Description

Ensembl ID AT2G36170 Gene ID 818189 Accession -
Symbol AT2G36170 Alias - Full Name 60S ribosomal protein L40-1
Status Confidence Length 1280 bases Strand Plus strand
Position 2 : 15172061 - 15173340 RNA binding domain Ribosomal_L40e
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT2G36170 Ribosomal_L40e PF01020 2.1e-31 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT2G36170-201 AT2G36170 773 128aa AT2G36170

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G36170arabidopsis_thalianaAT3G52590.1100100arabidopsis_thalianaAT2G36170.1100100
AT2G36170arabidopsis_thalianaAT2G47110.157.961853.5032arabidopsis_thalianaAT2G36170.171.093865.625
AT2G36170arabidopsis_thalianaAT1G23410.157.692354.4872arabidopsis_thalianaAT2G36170.170.312566.4062
AT2G36170arabidopsis_thalianaAT1G53930.139.873434.8101arabidopsis_thalianaAT2G36170.149.218842.9688
AT2G36170arabidopsis_thalianaAT4G05050.239.73837.5546arabidopsis_thalianaAT2G36170.171.093867.1875
AT2G36170arabidopsis_thalianaAT5G37640.127.639825.7764arabidopsis_thalianaAT2G36170.169.531264.8438
AT2G36170arabidopsis_thalianaAT5G03240.314.705914.7059arabidopsis_thalianaAT2G36170.135.156235.1562
AT2G36170arabidopsis_thalianaAT4G02890.321.311521.3115arabidopsis_thalianaAT2G36170.150.781250.7812
AT2G36170arabidopsis_thalianaAT1G55060.137.826135.2174arabidopsis_thalianaAT2G36170.167.968863.2812
AT2G36170arabidopsis_thalianaAT1G65350.128.213226.6458arabidopsis_thalianaAT2G36170.170.312566.4062
AT2G36170arabidopsis_thalianaAT4G05320.219.912518.8184arabidopsis_thalianaAT2G36170.171.093867.1875
AT2G36170arabidopsis_thalianaAT5G20620.123.82222.5131arabidopsis_thalianaAT2G36170.171.093867.1875
AT2G36170arabidopsis_thalianaAT5G14360.112.26996.13497arabidopsis_thalianaAT2G36170.115.6257.8125
AT2G36170arabidopsis_thalianaAT5G40630.113.33337.27273arabidopsis_thalianaAT2G36170.117.18759.375
AT2G36170arabidopsis_thalianaAT3G09790.214.104611.4105arabidopsis_thalianaAT2G36170.169.531256.25
AT2G36170arabidopsis_thalianaAT5G09340.151.898737.9747arabidopsis_thalianaAT2G36170.132.031223.4375
AT2G36170arabidopsis_thalianaAT1G53950.127.083320.1389arabidopsis_thalianaAT2G36170.130.468822.6562
AT2G36170arabidopsis_thalianaAT1G11980.173.076953.8462arabidopsis_thalianaAT2G36170.144.531232.8125
AT2G36170arabidopsis_thalianaAT1G31340.157.692355.1282arabidopsis_thalianaAT2G36170.170.312567.1875
AT2G36170arabidopsis_thalianaAT2G35635.157.792255.1948arabidopsis_thalianaAT2G36170.169.531266.4062
AT2G36170arabidopsis_thalianaAT5G57860.348.421127.3684arabidopsis_thalianaAT2G36170.135.937520.3125
AT2G36170arabidopsis_thalianaAT3G62250.157.961853.5032arabidopsis_thalianaAT2G36170.171.093865.625
AT2G36170arabidopsis_thalianaAT2G46500.110.4246.18375arabidopsis_thalianaAT2G36170.146.093827.3438
AT2G36170arabidopsis_thalianaAT5G24240.210.4536.44599arabidopsis_thalianaAT2G36170.146.87528.9062

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G36170arabidopsis_thalianaAT2G36170.191.406285.9375chondrus_crispusCDF4086271.779167.4847
AT2G36170arabidopsis_thalianaAT2G36170.196.87593.75chlamydomonas_reinhardtiiPNW8792196.87593.75
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375marchantia_polymorphaPTQ3644898.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375marchantia_polymorphaPTQ4939898.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.195.312594.5312cannabis_sativa_femalecds.evm.model.07.4138.977638.6581
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188ficus_caricaFCD_00009720-RA:cds99.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188theobroma_cacaoEOY0831399.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188theobroma_cacaoEOY2366084.10684.106
AT2G36170arabidopsis_thalianaAT2G36170.199.218897.6562beta_vulgarisKMT0675699.218897.6562
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562beta_vulgarisKMS9632998.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188cucumis_meloMELO3C005912.2.199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.178.12576.5625cucumis_sativusKGN4983286.206984.4828
AT2G36170arabidopsis_thalianaAT2G36170.176.562575.7812populus_trichocarpaPotri.016G077000.1.v4.197.029796.0396
