Description

Ensembl ID AT2G40650 Gene ID 818660 Accession -
Symbol AT2G40650 Alias - Full Name PRP38 family protein
Status Confidence Length 2513 bases Strand Minus strand
Position 2 : 16963286 - 16965798 RNA binding domain PRP38
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT2G40650 PRP38 PF03371 2.1e-59 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT2G40650-201 AT2G40650 1572 355aa AT2G40650

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G40650arabidopsis_thalianaAT5G37370.134.351121.374arabidopsis_thalianaAT2G40650.138.028223.662

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G40650arabidopsis_thalianaAT2G40650.123.098615.7746chondrus_crispusCDF3532740.79627.8607
AT2G40650arabidopsis_thalianaAT2G40650.132.394422.2535chondrus_crispusCDF3531961.82842.4731
AT2G40650arabidopsis_thalianaAT2G40650.123.098615.7746chondrus_crispusCDF3532340.79627.8607
AT2G40650arabidopsis_thalianaAT2G40650.174.366256.6197chlamydomonas_reinhardtiiPNW7494256.53143.0407
AT2G40650arabidopsis_thalianaAT2G40650.179.154967.3239marchantia_polymorphaPTQ2958666.587756.6351
AT2G40650arabidopsis_thalianaAT2G40650.186.197277.7465papaver_somniferumRZC5318179.687571.875
AT2G40650arabidopsis_thalianaAT2G40650.168.732461.4085cannabis_sativa_femalecds.evm.model.06.190073.71665.861
AT2G40650arabidopsis_thalianaAT2G40650.18070.7042ficus_caricaFCD_00008437-RA:cds73.958365.3646
AT2G40650arabidopsis_thalianaAT2G40650.186.197275.493theobroma_cacaoEOY2604680.526370.5263
AT2G40650arabidopsis_thalianaAT2G40650.185.915576.338beta_vulgarisKMT1427180.687871.6931
AT2G40650arabidopsis_thalianaAT2G40650.186.760677.4648cucumis_meloMELO3C004206.2.177.581969.2695
AT2G40650arabidopsis_thalianaAT2G40650.161.971855.2113cucumis_sativusKGN6097586.274576.8627
AT2G40650arabidopsis_thalianaAT2G40650.188.732477.7465populus_trichocarpaPotri.013G012000.1.v4.18473.6
AT2G40650arabidopsis_thalianaAT2G40650.147.887341.1268solanum_lycopersicumSolyc01g100060.3.185.427173.3668
AT2G40650arabidopsis_thalianaAT2G40650.155.49341.6901caenorhabditis_elegansD1054.14.161.562546.25
AT2G40650arabidopsis_thalianaAT2G40650.181.408470.7042lactuca_sativacds-PLY63971.176.861766.7553
AT2G40650arabidopsis_thalianaAT2G40650.160.563447.3239ostreococcus_lucimarinusABO9386358.743245.9016
AT2G40650arabidopsis_thalianaAT2G40650.183.380371.831eragrostis_curvulaTVU1072175.510265.051
AT2G40650arabidopsis_thalianaAT2G40650.186.478976.6197citrullus_lanatusCla97C02G040950.176.178767.4938
AT2G40650arabidopsis_thalianaAT2G40650.178.309968.169vigna_radiataVradi08g12190.178.977368.75
AT2G40650arabidopsis_thalianaAT2G40650.116.619714.0845amborella_trichopodaERM9674784.285771.4286
AT2G40650arabidopsis_thalianaAT2G40650.116.619714.0845amborella_trichopodaERM9753484.285771.4286
AT2G40650arabidopsis_thalianaAT2G40650.187.323976.9014vigna_unguiculataVigun07g142400.1.v1.279.896970.3608
AT2G40650arabidopsis_thalianaAT2G40650.126.760623.662prunus_aviumPav_sc0001508.1_g100.1.br:CDS:197.938186.5979
AT2G40650arabidopsis_thalianaAT2G40650.127.042324.2254prunus_aviumPav_sc0004194.1_g010.1.mk:CDS:198.969188.6598
