RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AT2G39440	Gene ID	818529	Accession	-
Symbol	AT2G39440	Alias	-	Full Name	ribonuclease H2 subunit C-like protein
Status	Confidence	Length	1799 bases	Strand	Minus strand
Position	2 : 16467830 - 16469628	RNA binding domain	RNase_H2_suC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
AT2G39440	RNase_H2_suC	PF08615	6.5e-29	1
AT2G39440	RNase_H2_suC	PF08615	6.5e-29	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AT2G39440-201	AT2G39440	1045	162aa	AT2G39440

Gene Model

Click here to download AT2G39440's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AT2G39440's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AT2G39440	arabidopsis_thaliana	AT5G26910.4	7.26846	2.69637	arabidopsis_thaliana	AT2G39440.2	38.2716	14.1975
AT2G39440	arabidopsis_thaliana	AT3G05750.1	7.61548	3.62047	arabidopsis_thaliana	AT2G39440.2	37.6543	17.9012
AT2G39440	arabidopsis_thaliana	AT3G58650.1	7.07317	3.29268	arabidopsis_thaliana	AT2G39440.2	35.8025	16.6667
AT2G39440	arabidopsis_thaliana	AT5G43880.3	6.33971	2.51196	arabidopsis_thaliana	AT2G39440.2	32.716	12.963
AT2G39440	arabidopsis_thaliana	AT2G20240.1	7.29313	2.38429	arabidopsis_thaliana	AT2G39440.2	32.0988	10.4938
AT2G39440	arabidopsis_thaliana	AT1G63670.3	5.66038	2.75762	arabidopsis_thaliana	AT2G39440.2	24.0741	11.7284
AT2G39440	arabidopsis_thaliana	AT4G28760.2	5.95238	2.1645	arabidopsis_thaliana	AT2G39440.2	33.9506	12.3457
AT2G39440	arabidopsis_thaliana	AT3G53540.2	4.39791	1.98953	arabidopsis_thaliana	AT2G39440.2	25.9259	11.7284
AT2G39440	arabidopsis_thaliana	AT1G67040.2	6.64251	2.89855	arabidopsis_thaliana	AT2G39440.2	33.9506	14.8148
AT2G39440	arabidopsis_thaliana	AT2G45900.1	3.75	1.66667	arabidopsis_thaliana	AT2G39440.2	16.6667	7.40741
AT2G39440	arabidopsis_thaliana	AT3G61380.1	3.89972	1.94986	arabidopsis_thaliana	AT2G39440.2	17.284	8.64198

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AT2G39440	arabidopsis_thaliana	AT2G39440.2	61.7284	48.7654	papaver_somniferum	RZC43726	54.9451	43.4066
AT2G39440	arabidopsis_thaliana	AT2G39440.2	62.3457	48.1481	papaver_somniferum	RZC67761	55.4945	42.8571
AT2G39440	arabidopsis_thaliana	AT2G39440.2	67.9012	55.5556	cannabis_sativa_female	cds.evm.model.05.2115	65.0888	53.2544
AT2G39440	arabidopsis_thaliana	AT2G39440.2	58.0247	43.2099	ficus_carica	FCD_00037008-RA:cds	58.75	43.75
AT2G39440	arabidopsis_thaliana	AT2G39440.2	58.0247	42.5926	ficus_carica	FCD_00027248-RA:cds	58.75	43.125
AT2G39440	arabidopsis_thaliana	AT2G39440.2	67.284	54.9383	theobroma_cacao	EOY27532	66.4634	54.2683
AT2G39440	arabidopsis_thaliana	AT2G39440.2	61.1111	45.0617	beta_vulgaris	KMT17102	56.5714	41.7143
AT2G39440	arabidopsis_thaliana	AT2G39440.2	70.3704	54.321	cucumis_melo	MELO3C021769.2.1	67.8571	52.381
AT2G39440	arabidopsis_thaliana	AT2G39440.2	69.7531	53.7037	cucumis_sativus	KGN66902	68.9024	53.0488
