2G45640arabidopsis_thalianaAT2G45640.194.736888.1579brassica_junceacds.BjuA05g04750S94.117687.5817
AT2G45640arabidopsis_thalianaAT2G45640.178.289565.7895oryza_brachyanthaOB02G11570.178.289565.7895
AT2G45640arabidopsis_thalianaAT2G45640.138.815831.5789glycine_maxKRH4830681.944466.6667
AT2G45640arabidopsis_thalianaAT2G45640.182.236871.7105glycine_maxKRH6519782.781572.1854
AT2G45640arabidopsis_thalianaAT2G45640.184.868473.0263corymbia_citriodoracds-KAF8028432.181.645670.2532
AT2G45640arabidopsis_thalianaAT2G45640.177.631662.5aegilops_tauschiiAET6Gv20167400.178.666763.3333
AT2G45640arabidopsis_thalianaAT2G45640.177.631662.5triticum_urartuTuG1812G0600000699.01.T0265.921853.0726
AT2G45640arabidopsis_thalianaAT2G45640.136.842132.8947triticum_urartuTuG1812G0700003488.01.T0135.668831.8471
AT2G45640arabidopsis_thalianaAT2G45640.175.657962.5oryza_longistaminataKN539291.1_FGP01162.162251.3514
AT2G45640arabidopsis_thalianaAT2G45640.180.921171.7105fraxinus_excelsiorFRAEX38873_v2_000054410.1.cds78.343969.4268
AT2G45640arabidopsis_thalianaAT2G45640.17563.1579avena_sativa_sangAVESA.00010b.r2.6CG1119840.1.CDS7664
AT2G45640arabidopsis_thalianaAT2G45640.163.157953.2895avena_sativa_sangAVESA.00010b.r2.2DG0390580.1.CDS76.190564.2857
AT2G45640arabidopsis_thalianaAT2G45640.177.631666.4474musa_acuminataMa03_p12300.177.631666.4474
AT2G45640arabidopsis_thalianaAT2G45640.178.289567.1053oryza_glaberrimaORGLA02G0015600.178.289567.1053
AT2G45640arabidopsis_thalianaAT2G45640.176.973762.5hordeum_vulgareHORVU.MOREX.r3.6HG0549040.17863.3333
AT2G45640arabidopsis_thalianaAT2G45640.177.631662.5triticum_turgidumTRITD6Av1G015780.178.666763.3333
AT2G45640arabidopsis_thalianaAT2G45640.176.973761.1842triticum_turgidumTRITD6Bv1G022530.17862
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737panicum_halliiPUZ7379176.973764.4737
AT2G45640arabidopsis_thalianaAT2G45640.176.973763.8158echinochloa_crusgalliscaffold48.556.cds76.973763.8158
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737echinochloa_crusgalliscaffold200.21.cds77.483464.9007
AT2G45640arabidopsis_thalianaAT2G45640.175.657964.4737echinochloa_crusgalliscaffold98.95.cds25.669621.875
AT2G45640arabidopsis_thalianaAT2G45640.178.947470.3947actinidia_chinensisPSS2419875.949467.7215
AT2G45640arabidopsis_thalianaAT2G45640.178.947470.3947actinidia_chinensisPSS1398975.949467.7215
AT2G45640arabidopsis_thalianaAT2G45640.182.236874.3421citrus_clementinaESR5844280.128272.4359
AT2G45640arabidopsis_thalianaAT2G45640.178.289567.1053oryza_indicaBGIOSGA007222-PA78.289567.1053
AT2G45640arabidopsis_thalianaAT2G45640.171.710559.2105selaginella_moellendorffiiEFJ1554473.648760.8108
AT2G45640arabidopsis_thalianaAT2G45640.172.368459.8684selaginella_moellendorffiiEFJ1126474.324361.4865
AT2G45640arabidopsis_thalianaAT2G45640.178.289567.1053oryza_sativaOs02t0122000-0178.289567.1053
AT2G45640arabidopsis_thalianaAT2G45640.162.545.3947homo_sapiensENSP0000037197355.232640.1163
AT2G45640arabidopsis_thalianaAT2G45640.176.973761.1842triticum_aestivumTraesCS6B02G090300.176.973761.1842
AT2G45640arabidopsis_thalianaAT2G45640.177.631662.5triticum_aestivumTraesCSU02G117100.178.666763.3333
AT2G45640arabidopsis_thalianaAT2G45640.177.631662.5triticum_aestivumTraesCS6A02G067100.178.666763.3333