AT2G40650arabidopsis_thalianaAT2G40650.185.915574.6479phaseolus_vulgarisESW1697380.263269.7368
AT2G40650arabidopsis_thalianaAT2G40650.182.535272.9577asparagus_officinalisONK6338177.105368.1579
AT2G40650arabidopsis_thalianaAT2G40650.186.760677.1831pisum_sativumPsat6g151720.1.cds78.974470.2564
AT2G40650arabidopsis_thalianaAT2G40650.182.253570.9859brachypodium_distachyonKQJ8687374.489864.2857
AT2G40650arabidopsis_thalianaAT2G40650.183.380370.9859ananas_comosusAco001830.1.mrna177.486965.9686
AT2G40650arabidopsis_thalianaAT2G40650.198.591696.338arabidopsis_lyratafgenesh2_kg.4__2184__AT2G40650.198.591696.338
AT2G40650arabidopsis_thalianaAT2G40650.188.732480quercus_lobataQL03p018920:mrna79.145771.3568
AT2G40650arabidopsis_thalianaAT2G40650.187.323976.6197capsicum_annuumPHT6247079.896970.1031
AT2G40650arabidopsis_thalianaAT2G40650.187.605676.9014lupinus_angustifoliusOIW0710080.989671.0938
AT2G40650arabidopsis_thalianaAT2G40650.198.591696.0563arabidopsis_hallerig12651.t187.719385.4637
AT2G40650arabidopsis_thalianaAT2G40650.187.605676.9014cajanus_cajanC.cajan_06861.t79.539669.821
AT2G40650arabidopsis_thalianaAT2G40650.186.478975.7747solanum_tuberosumPGSC0003DMT40006360481.432471.3528
AT2G40650arabidopsis_thalianaAT2G40650.182.816970.9859setaria_viridisTKW3840275.773264.9485
AT2G40650arabidopsis_thalianaAT2G40650.163.098652.1127setaria_viridisTKW3206171.337658.9172
AT2G40650arabidopsis_thalianaAT2G40650.166.760654.6479oryza_nivaraONIVA09G00120.262.368451.0526
AT2G40650arabidopsis_thalianaAT2G40650.186.478975.7747ipomoea_trilobaitb07g00530.t178.717968.9744
AT2G40650arabidopsis_thalianaAT2G40650.163.66251.5493oryza_glumipatulaOGLUM09G00180.161.580449.8638
AT2G40650arabidopsis_thalianaAT2G40650.182.253570.7042zea_maysZm00001eb095730_P00175.064364.5244
AT2G40650arabidopsis_thalianaAT2G40650.181.971870.7042sesamum_indicumSIN_1025876.t75.979165.5352
AT2G40650arabidopsis_thalianaAT2G40650.189.577577.1831sesamum_indicumSIN_1022730.t81.958870.6186
AT2G40650arabidopsis_thalianaAT2G40650.181.690169.2958lolium_perennecds.KYUSt_chr5.1725074.168862.9156
AT2G40650arabidopsis_thalianaAT2G40650.175.49362.2535chara_brauniiGBG7856854.91845.2869
AT2G40650arabidopsis_thalianaAT2G40650.196.619793.2394arabis_alpinaKFK3693696.348392.9775
AT2G40650arabidopsis_thalianaAT2G40650.155.211340ciona_savignyiENSCSAVP0000001628064.900747.0199
AT2G40650arabidopsis_thalianaAT2G40650.196.056392.3944brassica_junceacds.BjuA03g38580S97.428693.7143
AT2G40650arabidopsis_thalianaAT2G40650.195.211392.1127brassica_junceacds.BjuB08g40670S97.126493.9655
AT2G40650arabidopsis_thalianaAT2G40650.183.098672.3944oryza_brachyanthaOB09G10100.175.64165.8974
AT2G40650arabidopsis_thalianaAT2G40650.187.323976.6197glycine_maxKRG9293480.939971.0183
AT2G40650arabidopsis_thalianaAT2G40650.187.605676.0563glycine_maxKRH3386081.627370.8661
AT2G40650arabidopsis_thalianaAT2G40650.188.732480.2817corymbia_citriodoracds-KAF8015964.177.777870.3704
AT2G40650arabidopsis_thalianaAT2G40650.180.845170.1408aegilops_tauschiiAET5Gv20402600.172.292262.7204