AT2G39440	arabidopsis_thaliana	AT2G39440.2	67.284	51.2346	populus_trichocarpa	Potri.012G120220.1.v4.1	64.881	49.4048
AT2G39440	arabidopsis_thaliana	AT2G39440.2	67.284	50.6173	populus_trichocarpa	Potri.012G120100.1.v4.1	65.2695	49.1018
AT2G39440	arabidopsis_thaliana	AT2G39440.2	69.7531	51.8519	solanum_lycopersicum	Solyc02g069070.3.1	68.4848	50.9091
AT2G39440	arabidopsis_thaliana	AT2G39440.2	60.4938	45.679	lactuca_sativa	cds-PLY92550.1	59.0361	44.5783
AT2G39440	arabidopsis_thaliana	AT2G39440.2	55.5556	41.358	eragrostis_curvula	TVU32740	48.6486	36.2162
AT2G39440	arabidopsis_thaliana	AT2G39440.2	69.7531	54.321	citrullus_lanatus	Cla97C01G009530.1	69.7531	54.321
AT2G39440	arabidopsis_thaliana	AT2G39440.2	53.7037	38.2716	vigna_radiata	Vradi07g21590.1	64.9254	46.2687
AT2G39440	arabidopsis_thaliana	AT2G39440.2	51.2346	36.4198	amborella_trichopoda	ERN14809	49.7006	35.3293
AT2G39440	arabidopsis_thaliana	AT2G39440.2	59.8765	41.358	vigna_unguiculata	Vigun03g374500.1.v1.2	52.4324	36.2162
AT2G39440	arabidopsis_thaliana	AT2G39440.2	67.284	48.1481	prunus_avium	Pav_sc0000086.1_g270.1.mk:mrna	64.497	46.1538
AT2G39440	arabidopsis_thaliana	AT2G39440.2	61.1111	44.4444	phaseolus_vulgaris	ESW26851	67.3469	48.9796
AT2G39440	arabidopsis_thaliana	AT2G39440.2	59.2593	43.8272	asparagus_officinalis	ONK65794	56.4706	41.7647
AT2G39440	arabidopsis_thaliana	AT2G39440.2	59.8765	42.5926	pisum_sativum	Psat0s3953g0080.1.cds	64.2384	45.6954
AT2G39440	arabidopsis_thaliana	AT2G39440.2	53.0864	40.1235	brachypodium_distachyon	KQJ93529	54.4304	41.1392
AT2G39440	arabidopsis_thaliana	AT2G39440.2	59.8765	46.9136	quercus_suber	cds-POE75273.1	59.1463	46.3415
AT2G39440	arabidopsis_thaliana	AT2G39440.2	56.1728	40.1235	ananas_comosus	Aco008364.1.mrna1	47.8947	34.2105
AT2G39440	arabidopsis_thaliana	AT2G39440.2	58.0247	45.0617	quercus_lobata	QL11p018076:mrna	58.0247	45.0617
AT2G39440	arabidopsis_thaliana	AT2G39440.2	70.3704	53.7037	capsicum_annuum	PHT62666	69.0909	52.7273
AT2G39440	arabidopsis_thaliana	AT2G39440.2	58.642	44.4444	lupinus_angustifolius	OIV90561	62.5	47.3684
AT2G39440	arabidopsis_thaliana	AT2G39440.2	90.7407	85.1852	eutrema_salsugineum	ESQ52623	91.875	86.25
AT2G39440	arabidopsis_thaliana	AT2G39440.2	86.4198	81.4815	arabidopsis_halleri	g12503.t1	86.4198	81.4815
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.9383	40.1235	cajanus_cajan	C.cajan_26006.t	55.625	40.625
AT2G39440	arabidopsis_thaliana	AT2G39440.2	55.5556	40.1235	setaria_viridis	TKW37804	47.619	34.3915
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	38.8889	oryza_nivara	ONIVA02G05500.1	54.321	38.8889
AT2G39440	arabidopsis_thaliana	AT2G39440.2	66.6667	49.3827	ipomoea_triloba	itb10g17410.t1	67.9245	50.3145
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	38.8889	oryza_glumipatula	OGLUM02G05110.1	54.321	38.8889
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	37.6543	zea_mays	Zm00001eb233030_P002	55	38.125