AT2G45640arabidopsis_thalianaAT2G45640.178.289567.1053oryza_rufipogonORUFI02G01680.178.289567.1053
AT2G45640arabidopsis_thalianaAT2G45640.175.657960.5263secale_cerealeSECCEUnv1G0528170.178.231362.585
AT2G45640arabidopsis_thalianaAT2G45640.182.894774.3421gossypium_raimondiiKJB4116978.260970.1863
AT2G45640arabidopsis_thalianaAT2G45640.179.605371.0526helianthus_annuusmRNA:HanXRQr2_Chr04g018442176.582368.3544
AT2G45640arabidopsis_thalianaAT2G45640.179.605371.7105helianthus_annuusmRNA:HanXRQr2_Chr06g024511176.582368.9873
AT2G45640arabidopsis_thalianaAT2G45640.177.631666.4474oryza_punctataOPUNC02G01160.177.631666.4474
AT2G45640arabidopsis_thalianaAT2G45640.175.657964.4737eragrostis_tefEt_1A_007953.CDS76.158964.9007
AT2G45640arabidopsis_thalianaAT2G45640.175.657964.4737eragrostis_tefEt_1B_012751.CDS76.158964.9007
AT2G45640arabidopsis_thalianaAT2G45640.182.236869.7368medicago_truncatulaKEH1901482.781570.1987
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737saccharum_spontaneumSspon.04G0019980-3C-mRNA-1:cds76.973764.4737
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737sorghum_bicolorEES0619476.973764.4737
AT2G45640arabidopsis_thalianaAT2G45640.176.973760.5263triticum_dicoccoidesTRIDC6BG012230.166.477352.2727
AT2G45640arabidopsis_thalianaAT2G45640.139.473733.5526triticum_dicoccoidesTRIDC3AG066360.171.428660.7143
AT2G45640arabidopsis_thalianaAT2G45640.139.473734.2105triticum_dicoccoidesTRIDC7AG044510.265.217456.5217
AT2G45640arabidopsis_thalianaAT2G45640.177.631662.5triticum_dicoccoidesTRIDC6AG008180.273.291959.0062
AT2G45640arabidopsis_thalianaAT2G45640.139.473733.5526triticum_dicoccoidesTRIDC3AG021010.171.428660.7143
AT2G45640arabidopsis_thalianaAT2G45640.178.947469.7368coffea_canephoraCDP0891773.619665.0307
AT2G45640arabidopsis_thalianaAT2G45640.178.289567.7632manihot_esculentaOAY6238180.952470.068
AT2G45640arabidopsis_thalianaAT2G45640.178.289569.0789manihot_esculentaOAY4926580.952471.4286
AT2G45640arabidopsis_thalianaAT2G45640.182.236871.7105kalanchoe_fedtschenkoiKaladp0101s0096.1.v1.181.699371.2418
AT2G45640arabidopsis_thalianaAT2G45640.180.921171.0526kalanchoe_fedtschenkoiKaladp0050s0205.1.v1.180.392270.5882
AT2G45640arabidopsis_thalianaAT2G45640.168.421157.8947trifolium_pratenseTp57577_TGAC_v2_mRNA151835244
AT2G45640arabidopsis_thalianaAT2G45640.194.736888.1579brassica_rapa_ro18A05p006910.1_BraROA.193.506587.013
AT2G45640arabidopsis_thalianaAT2G45640.167.763257.2368brassica_rapa_ro18A03p026050.1_BraROA.181.74669.0476
AT2G45640arabidopsis_thalianaAT2G45640.185.526373.0263eucalyptus_grandisKCW7288953.71945.8678
AT2G45640arabidopsis_thalianaAT2G45640.178.947467.7632dioscorea_rotundataDRNTG_32895.178.431467.3203
AT2G45640arabidopsis_thalianaAT2G45640.178.947466.4474prunus_persicaONI0688271.428660.119
AT2G45640arabidopsis_thalianaAT2G45640.17563.1579avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0001436.152.534644.2396
AT2G45640arabidopsis_thalianaAT2G45640.175.657963.1579avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0000642.176.666764
AT2G45640arabidopsis_thalianaAT2G45640.175.657963.1579avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0002513.155.023945.933
AT2G45640arabidopsis_thalianaAT2G45640.176.315861.8421chenopodium_quinoaAUR62017329-RA:cds72.049758.3851
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737digitaria_exilisDexi1A01G0001860.1:cds77.483464.9007
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737digitaria_exilisDexi1B01G0001820.1:cds77.483464.9007
AT2G45640arabidopsis_thalianaAT2G45640.178.289567.1053oryza_barthiiOBART02G01700.178.289567.1053
AT2G45640arabidopsis_thalianaAT2G45640.194.736888.1579brassica_oleraceaBo4g024830.194.736888.1579
AT2G45640arabidopsis_thalianaAT2G45640.144.736836.8421brassica_oleraceaBo3g038850.18570
AT2G45640arabidopsis_thalianaAT2G45640.178.947466.4474prunus_dulcisVVA3984071.428660.119
AT2G45640arabidopsis_thalianaAT2G45640.163.815853.9474corylus_avellanaCav03g19030.t172.388161.194
AT2G45640arabidopsis_thalianaAT2G45640.17559.8684leersia_perrieriLPERR02G01500.174.02659.0909
AT2G45640arabidopsis_thalianaAT2G45640.181.578971.0526nicotiana_attenuataOIS9571379.487269.2308
AT2G45640arabidopsis_thalianaAT2G45640.180.263271.0526olea_europaeaOE9A117825C177.70768.7898
AT2G45640arabidopsis_thalianaAT2G45640.180.263271.7105olea_europaeaOE9A046431C177.70769.4268
AT2G45640arabidopsis_thalianaAT2G45640.179.605370.3947olea_europaeaOE9A047133C177.070168.1529
AT2G45640arabidopsis_thalianaAT2G45640.180.263269.0789pistacia_veracds-EVM0007449.178.709767.7419
AT2G45640arabidopsis_thalianaAT2G45640.155.921137.5drosophila_melanogasterFBpp031250556.666738
AT2G45640arabidopsis_thalianaAT2G45640.194.736888.1579brassica_napusCDY1891394.736888.1579
AT2G45640arabidopsis_thalianaAT2G45640.144.736836.8421brassica_napusCDY606848570
AT2G45640arabidopsis_thalianaAT2G45640.194.736888.1579brassica_napusCDX7475394.117687.5817
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737corchorus_capsularisOMO8967675.483963.2258
AT2G45640arabidopsis_thalianaAT2G45640.177.631666.4474oryza_meridionalisOMERI02G01000.253.153245.4955
AT2G45640arabidopsis_thalianaAT2G45640.195.394790.7895camelina_sativaCsa04g063670.196.026591.3907
AT2G45640arabidopsis_thalianaAT2G45640.195.394790.1316camelina_sativaCsa06g052040.196.026590.7285
AT2G45640arabidopsis_thalianaAT2G45640.195.394790.7895camelina_sativaCsa05g003650.196.026591.3907
AT2G45640arabidopsis_thalianaAT2G45640.178.289565.7895malus_domestica_goldenmRNA:MD04G006320070.833359.5238
AT2G45640arabidopsis_thalianaAT2G45640.167.763257.8947daucus_carotaKZN0605271.034560.6897
AT2G45640arabidopsis_thalianaAT2G45640.179.605368.4211rosa_chinensisPRQ1788970.348860.4651
AT2G45640arabidopsis_thalianaAT2G45640.178.289567.7632juglans_regiacds.Jr09_11890_p168.786159.5376
AT2G45640arabidopsis_thalianaAT2G45640.182.236873.0263nymphaea_colorataNC2G0036800.1:cds78.616469.8113
AT2G45640arabidopsis_thalianaAT2G45640.176.973764.4737setaria_italicaKQL2897976.973764.4737
AT2G45640arabidopsis_thalianaAT2G45640.175.657959.8684physcomitrium_patensPp3c14_24540V3.172.784857.5949
AT2G45640arabidopsis_thalianaAT2G45640.173.684267.1053cynara_cardunculusKVH8916076.190569.3878

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0005730located_in nucleolus1HDAArabidopsis_thaliana(3702)Component
GO:0005829located_in cytosol1HDAArabidopsis_thaliana(3702)Component
GO:0009651acts_upstream_of_or_within response to salt stress1IMPArabidopsis_thaliana(3702)Process
GO:0009737acts_upstream_of_or_within response to abscisic acid1IEPArabidopsis_thaliana(3702)Process

Expression