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375solanum_lycopersicumSolyc03g082570.3.199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375solanum_lycopersicumSolyc08g008590.3.199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375solanum_lycopersicumSolyc01g096290.3.199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375solanum_lycopersicumSolyc08g083120.3.199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.188.281286.7188solanum_lycopersicumSolyc06g053210.3.190.488.8
AT2G36170arabidopsis_thalianaAT2G36170.194.531289.0625caenorhabditis_elegansZK1010.1.194.531289.0625
AT2G36170arabidopsis_thalianaAT2G36170.192.187585.1562ostreococcus_lucimarinusABO9741392.187585.1562
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375vigna_radiataVradi10g00700.198.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.179.687576.5625amborella_trichopodaERN1302880.31577.1654
AT2G36170arabidopsis_thalianaAT2G36170.162.561.7188amborella_trichopodaERN1073696.385595.1807
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188phaseolus_vulgarisESW3491699.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375pisum_sativumPsat5g074080.1.cds98.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188quercus_subercds-POE59930.199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188quercus_lobataQL09p007503:mrna99.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188capsicum_annuumPHT8757599.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375lupinus_angustifoliusOIW2139998.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375lupinus_angustifoliusOIW2168498.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562lupinus_angustifoliusOIV9220798.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375lupinus_angustifoliusOIV9686398.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188eutrema_salsugineumESQ5224299.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.1100100arabidopsis_hallerig03516.t1100100
AT2G36170arabidopsis_thalianaAT2G36170.192.968892.1875cajanus_cajanC.cajan_30240.t98.347197.5207
AT2G36170arabidopsis_thalianaAT2G36170.196.093892.9688cajanus_cajanC.cajan_39685.t68.715166.4804
AT2G36170arabidopsis_thalianaAT2G36170.195.312593.75solanum_tuberosumPGSC0003DMT40001502293.129891.6031
AT2G36170arabidopsis_thalianaAT2G36170.197.656297.6562setaria_viridisTKW3194496.899296.8992
AT2G36170arabidopsis_thalianaAT2G36170.197.656297.6562setaria_viridisTKV9724996.899296.8992
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188ipomoea_trilobaitb10g16630.t199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188ipomoea_trilobaitb08g08180.t199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188ipomoea_trilobaitb05g20350.t199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375oryza_glumipatulaOGLUM03G09750.197.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375oryza_glumipatulaOGLUM09G20800.197.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.184.37578.9062zea_maysZm00001eb009900_P00167.924563.522
AT2G36170arabidopsis_thalianaAT2G36170.158.593855.4688sesamum_indicumSIN_1005880.t92.592687.6543
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562chara_brauniiGBG6763498.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.162.560.1562chara_brauniiGBG9083491.95488.5057
AT2G36170arabidopsis_thalianaAT2G36170.1100100arabis_alpinaKFK36512100100
AT2G36170arabidopsis_thalianaAT2G36170.194.531288.2812ciona_savignyiENSCSAVP0000000372887.681281.8841
AT2G36170arabidopsis_thalianaAT2G36170.162.553.125oryza_brachyanthaOB09G26630.171.428660.7143
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188glycine_maxKRH5358599.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.167.187564.0625cyanidioschyzon_merolaeCMC045CT67.187564.0625
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188corymbia_citriodoracds-KAF8008375.199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.175.781274.2188aegilops_tauschiiAET4Gv20012300.280.833379.1667
AT2G36170arabidopsis_thalianaAT2G36170.177.343875triticum_urartuTuG1812G0400000124.01.T0179.838777.4194
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188fraxinus_excelsiorFRAEX38873_v2_000127430.1.cds99.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.153.12543.75avena_sativa_sangAVESA.00010b.r2.3CG0502230.1.CDS6856