AT2G39440	arabidopsis_thaliana	AT2G39440.2	51.2346	37.037	lolium_perenne	cds.KYUSt_chr6.25074	46.8927	33.8983
AT2G39440	arabidopsis_thaliana	AT2G39440.2	50	35.1852	chara_braunii	GBG63949	35.0649	24.6753
AT2G39440	arabidopsis_thaliana	AT2G39440.2	86.4198	76.5432	brassica_juncea	cds.BjuA05g05900S	86.4198	76.5432
AT2G39440	arabidopsis_thaliana	AT2G39440.2	50	35.1852	oryza_brachyantha	OB02G14500.1	51.9231	36.5385
AT2G39440	arabidopsis_thaliana	AT2G39440.2	59.8765	45.0617	glycine_max	KRH72347	54.8023	41.2429
AT2G39440	arabidopsis_thaliana	AT2G39440.2	60.4938	48.7654	corymbia_citriodora	cds-KAF8032119.1	58.3333	47.0238
AT2G39440	arabidopsis_thaliana	AT2G39440.2	55.5556	41.9753	triticum_urartu	TuG1812G0600001495.01.T01	56.25	42.5
AT2G39440	arabidopsis_thaliana	AT2G39440.2	62.963	46.9136	fraxinus_excelsior	FRAEX38873_v2_000393450.1.cds	61.8182	46.0606
AT2G39440	arabidopsis_thaliana	AT2G39440.2	53.7037	40.1235	avena_sativa_sang	AVESA.00010b.r2.6CG1111610.1.CDS	55.0633	41.1392
AT2G39440	arabidopsis_thaliana	AT2G39440.2	53.7037	39.5062	avena_sativa_sang	AVESA.00010b.r2.6AG1007180.1.CDS	55.0633	40.5063
AT2G39440	arabidopsis_thaliana	AT2G39440.2	53.7037	39.5062	avena_sativa_sang	AVESA.00010b.r2.2DG0383340.1.CDS	55.0633	40.5063
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.9383	43.2099	musa_acuminata	Ma11_p24020.1	49.7207	39.1061
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	38.8889	oryza_glaberrima	ORGLA02G0048400.1	54.321	38.8889
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.9383	41.358	hordeum_vulgare	HORVU.MOREX.r3.6HG0567530.1	54.6012	41.1043
AT2G39440	arabidopsis_thaliana	AT2G39440.2	50	38.2716	triticum_turgidum	TRITD6Bv1G063050.1	55.4795	42.4658
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.9383	41.358	triticum_turgidum	TRITD6Av1G050450.1	55.625	41.875
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.9383	40.7407	panicum_hallii	PUZ74256	54.6012	40.4908
AT2G39440	arabidopsis_thaliana	AT2G39440.2	55.5556	41.358	echinochloa_crusgalli	scaffold48.271.cds	54.878	40.8537
AT2G39440	arabidopsis_thaliana	AT2G39440.2	56.1728	40.1235	echinochloa_crusgalli	scaffold1.1365.cds	55.4878	39.6341
AT2G39440	arabidopsis_thaliana	AT2G39440.2	56.1728	40.7407	echinochloa_crusgalli	scaffold393.19.cds	55.4878	40.2439
AT2G39440	arabidopsis_thaliana	AT2G39440.2	67.9012	52.4691	actinidia_chinensis	PSR87630	65.4762	50.5952
AT2G39440	arabidopsis_thaliana	AT2G39440.2	68.5185	53.7037	citrus_clementina	ESR61968	65.6805	51.4793
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	38.8889	oryza_indica	BGIOSGA007061-PA	54.6584	39.1304
AT2G39440	arabidopsis_thaliana	AT2G39440.2	45.679	30.8642	selaginella_moellendorffii	EFJ38140	61.157	41.3223
AT2G39440	arabidopsis_thaliana	AT2G39440.2	45.679	30.2469	selaginella_moellendorffii	EFJ29331	61.157	40.4959
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	38.8889	oryza_sativa	Os02t0168900-01	54.6584	39.1304