AT2G40650arabidopsis_thalianaAT2G40650.166.478954.3662oryza_longistaminataKN539475.1_FGP00560.050949.1094
AT2G40650arabidopsis_thalianaAT2G40650.182.253570.4225fraxinus_excelsiorFRAEX38873_v2_000067920.1.cds77.866766.6667
AT2G40650arabidopsis_thalianaAT2G40650.175.774765.3521fraxinus_excelsiorFRAEX38873_v2_000041620.1.cds80.298569.2537
AT2G40650arabidopsis_thalianaAT2G40650.186.760675.2113musa_acuminataMa03_p20950.178.371567.9389
AT2G40650arabidopsis_thalianaAT2G40650.181.971870.4225oryza_glaberrimaORGLA09G0001500.174.234763.7755
AT2G40650arabidopsis_thalianaAT2G40650.182.816970.7042hordeum_vulgareHORVU.MOREX.r3.5HG0467490.174.055463.2242
AT2G40650arabidopsis_thalianaAT2G40650.181.690170.4225triticum_turgidumTRITD5Bv1G098300.273.791463.6132
AT2G40650arabidopsis_thalianaAT2G40650.181.690170.1408triticum_turgidumTRITD5Av1G118410.372.319262.0948
AT2G40650arabidopsis_thalianaAT2G40650.137.746528.4507triticum_turgidumTRITD1Bv1G165640.162.910847.4178
AT2G40650arabidopsis_thalianaAT2G40650.184.225372.9577panicum_halliiPUZ6972776.863866.581
AT2G40650arabidopsis_thalianaAT2G40650.183.66272.1127echinochloa_crusgalliscaffold102.116.cds75.572565.1399
AT2G40650arabidopsis_thalianaAT2G40650.183.943772.3944echinochloa_crusgalliscaffold121.237.cds75.44365.0633
AT2G40650arabidopsis_thalianaAT2G40650.183.943772.3944echinochloa_crusgalliscaffold3.256.cds75.82765.3944
AT2G40650arabidopsis_thalianaAT2G40650.150.140842.8169actinidia_chinensisPSS0305088.557275.6219
AT2G40650arabidopsis_thalianaAT2G40650.186.197276.9014citrus_clementinaESR4672580.104771.466
AT2G40650arabidopsis_thalianaAT2G40650.182.253570.7042oryza_indicaBGIOSGA030250-PA74.489864.0306
AT2G40650arabidopsis_thalianaAT2G40650.141.690136.338selaginella_moellendorffiiEFJ0947088.095276.7857
AT2G40650arabidopsis_thalianaAT2G40650.154.366245.9155selaginella_moellendorffiiEFJ3588765.870355.6314
AT2G40650arabidopsis_thalianaAT2G40650.182.253570.7042oryza_sativaOs09t0103600-0174.489864.0306
AT2G40650arabidopsis_thalianaAT2G40650.155.211344.2254homo_sapiensENSP0000025718162.820550.3205
AT2G40650arabidopsis_thalianaAT2G40650.180.845170.1408triticum_aestivumTraesCS5D02G164200.173.214363.5204
AT2G40650arabidopsis_thalianaAT2G40650.181.690170.1408triticum_aestivumTraesCS5A02G159100.173.604163.198
AT2G40650arabidopsis_thalianaAT2G40650.135.49327.3239triticum_aestivumTraesCS1D02G290400.1.cds157.798244.4954
AT2G40650arabidopsis_thalianaAT2G40650.181.690170.4225triticum_aestivumTraesCS5B02G156900.173.791463.6132
AT2G40650arabidopsis_thalianaAT2G40650.137.746528.4507triticum_aestivumTraesCS1B02G301300.1.cds162.910847.4178
AT2G40650arabidopsis_thalianaAT2G40650.137.183127.8873triticum_aestivumTraesCS1A02G291900.1.cds165.024648.7685
AT2G40650arabidopsis_thalianaAT2G40650.163.66251.5493oryza_rufipogonORUFI09G00200.161.580449.8638
AT2G40650arabidopsis_thalianaAT2G40650.182.253570.7042secale_cerealeSECCE5Rv1G0320750.174.871864.359
AT2G40650arabidopsis_thalianaAT2G40650.185.070474.3662gossypium_raimondiiKJB7141680.106170.0265