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562musa_acuminataMa11_p24570.198.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375oryza_glaberrimaORGLA09G0163100.197.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375oryza_glaberrimaORGLA03G0092400.197.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.182.031272.6562triticum_turgidumTRITD4Bv1G132410.178.358269.403
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375panicum_halliiPUZ4203497.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375panicum_halliiPUZ6961597.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375echinochloa_crusgalliscaffold3.319.cds97.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375echinochloa_crusgalliscaffold97.317.cds97.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375echinochloa_crusgalliscaffold121.169.cds97.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375echinochloa_crusgalliscaffold9.154.cds97.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375echinochloa_crusgalliscaffold102.57.cds97.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375actinidia_chinensisPSS0391099.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188actinidia_chinensisPSS2625799.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375actinidia_chinensisPSS3296699.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188citrus_clementinaESR5444699.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375oryza_indicaBGIOSGA031297-PA97.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.197.656297.6562oryza_indicaBGIOSGA011163-PA73.099473.0994
AT2G36170arabidopsis_thalianaAT2G36170.142.187541.4062selaginella_moellendorffiiEFJ1326598.181896.3636
AT2G36170arabidopsis_thalianaAT2G36170.196.093892.1875homo_sapiensENSP0000038810796.093892.1875
AT2G36170arabidopsis_thalianaAT2G36170.158.593848.4375oryza_rufipogonORUFI08G05640.130.612225.3061
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188gossypium_raimondiiKJB5252899.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188gossypium_raimondiiKJB3631999.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188gossypium_raimondiiKJB3633699.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188gossypium_raimondiiKJB3949799.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375helianthus_annuusmRNA:HanXRQr2_Chr06g025637198.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375helianthus_annuusmRNA:HanXRQr2_Chr04g016111198.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375helianthus_annuusmRNA:HanXRQr2_Chr06g024738198.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375eragrostis_tefEt_2B_019836.CDS78.260978.2609
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375eragrostis_tefEt_2A_015706.CDS77.777877.7778
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375eragrostis_tefEt_4B_038942.CDS97.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375medicago_truncatulaKEH2414698.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375medicago_truncatulaKEH4200298.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.197.656297.6562sorghum_bicolorEER9259196.899296.8992
AT2G36170arabidopsis_thalianaAT2G36170.197.656297.6562sorghum_bicolorEER9636396.899296.8992
AT2G36170arabidopsis_thalianaAT2G36170.171.093860.1562triticum_dicoccoidesTRIDC4AG011770.269.465758.7786
AT2G36170arabidopsis_thalianaAT2G36170.143.7542.9688triticum_dicoccoidesTRIDC4BG000300.194.915393.2203
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188manihot_esculentaOAY4292699.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375kalanchoe_fedtschenkoiKaladp0059s0078.1.v1.199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375kalanchoe_fedtschenkoiKaladp0055s0295.1.v1.199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375kalanchoe_fedtschenkoiKaladp0058s0398.1.v1.199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218897.6562kalanchoe_fedtschenkoiKaladp0037s0122.1.v1.199.218897.6562
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375trifolium_pratenseTp57577_TGAC_v2_mRNA3476798.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375trifolium_pratenseTp57577_TGAC_v2_mRNA1528885.714385.7143
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375trifolium_pratenseTp57577_TGAC_v2_mRNA2415591.304391.3043
AT2G36170arabidopsis_thalianaAT2G36170.17575eucalyptus_grandisKCW4829298.969198.9691