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	38.8889	oryza_rufipogon	ORUFI02G05370.1	54.6584	39.1304
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	40.7407	secale_cereale	SECCE6Rv1G0385360.1	55	41.25
AT2G39440	arabidopsis_thaliana	AT2G39440.2	66.0494	52.4691	gossypium_raimondii	KJB62729	66.0494	52.4691
AT2G39440	arabidopsis_thaliana	AT2G39440.2	65.4321	49.3827	helianthus_annuus	mRNA:HanXRQr2_Chr07g0289911	65.4321	49.3827
AT2G39440	arabidopsis_thaliana	AT2G39440.2	37.6543	29.0123	oryza_punctata	OPUNC02G04440.1	41.7808	32.1918
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.9383	40.7407	eragrostis_tef	Et_1B_012182.CDS	53.9394	40
AT2G39440	arabidopsis_thaliana	AT2G39440.2	40.7407	29.0123	eragrostis_tef	Et_1A_007375.CDS	45.2055	32.1918
AT2G39440	arabidopsis_thaliana	AT2G39440.2	55.5556	40.7407	sorghum_bicolor	EES06339	56.25	41.25
AT2G39440	arabidopsis_thaliana	AT2G39440.2	69.1358	53.7037	coffea_canephora	CDP11225	72.7273	56.4935
AT2G39440	arabidopsis_thaliana	AT2G39440.2	64.1975	47.5309	manihot_esculenta	OAY46821	60.1156	44.5087
AT2G39440	arabidopsis_thaliana	AT2G39440.2	59.2593	41.358	kalanchoe_fedtschenkoi	Kaladp0021s0011.1.v1.1	62.7451	43.7908
AT2G39440	arabidopsis_thaliana	AT2G39440.2	60.4938	43.8272	trifolium_pratense	Tp57577_TGAC_v2_mRNA25719	64.4737	46.7105
AT2G39440	arabidopsis_thaliana	AT2G39440.2	79.0123	66.0494	brassica_rapa_ro18	A05p008350.1_BraROA.1	48.1203	40.2256
AT2G39440	arabidopsis_thaliana	AT2G39440.2	64.1975	50	eucalyptus_grandis	KCW76675	62.6506	48.7952
AT2G39440	arabidopsis_thaliana	AT2G39440.2	66.6667	48.7654	prunus_persica	ONI11510	63.9053	46.7456
AT2G39440	arabidopsis_thaliana	AT2G39440.2	53.7037	40.1235	avena_sativa_ot3098	cds.AVESA.00001b.r3.6Cg0001834.1	55.0633	41.1392
AT2G39440	arabidopsis_thaliana	AT2G39440.2	53.7037	39.5062	avena_sativa_ot3098	cds.AVESA.00001b.r3.2Dg0000999.1	55.0633	40.5063
AT2G39440	arabidopsis_thaliana	AT2G39440.2	57.4074	41.9753	chenopodium_quinoa	AUR62007362-RA:cds	54.386	39.7661
AT2G39440	arabidopsis_thaliana	AT2G39440.2	55.5556	41.358	chenopodium_quinoa	AUR62018626-RA:cds	52.6316	39.1813
AT2G39440	arabidopsis_thaliana	AT2G39440.2	48.1481	35.1852	digitaria_exilis	Dexi1B01G0005140.1:cds	52.349	38.255
AT2G39440	arabidopsis_thaliana	AT2G39440.2	53.7037	38.8889	digitaria_exilis	Dexi1A01G0005420.1:cds	52.7273	38.1818
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	38.8889	oryza_barthii	OBART02G05260.1	54.321	38.8889
AT2G39440	arabidopsis_thaliana	AT2G39440.2	76.5432	69.1358	brassica_oleracea	Bo4g026410.1	77.5	70
AT2G39440	arabidopsis_thaliana	AT2G39440.2	67.284	48.1481	prunus_dulcis	VVA22717	64.497	46.1538
AT2G39440	arabidopsis_thaliana	AT2G39440.2	56.7901	37.6543	corylus_avellana	Cav02g24920.t1	22.1154	14.6635
AT2G39440	arabidopsis_thaliana	AT2G39440.2	54.321	37.037	leersia_perrieri	LPERR02G04540.1	53.9877	36.8098
AT2G39440	arabidopsis_thaliana	AT2G39440.2	68.5185	52.4691	nicotiana_attenuata	OIT06210	67.2727	51.5152