AT2G40650arabidopsis_thalianaAT2G40650.185.352173.8028helianthus_annuusmRNA:HanXRQr2_Chr11g048949179.319468.5864
AT2G40650arabidopsis_thalianaAT2G40650.181.690170.1408oryza_punctataOPUNC09G00120.175.324764.6753
AT2G40650arabidopsis_thalianaAT2G40650.182.816971.831eragrostis_tefEt_2B_019756.CDS59.877851.9348
AT2G40650arabidopsis_thalianaAT2G40650.162.816953.5211eragrostis_tefEt_2A_015636.CDS77.97266.4336
AT2G40650arabidopsis_thalianaAT2G40650.186.197276.9014medicago_truncatulaAES6143979.480570.9091
AT2G40650arabidopsis_thalianaAT2G40650.183.66272.3944sorghum_bicolorEER9854775.765365.5612
AT2G40650arabidopsis_thalianaAT2G40650.181.690170.4225triticum_dicoccoidesTRIDC5BG027530.273.417763.2911
AT2G40650arabidopsis_thalianaAT2G40650.181.690170.1408triticum_dicoccoidesTRIDC5AG026320.173.604163.198
AT2G40650arabidopsis_thalianaAT2G40650.189.295877.4648coffea_canephoraCDP1722479.2568.75
AT2G40650arabidopsis_thalianaAT2G40650.188.16978.8732manihot_esculentaOAY2230082.804274.0741
AT2G40650arabidopsis_thalianaAT2G40650.182.535272.1127kalanchoe_fedtschenkoiKaladp0057s0134.1.v1.178.133368.2667
AT2G40650arabidopsis_thalianaAT2G40650.168.732461.4085trifolium_pratenseTp57577_TGAC_v2_mRNA1834872.189364.497
AT2G40650arabidopsis_thalianaAT2G40650.196.33891.831brassica_rapa_ro18A03p023550.1_BraROA.197.159192.6136
AT2G40650arabidopsis_thalianaAT2G40650.189.014179.7183eucalyptus_grandisKCW6052972.477164.9083
AT2G40650arabidopsis_thalianaAT2G40650.177.183166.1972dioscorea_rotundataDRNTG_12602.171.354261.1979
AT2G40650arabidopsis_thalianaAT2G40650.177.464867.3239dioscorea_rotundataDRNTG_12463.175.757665.8402
AT2G40650arabidopsis_thalianaAT2G40650.158.873248.169prunus_persicaONI0435870.370457.5758
AT2G40650arabidopsis_thalianaAT2G40650.185.633876.6197prunus_persicaONI3019671.361563.8498
AT2G40650arabidopsis_thalianaAT2G40650.182.253570.4225avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0001585.474.489863.7755
AT2G40650arabidopsis_thalianaAT2G40650.182.253570.1408avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0002014.17362.25
AT2G40650arabidopsis_thalianaAT2G40650.182.253569.8592avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0001573.474.871863.5897
AT2G40650arabidopsis_thalianaAT2G40650.162.535256.0563chenopodium_quinoaAUR62000721-RA:cds79.856171.5827
AT2G40650arabidopsis_thalianaAT2G40650.183.943772.6761digitaria_exilisDexi2B01G0012010.1:cds75.44365.3165
AT2G40650arabidopsis_thalianaAT2G40650.183.66272.3944digitaria_exilisDexi2A01G0012820.1:cds75.189965.0633
AT2G40650arabidopsis_thalianaAT2G40650.166.478954.3662oryza_barthiiOBART09G00170.161.618850.3916
AT2G40650arabidopsis_thalianaAT2G40650.192.957785.3521brassica_oleraceaBo4g190350.194.555986.8195
AT2G40650arabidopsis_thalianaAT2G40650.195.774791.2676brassica_oleraceaBo3g035100.197.142992.5714
AT2G40650arabidopsis_thalianaAT2G40650.166.197257.4648prunus_dulcisVVA2635077.557867.3267
AT2G40650arabidopsis_thalianaAT2G40650.185.633876.6197prunus_dulcisVVA1323280.636672.1485
AT2G40650arabidopsis_thalianaAT2G40650.152.676136.9014galdieria_sulphurariaEME2680367.266247.1223
AT2G40650arabidopsis_thalianaAT2G40650.187.605678.0282corylus_avellanaCav02g05510.t148.746143.4169
AT2G40650arabidopsis_thalianaAT2G40650.181.971870.9859leersia_perrieriLPERR09G00960.27564.9485
AT2G40650arabidopsis_thalianaAT2G40650.185.915574.0845nicotiana_attenuataOIS9985979.842968.8482
AT2G40650arabidopsis_thalianaAT2G40650.186.478973.8028olea_europaeaOE9A053395C181.432469.496
AT2G40650arabidopsis_thalianaAT2G40650.158.591543.3803drosophila_melanogasterFBpp008766363.030346.6667
AT2G40650arabidopsis_thalianaAT2G40650.189.859283.662brassica_napusCDX9316477.615672.2628
AT2G40650arabidopsis_thalianaAT2G40650.196.056391.831brassica_napusCDY6915697.428693.1429
AT2G40650arabidopsis_thalianaAT2G40650.195.49390.9859brassica_napusCDY2246896.857192.2857
AT2G40650arabidopsis_thalianaAT2G40650.173.521165.0704corchorus_capsularisOMO5535482.334472.8707
AT2G40650arabidopsis_thalianaAT2G40650.166.760654.6479oryza_meridionalisOMERI09G00190.137.61930.7937
AT2G40650arabidopsis_thalianaAT2G40650.197.464894.0845camelina_sativaCsa05g012050.195.844992.5208
AT2G40650arabidopsis_thalianaAT2G40650.196.33892.9577camelina_sativaCsa06g045080.195.530792.1788
AT2G40650arabidopsis_thalianaAT2G40650.193.802890.7042camelina_sativaCsa04g055020.194.602391.4773
AT2G40650arabidopsis_thalianaAT2G40650.186.760677.1831malus_domestica_goldenmRNA:MD12G017520082.352973.262
AT2G40650arabidopsis_thalianaAT2G40650.186.197276.9014malus_domestica_goldenmRNA:MD04G016030080.526371.8421
AT2G40650arabidopsis_thalianaAT2G40650.186.760673.5211daucus_carotaKZN1184778.571466.5816
AT2G40650arabidopsis_thalianaAT2G40650.187.887377.4648rosa_chinensisPRQ4233680.620271.0594
AT2G40650arabidopsis_thalianaAT2G40650.189.014179.1549juglans_regiacds.Jr11_03730_p178.60769.9005
AT2G40650arabidopsis_thalianaAT2G40650.178.591669.5775nymphaea_colorataNC10G0043770.1:cds73.809565.3439
AT2G40650arabidopsis_thalianaAT2G40650.187.042376.6197vigna_angularisKOM3548979.639270.1031
AT2G40650arabidopsis_thalianaAT2G40650.162.816951.831setaria_italicaKQL2368571.019158.5987
AT2G40650arabidopsis_thalianaAT2G40650.183.380371.2676setaria_italicaKQL2903474.371963.5678
AT2G40650arabidopsis_thalianaAT2G40650.181.408469.0141physcomitrium_patensPp3c1_35390V3.366.284456.1927
AT2G40650arabidopsis_thalianaAT2G40650.166.478956.338vitis_viniferaVitvi00g04383_P00166.666756.4972
AT2G40650arabidopsis_thalianaAT2G40650.187.042372.9577cynara_cardunculusKVI1100480.678867.624

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003674enables molecular_function1NDArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0010468acts_upstream_of_or_within regulation of gene expression1IEAArabidopsis_thaliana(3702)Process
GO:0018205acts_upstream_of_or_within peptidyl-lysine modification1IEAArabidopsis_thaliana(3702)Process
GO:0051252acts_upstream_of_or_within regulation of RNA metabolic process1IEAArabidopsis_thaliana(3702)Process
GO:2000026acts_upstream_of_or_within regulation of multicellular organismal development1IEAArabidopsis_thaliana(3702)Process

Expression