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188dioscorea_rotundataDRNTG_20930.199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375prunus_persicaONH9602799.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375prunus_persicaONI2571899.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.17574.2188avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0000213.193.203992.233
AT2G36170arabidopsis_thalianaAT2G36170.196.87595.3125chenopodium_quinoaAUR62006210-RA:cds44.604343.8849
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375oryza_barthiiOBART09G20080.197.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375oryza_barthiiOBART03G09660.197.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188brassica_oleraceaBo3g029960.199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375prunus_dulcisVVA1136099.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375prunus_dulcisVVA1547199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.193.7588.2812galdieria_sulphurariaEME3195093.7588.2812
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375corylus_avellanaCav01g02840.t198.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375corylus_avellanaCav01g02830.t198.437598.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188olea_europaeaOE9A084684C199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.194.531289.8438saccharomyces_cerevisiaeYKR094C94.531289.8438
AT2G36170arabidopsis_thalianaAT2G36170.194.531289.8438saccharomyces_cerevisiaeYIL148W94.531289.8438
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188pistacia_veracds-EVM0001324.199.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.196.093891.4062drosophila_melanogasterFBpp030683796.093891.4062
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188brassica_napusCDX8415399.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188brassica_napusCDX7506599.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188brassica_napusCDX7810899.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.198.437598.4375oryza_meridionalisOMERI01G25920.197.674497.6744
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375malus_domestica_goldenmRNA:MD01G018750099.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375malus_domestica_goldenmRNA:MD07G024810099.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375malus_domestica_goldenmRNA:MD12G002690099.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375malus_domestica_goldenmRNA:MD14G002620099.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.171.093866.4062rosa_chinensisPRQ4400988.349582.5243
AT2G36170arabidopsis_thalianaAT2G36170.196.093892.9688rosa_chinensisPRQ6053989.78186.8613
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375juglans_regiacds.Jr16_05300_p199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375juglans_regiacds.Jr13_23890_p188.811288.1119
AT2G36170arabidopsis_thalianaAT2G36170.199.218898.4375juglans_regiacds.Jr03_02060_p199.218898.4375
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188vigna_angularisKOM3906899.218899.2188
AT2G36170arabidopsis_thalianaAT2G36170.197.656297.6562setaria_italicaKQK9180158.139558.1395
AT2G36170arabidopsis_thalianaAT2G36170.197.656297.6562setaria_italicaKQL2361396.899296.8992
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562physcomitrium_patensPp3c24_430V3.198.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562physcomitrium_patensPp3c4_11930V3.198.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562physcomitrium_patensPp3c3_25480V3.198.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562physcomitrium_patensPp3c20_23170V3.298.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.198.437597.6562physcomitrium_patensPp3c10_25270V3.298.437597.6562
AT2G36170arabidopsis_thalianaAT2G36170.199.218899.2188vitis_viniferaVitvi16g01364_P00199.218899.2188

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003729enables mRNA binding1IDAArabidopsis_thaliana(3702)Function
GO:0005730located_in nucleolus1HDAArabidopsis_thaliana(3702)Component
GO:0005783located_in endoplasmic reticulum1HDAArabidopsis_thaliana(3702)Component
GO:0006412involved_in translation1IEAArabidopsis_thaliana(3702)Process
GO:0022625part_of cytosolic large ribosomal subunit1HDAArabidopsis_thaliana(3702)Component

Expression