AT2G39440	arabidopsis_thaliana	AT2G39440.2	64.1975	50	olea_europaea	OE9A054730C1	63.0303	49.0909
AT2G39440	arabidopsis_thaliana	AT2G39440.2	72.2222	59.2593	pistacia_vera	cds-EVM0019028.1	70.0599	57.485
AT2G39440	arabidopsis_thaliana	AT2G39440.2	86.4198	76.5432	brassica_napus	CDX84230	86.9565	77.0186
AT2G39440	arabidopsis_thaliana	AT2G39440.2	75.9259	67.284	brassica_napus	CDY53584	76.3975	67.7019
AT2G39440	arabidopsis_thaliana	AT2G39440.2	75.9259	68.5185	brassica_napus	CDY20431	76.875	69.375
AT2G39440	arabidopsis_thaliana	AT2G39440.2	64.8148	52.4691	corchorus_capsularis	OMO70416	64.0244	51.8293
AT2G39440	arabidopsis_thaliana	AT2G39440.2	38.8889	29.0123	oryza_meridionalis	OMERI02G06090.1	51.6393	38.5246
AT2G39440	arabidopsis_thaliana	AT2G39440.2	38.8889	29.0123	oryza_meridionalis	OMERI02G06120.1	51.6393	38.5246
AT2G39440	arabidopsis_thaliana	AT2G39440.2	87.6543	83.3333	camelina_sativa	Csa05g013690.1	81.1429	77.1429
AT2G39440	arabidopsis_thaliana	AT2G39440.2	87.6543	82.716	camelina_sativa	Csa04g053510.1	66.3551	62.6168
AT2G39440	arabidopsis_thaliana	AT2G39440.2	87.6543	83.3333	camelina_sativa	Csa14g051840.1	87.1166	82.8221
AT2G39440	arabidopsis_thaliana	AT2G39440.2	66.6667	49.3827	malus_domestica_golden	mRNA:MD10G0198000	63.5294	47.0588
AT2G39440	arabidopsis_thaliana	AT2G39440.2	66.6667	51.2346	malus_domestica_golden	mRNA:MD05G0213700	63.5294	48.8235
AT2G39440	arabidopsis_thaliana	AT2G39440.2	62.3457	48.7654	daucus_carota	KZN11667	43.5345	34.0517
AT2G39440	arabidopsis_thaliana	AT2G39440.2	66.0494	48.7654	rosa_chinensis	PRQ30002	66.0494	48.7654
AT2G39440	arabidopsis_thaliana	AT2G39440.2	66.6667	48.7654	juglans_regia	cds.Jr04_15120_p1	65.0602	47.5904
AT2G39440	arabidopsis_thaliana	AT2G39440.2	63.5802	44.4444	juglans_regia	cds.Jr04_15130_p1	61.6766	43.1138
AT2G39440	arabidopsis_thaliana	AT2G39440.2	56.7901	45.679	nymphaea_colorata	NC14G0141660.1:cds	33.6996	27.1062
AT2G39440	arabidopsis_thaliana	AT2G39440.2	58.0247	41.9753	vigna_angularis	KOM32857	50.8108	36.7568
AT2G39440	arabidopsis_thaliana	AT2G39440.2	55.5556	40.1235	setaria_italica	KQL28564	54.5455	39.3939
AT2G39440	arabidopsis_thaliana	AT2G39440.2	43.8272	29.6296	physcomitrium_patens	Pp3c2_9480V3.2	38.7978	26.2295
AT2G39440	arabidopsis_thaliana	AT2G39440.2	63.5802	48.1481	vitis_vinifera	Vitvi01g01876_P001	59.1954	44.8276
AT2G39440	arabidopsis_thaliana	AT2G39440.2	66.0494	48.7654	cynara_cardunculus	KVI03069	64.8485	47.8788

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003674	enables molecular_function	1	ND	Arabidopsis_thaliana(3702)	Function
GO:0005634	located_in nucleus	1	ISM	Arabidopsis_thaliana(3702)	Component
GO:0006401	involved_in RNA catabolic process	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0032299	part_of ribonuclease H2 complex	1	IEA	Arabidopsis_thaliana(3702)	Component

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression