Description

Ensembl ID AT2G32415 Gene ID 817803 Accession -
Symbol AT2G32415 Alias - Full Name Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein
Status Confidence Length 4499 bases Strand Minus strand
Position 2 : 13761110 - 13765608 RNA binding domain DNA_pol_A_exo1 , HRDC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT2G32415 HRDC PF00570 7.8e-07 1
AT2G32415 HRDC PF00570 7.9e-07 2
AT2G32415 HRDC PF00570 8e-07 3
AT2G32415 DNA_pol_A_exo1 PF01612 1.9e-50 4
AT2G32415 DNA_pol_A_exo1 PF01612 2e-50 5
AT2G32415 DNA_pol_A_exo1 PF01612 2e-50 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT2G32415-203 AT2G32415 2898 872aa AT2G32415

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G32415arabidopsis_thalianaAT2G25910.235.087720.1754arabidopsis_thalianaAT2G32415.313.45297.73543
AT2G32415arabidopsis_thalianaAT5G24340.234.302318.2171arabidopsis_thalianaAT2G32415.319.843110.5381
AT2G32415arabidopsis_thalianaAT5G35910.134.252922.069arabidopsis_thalianaAT2G32415.333.408121.5247
AT2G32415arabidopsis_thalianaAT1G54440.237.558725.0391arabidopsis_thalianaAT2G32415.326.905817.9372

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G32415arabidopsis_thalianaAT2G32415.349.327433.9686chlamydomonas_reinhardtiiPNW8448329.911620.5982
AT2G32415arabidopsis_thalianaAT2G32415.363.901347.6457marchantia_polymorphaPTQ4819761.093245.552
AT2G32415arabidopsis_thalianaAT2G32415.373.542658.5202papaver_somniferumRZC4634266.062452.568
AT2G32415arabidopsis_thalianaAT2G32415.374.103159.5291papaver_somniferumRZC6566371.228457.2198
AT2G32415arabidopsis_thalianaAT2G32415.374.887959.7534cannabis_sativa_femalecds.evm.model.10.147469.008355.062
AT2G32415arabidopsis_thalianaAT2G32415.378.475364.3498ficus_caricaFCD_00020348-RA:cds74.547461.1289
AT2G32415arabidopsis_thalianaAT2G32415.377.017963.9013theobroma_cacaoEOY0149571.637159.4369
AT2G32415arabidopsis_thalianaAT2G32415.372.085258.4081beta_vulgarisKMT0203470.1256.8157
AT2G32415arabidopsis_thalianaAT2G32415.375.448462.1076cucumis_meloMELO3C018818.2.175.363962.0381
AT2G32415arabidopsis_thalianaAT2G32415.376.00962.8924cucumis_sativusKGN4351876.696863.4615
AT2G32415arabidopsis_thalianaAT2G32415.376.345364.4619populus_trichocarpaPotri.002G229000.3.v4.173.147261.7615
AT2G32415arabidopsis_thalianaAT2G32415.375.560560.0897solanum_lycopersicumSolyc07g052340.3.172.162757.3876
AT2G32415arabidopsis_thalianaAT2G32415.375.112161.0987lactuca_sativacds-PLY80361.178.730964.0423
AT2G32415arabidopsis_thalianaAT2G32415.359.529146.861eragrostis_curvulaTVU3890362.323949.061
AT2G32415arabidopsis_thalianaAT2G32415.357.511245.5157eragrostis_curvulaTVU3888563.099649.9385
AT2G32415arabidopsis_thalianaAT2G32415.375.784861.0987vigna_radiataVradi02g07790.173.081158.9189
AT2G32415arabidopsis_thalianaAT2G32415.369.282553.139amborella_trichopodaERN1737462.932848.2688
AT2G32415arabidopsis_thalianaAT2G32415.375.224261.2108vigna_unguiculataVigun11g117200.1.v1.272.61959.0909
AT2G32415arabidopsis_thalianaAT2G32415.363.789252.13prunus_aviumPav_sc0001077.1_g020.1.mk:mrna80.367265.678
AT2G32415arabidopsis_thalianaAT2G32415.375.112161.3229phaseolus_vulgarisESW0453872.432459.1351
AT2G32415arabidopsis_thalianaAT2G32415.328.13923.0942asparagus_officinalisONK6551069.722257.2222
AT2G32415arabidopsis_thalianaAT2G32415.341.816132.8475asparagus_officinalisONK7554066.726352.415
AT2G32415arabidopsis_thalianaAT2G32415.374.327460.6502pisum_sativumPsat7g157200.1.cds71.83158.6132
AT2G32415arabidopsis_thalianaAT2G32415.368.946254.9327brachypodium_distachyonKQK1602363.467550.5676
AT2G32415arabidopsis_thalianaAT2G32415.377.690664.1256quercus_subercds-POE96859.177.952864.342
AT2G32415arabidopsis_thalianaAT2G32415.370.067355.157ananas_comosusAco009032.1.mrna168.908554.2448
AT2G32415arabidopsis_thalianaAT2G32415.397.533695.6278arabidopsis_lyratafgenesh1_pm.C_scaffold_400103997.643195.7351
AT2G32415arabidopsis_thalianaAT2G32415.378.811764.3498quercus_lobataQL08p033036:mrna73.922260.3575
AT2G32415arabidopsis_thalianaAT2G32415.376.345360.7623capsicum_annuumPHT7644872.216357.4761
AT2G32415arabidopsis_thalianaAT2G32415.371.524756.5022lupinus_angustifoliusOIW0595070.18755.4455
AT2G32415arabidopsis_thalianaAT2G32415.390.246684.1928eutrema_salsugineumESQ5182792.210886.0252
AT2G32415arabidopsis_thalianaAT2G32415.397.309495.2915arabidopsis_hallerig03122.t296.337494.3396
AT2G32415arabidopsis_thalianaAT2G32415.375.672662.4439cajanus_cajanC.cajan_27312.t75.842762.5843
AT2G32415arabidopsis_thalianaAT2G32415.369.170454.0359setaria_viridisTKW3497864.20450.1561
AT2G32415arabidopsis_thalianaAT2G32415.368.385753.6996oryza_nivaraONIVA07G14350.161.616248.3838
AT2G32415arabidopsis_thalianaAT2G32415.376.345361.0987ipomoea_trilobaitb02g06670.t172.139857.7331
AT2G32415arabidopsis_thalianaAT2G32415.368.609953.8117oryza_glumipatulaOGLUM07G15820.159.187646.4217
AT2G32415arabidopsis_thalianaAT2G32415.368.946253.5874zea_maysZm00001eb322610_P00160.951447.3736
AT2G32415arabidopsis_thalianaAT2G32415.372.8758.4081sesamum_indicumSIN_1016827.t65.72352.6795
AT2G32415arabidopsis_thalianaAT2G32415.369.058354.148lolium_perennecds.KYUSt_chr2.1954164.233650.365
AT2G32415arabidopsis_thalianaAT2G32415.359.080743.6099chara_brauniiGBG6377841.139730.3669
AT2G32415arabidopsis_thalianaAT2G32415.390.134584.0807arabis_alpinaKFK3112589.234283.2408
AT2G32415arabidopsis_thalianaAT2G32415.372.085266.8161brassica_junceacds.BjuA05g11040S90.182383.5905
AT2G32415arabidopsis_thalianaAT2G32415.334.977627.6906brassica_junceacds.BjuB01g41650S35.414328.0363
AT2G32415arabidopsis_thalianaAT2G32415.318.834115.9193brassica_junceacds.BjuB06g38350S86.597973.1959
AT2G32415arabidopsis_thalianaAT2G32415.311.88348.18386oryza_brachyanthaOB07G21890.160.227341.4773
AT2G32415arabidopsis_thalianaAT2G32415.362.780349.3274oryza_brachyanthaOB07G21900.165.268151.2821
AT2G32415arabidopsis_thalianaAT2G32415.375.336362.1076glycine_maxKRH5613373.12360.2829
AT2G32415arabidopsis_thalianaAT2G32415.361.883450.2242glycine_maxKRH2537269.873456.7089
AT2G32415arabidopsis_thalianaAT2G32415.372.982158.8565corymbia_citriodoracds-KAF8043066.172.900358.7906
AT2G32415arabidopsis_thalianaAT2G32415.369.282554.0359aegilops_tauschiiAET2Gv20476200.462.17348.4909
AT2G32415arabidopsis_thalianaAT2G32415.327.578521.3004oryza_longistaminataAMDW01040044.1_FGP00173.214356.5476
AT2G32415arabidopsis_thalianaAT2G32415.360.42647.7578oryza_longistaminataKN539000.1_FGP01459.165846.7618
AT2G32415arabidopsis_thalianaAT2G32415.313.452910.0897fraxinus_excelsiorFRAEX38873_v2_000291130.1.cds71.005953.2544
AT2G32415arabidopsis_thalianaAT2G32415.362.443950.1121fraxinus_excelsiorFRAEX38873_v2_000157570.2.cds41.598233.3831
AT2G32415arabidopsis_thalianaAT2G32415.319.170414.6861avena_sativa_sangAVESA.00010b.r2.UnG1474540.1.CDS63.333348.5185
AT2G32415arabidopsis_thalianaAT2G32415.360.874448.5426avena_sativa_sangAVESA.00010b.r2.2DG0350230.1.CDS59.539547.4781
AT2G32415arabidopsis_thalianaAT2G32415.368.946254.3722avena_sativa_sangAVESA.00010b.r2.2CG0275650.1.CDS64.129350.5735
AT2G32415arabidopsis_thalianaAT2G32415.370.291554.8206musa_acuminataMa04_p30200.266.349251.746
AT2G32415arabidopsis_thalianaAT2G32415.365.470951.6816oryza_glaberrimaORGLA07G0131300.161.733648.7315
AT2G32415arabidopsis_thalianaAT2G32415.369.170454.148hordeum_vulgareHORVU.MOREX.r3.2HG0141480.164.004250.1037
AT2G32415arabidopsis_thalianaAT2G32415.369.058353.9238triticum_turgidumTRITD2Av1G090870.363.050249.2323
AT2G32415arabidopsis_thalianaAT2G32415.369.394654.2601triticum_turgidumTRITD2Bv1G094120.363.357249.5394
AT2G32415arabidopsis_thalianaAT2G32415.368.609953.4753panicum_halliiPUZ7222763.485549.4813
AT2G32415arabidopsis_thalianaAT2G32415.349.215237.7803echinochloa_crusgalliscaffold43.392.cds53.86541.3497
AT2G32415arabidopsis_thalianaAT2G32415.368.609953.5874echinochloa_crusgalliscaffold239.95.cds64.150950.1048
AT2G32415arabidopsis_thalianaAT2G32415.368.609954.0359echinochloa_crusgalliscaffold58.204.cds64.083850.4712
AT2G32415arabidopsis_thalianaAT2G32415.317.825114.4619echinochloa_crusgalliscaffold43.423.cds63.651.6
AT2G32415arabidopsis_thalianaAT2G32415.348.430538.1166actinidia_chinensisPSS1614968.571453.9683
AT2G32415arabidopsis_thalianaAT2G32415.376.00963.565citrus_clementinaESR6080571.82260.0636
AT2G32415arabidopsis_thalianaAT2G32415.365.695151.9058oryza_indicaBGIOSGA025792-PA61.749248.7882
AT2G32415arabidopsis_thalianaAT2G32415.318.161414.574selaginella_moellendorffiiEFJ1512480.59764.6766
AT2G32415arabidopsis_thalianaAT2G32415.359.41745.4036selaginella_moellendorffiiEFJ0846036.57727.9503
AT2G32415arabidopsis_thalianaAT2G32415.368.385753.4753oryza_sativaOs07t0513100-0161.803448.3283
AT2G32415arabidopsis_thalianaAT2G32415.368.049352.8027triticum_aestivumTraesCS2D02G229500.162.512948.5067
AT2G32415arabidopsis_thalianaAT2G32415.367.825152.6906triticum_aestivumTraesCS2A02G223500.162.306948.4037
AT2G32415arabidopsis_thalianaAT2G32415.368.161453.0269triticum_aestivumTraesCS2B02G273800.162.615948.7127
AT2G32415arabidopsis_thalianaAT2G32415.368.609953.5874oryza_rufipogonORUFI07G16580.159.417546.4078
AT2G32415arabidopsis_thalianaAT2G32415.368.946254.0359secale_cerealeSECCE2Rv1G0090210.163.598849.8449
AT2G32415arabidopsis_thalianaAT2G32415.376.233263.3408gossypium_raimondiiKJB7822370.981258.977
AT2G32415arabidopsis_thalianaAT2G32415.374.327459.5291helianthus_annuusmRNA:HanXRQr2_Chr16g073178173.259758.674
AT2G32415arabidopsis_thalianaAT2G32415.367.825152.9148oryza_punctataOPUNC07G14830.161.60948.0652
AT2G32415arabidopsis_thalianaAT2G32415.369.84355.157eragrostis_tefEt_5B_045030.CDS61.622248.6647
AT2G32415arabidopsis_thalianaAT2G32415.368.946254.148eragrostis_tefEt_5A_042394.CDS62.121248.7879
AT2G32415arabidopsis_thalianaAT2G32415.374.551660.7623medicago_truncatulaAES8813171.505458.2796
AT2G32415arabidopsis_thalianaAT2G32415.347.085236.5471saccharum_spontaneumSspon.02G0006750-1A-mRNA-1:cds36.649228.4468
AT2G32415arabidopsis_thalianaAT2G32415.343.273533.296saccharum_spontaneumSspon.02G0006740-1A-mRNA-1:cds36.449528.0453
AT2G32415arabidopsis_thalianaAT2G32415.369.618853.9238sorghum_bicolorKXG3631862.537848.4391
AT2G32415arabidopsis_thalianaAT2G32415.367.376752.6906triticum_dicoccoidesTRIDC2AG029890.465.754951.4223
AT2G32415arabidopsis_thalianaAT2G32415.375.784860.6502coffea_canephoraCDP1081271.458857.1882
AT2G32415arabidopsis_thalianaAT2G32415.378.251164.4619manihot_esculentaOAY3503274.493161.3661
AT2G32415arabidopsis_thalianaAT2G32415.373.766859.6413kalanchoe_fedtschenkoiKaladp0036s0026.1.v1.172.626958.7196
AT2G32415arabidopsis_thalianaAT2G32415.375.672661.2108trifolium_pratenseTp57577_TGAC_v2_mRNA475471.88558.147
AT2G32415arabidopsis_thalianaAT2G32415.386.322978.5874brassica_rapa_ro18A04p030430.1_BraROA.188.100780.2059
AT2G32415arabidopsis_thalianaAT2G32415.384.080777.2421brassica_rapa_ro18A05p015110.1_BraROA.152.594748.317
AT2G32415arabidopsis_thalianaAT2G32415.374.663760.7623eucalyptus_grandisKCW8878272.077958.658
AT2G32415arabidopsis_thalianaAT2G32415.349.551637.6682dioscorea_rotundataDRNTG_35389.265.676149.9257
AT2G32415arabidopsis_thalianaAT2G32415.375.448460.2018prunus_persicaONI1845472.914458.1798
AT2G32415arabidopsis_thalianaAT2G32415.368.946254.3722avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0000708.461.316148.3549
AT2G32415arabidopsis_thalianaAT2G32415.368.72254.3722avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0002675.259.980447.456
AT2G32415arabidopsis_thalianaAT2G32415.368.834154.3722avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0000112.160.61247.8776
AT2G32415arabidopsis_thalianaAT2G32415.372.8759.0807chenopodium_quinoaAUR62025026-RA:cds69.296456.1834
AT2G32415arabidopsis_thalianaAT2G32415.340.58332.1749digitaria_exilisDexi2B01G0026730.1:cds57.551745.628
AT2G32415arabidopsis_thalianaAT2G32415.340.58331.9507digitaria_exilisDexi2A01G0028120.1:cds57.460345.2381
AT2G32415arabidopsis_thalianaAT2G32415.362.331848.6547oryza_barthiiOBART07G16250.164.576150.4065
AT2G32415arabidopsis_thalianaAT2G32415.349.887944.843brassica_oleraceaBo4g045950.183.804175.3296
AT2G32415arabidopsis_thalianaAT2G32415.385.874478.4753brassica_oleraceaBo4g178030.189.173581.4901
AT2G32415arabidopsis_thalianaAT2G32415.377.242162.2197prunus_dulcisVVA1761072.373958.2983
AT2G32415arabidopsis_thalianaAT2G32415.374.663760.7623corylus_avellanaCav05g02930.t137.776530.7431
AT2G32415arabidopsis_thalianaAT2G32415.367.488853.139leersia_perrieriLPERR07G13490.161.36648.318
AT2G32415arabidopsis_thalianaAT2G32415.377.017962.4439nicotiana_attenuataOIT0094072.621658.8795
AT2G32415arabidopsis_thalianaAT2G32415.375.112159.5291olea_europaeaOE9A100128C270.010555.4859
AT2G32415arabidopsis_thalianaAT2G32415.377.466465.1345pistacia_veracds-EVM0027916.173.276861.6119
AT2G32415arabidopsis_thalianaAT2G32415.378.923872.3094brassica_napusCDY1220888.553581.1321
AT2G32415arabidopsis_thalianaAT2G32415.386.659278.2511brassica_napusCDY1914089.26180.6005
AT2G32415arabidopsis_thalianaAT2G32415.386.43578.6996brassica_napusCDY1532289.339581.3441
AT2G32415arabidopsis_thalianaAT2G32415.389.349882.7354brassica_napusCDY4826887.582481.0989
AT2G32415arabidopsis_thalianaAT2G32415.377.017962.7803corchorus_capsularisOMO9370668.358255.7214
AT2G32415arabidopsis_thalianaAT2G32415.368.72253.6996oryza_meridionalisOMERI07G12830.248.040837.5392
AT2G32415arabidopsis_thalianaAT2G32415.394.394690.6951camelina_sativaCsa07g010220.193.451789.7891
AT2G32415arabidopsis_thalianaAT2G32415.395.85292.0404camelina_sativaCsa16g009000.183.741480.4114
AT2G32415arabidopsis_thalianaAT2G32415.393.497889.7982camelina_sativaCsa05g024450.195.096991.3341
AT2G32415arabidopsis_thalianaAT2G32415.376.905863.4529malus_domestica_goldenmRNA:MD09G009460072.286659.6417
AT2G32415arabidopsis_thalianaAT2G32415.363.901349.7758daucus_carotaKZM9652365.142950.7429
AT2G32415arabidopsis_thalianaAT2G32415.376.345362.5561rosa_chinensisPRQ5278472.369859.2986
AT2G32415arabidopsis_thalianaAT2G32415.315.022413.0045rosa_chinensisPRQ3670984.276772.956
AT2G32415arabidopsis_thalianaAT2G32415.371.524759.3049juglans_regiacds.Jr10_14060_p174.013961.3689
AT2G32415arabidopsis_thalianaAT2G32415.377.354363.9013juglans_regiacds.Jr10_14050_p172.938760.2537
AT2G32415arabidopsis_thalianaAT2G32415.362.668251.9058juglans_regiacds.Jr10_14070_p172.691860.2081
AT2G32415arabidopsis_thalianaAT2G32415.377.354363.9013juglans_regiacds.Jr10_14040_p172.784860.1266
AT2G32415arabidopsis_thalianaAT2G32415.365.246650.5605nymphaea_colorataNC1G0134710.1:cds65.319950.6173
AT2G32415arabidopsis_thalianaAT2G32415.374.327459.8655vigna_angularisKOM5037469.716156.1514
AT2G32415arabidopsis_thalianaAT2G32415.369.282554.0359setaria_italicaKQL2598464.30850.1561
AT2G32415arabidopsis_thalianaAT2G32415.360.762346.1883physcomitrium_patensPp3c18_1700V3.157.17343.4599
AT2G32415arabidopsis_thalianaAT2G32415.378.811764.7982vitis_viniferaVitvi12g00367_P00175.187261.8182

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000166enables nucleotide binding1IEAArabidopsis_thaliana(3702)Function
GO:0000175enables 3-5-RNA exonuclease activity1IEAArabidopsis_thaliana(3702)Function
GO:0000467involved_in exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1IEAArabidopsis_thaliana(3702)Process
GO:0003676enables nucleic acid binding1IEAArabidopsis_thaliana(3702)Function
GO:0005576located_in extracellular region1ISMArabidopsis_thaliana(3702)Component
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0005737located_in cytoplasm1IDAArabidopsis_thaliana(3702)Component

Expression