Description

Ensembl ID AT2G31170 Gene ID 817673 Accession -
Symbol SYCO Alias - Full Name Cysteinyl-tRNA synthetase, class Ia family protein
Status Confidence Length 3324 bases Strand Minus strand
Position 2 : 13282355 - 13285678 RNA binding domain tRNA-synt_1g , tRNA-synt_1e , DALR_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT2G31170 tRNA-synt_1g PF09334 6.8e-12 1
AT2G31170 DALR_2 PF09190 1.3e-05 2
AT2G31170 DALR_2 PF09190 1.3e-05 3
AT2G31170 DALR_2 PF09190 2.2e-05 4
AT2G31170 tRNA-synt_1e PF01406 2.4e-130 5
AT2G31170 tRNA-synt_1e PF01406 5.7e-92 6
AT2G31170 tRNA-synt_1e PF01406 5.7e-92 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
SYCO ARATH-202 AT2G31170 1950 401aa AT2G31170

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G31170arabidopsis_thalianaAT5G38830.169.471654.2074arabidopsis_thalianaAT2G31170.163.055149.2007
AT2G31170arabidopsis_thalianaAT3G56300.168.507253.5787arabidopsis_thalianaAT2G31170.159.502746.5364

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G31170arabidopsis_thalianaAT2G31170.147.602132.3268chondrus_crispusCDF3546553.069336.0396
AT2G31170arabidopsis_thalianaAT2G31170.163.055148.3126chlamydomonas_reinhardtiiPNW8909255.905542.8346
AT2G31170arabidopsis_thalianaAT2G31170.172.113757.3712marchantia_polymorphaPTQ3220067.554153.7438
AT2G31170arabidopsis_thalianaAT2G31170.164.47656.4831cannabis_sativa_femalecds.evm.model.08.192776.421166.9474
AT2G31170arabidopsis_thalianaAT2G31170.160.923654.1741cannabis_sativa_femalecds.evm.model.08.200881.666772.619
AT2G31170arabidopsis_thalianaAT2G31170.180.106671.048ficus_caricaFCD_00011062-RA:cds74.916966.4452
AT2G31170arabidopsis_thalianaAT2G31170.184.547174.9556theobroma_cacaoEOY0481982.638973.2639
AT2G31170arabidopsis_thalianaAT2G31170.182.23872.8242cucumis_meloMELO3C003719.2.179.280870.2055
AT2G31170arabidopsis_thalianaAT2G31170.181.527572.1137cucumis_sativusKGN6007679.687570.4861
AT2G31170arabidopsis_thalianaAT2G31170.184.014272.2913populus_trichocarpaPotri.018G024300.2.v4.182.692371.1538
AT2G31170arabidopsis_thalianaAT2G31170.181.172369.9822solanum_lycopersicumSolyc04g076390.3.180.316369.2443
AT2G31170arabidopsis_thalianaAT2G31170.146.181231.2611caenorhabditis_elegansY23H5A.7a.128.602919.3619
AT2G31170arabidopsis_thalianaAT2G31170.182.770969.0941lactuca_sativacds-PLY84034.181.468568.007
AT2G31170arabidopsis_thalianaAT2G31170.159.502745.6483ostreococcus_lucimarinusABO9835067.404451.7103
AT2G31170arabidopsis_thalianaAT2G31170.174.422761.8117eragrostis_curvulaTVU1042033.413127.7512
AT2G31170arabidopsis_thalianaAT2G31170.180.994773.1794citrullus_lanatusCla97C05G097740.179.720372.028
AT2G31170arabidopsis_thalianaAT2G31170.166.252256.8384vigna_radiataVradi05g10310.183.445271.5884
AT2G31170arabidopsis_thalianaAT2G31170.154.351749.2007amborella_trichopodaERN1431778.86671.3918
AT2G31170arabidopsis_thalianaAT2G31170.179.396169.0941vigna_unguiculataVigun09g211700.1.v1.279.255368.9716
AT2G31170arabidopsis_thalianaAT2G31170.182.23873.1794prunus_aviumPav_sc0001015.1_g420.1.mk:mrna78.077669.4772
AT2G31170arabidopsis_thalianaAT2G31170.179.218570.1599phaseolus_vulgarisESW0898779.07870.0355
AT2G31170arabidopsis_thalianaAT2G31170.175.488566.6075asparagus_officinalisONK7037386.032475.9109
AT2G31170arabidopsis_thalianaAT2G31170.179.040968.206pisum_sativumPsat5g031520.1.cds78.621967.8445
AT2G31170arabidopsis_thalianaAT2G31170.174.245161.4565brachypodium_distachyonKQJ9142873.721361.0229
AT2G31170arabidopsis_thalianaAT2G31170.182.948572.6465quercus_subercds-POF23810.185.531174.9084
AT2G31170arabidopsis_thalianaAT2G31170.175.310863.9432ananas_comosusAco018155.1.mrna171.742860.9137
AT2G31170arabidopsis_thalianaAT2G31170.197.690996.6252arabidopsis_lyratafgenesh2_kg.4__1104__AT2G31170.197.864896.7971
AT2G31170arabidopsis_thalianaAT2G31170.183.303773.357quercus_lobataQL02p021081:mrna85.740475.5027
AT2G31170arabidopsis_thalianaAT2G31170.180.461870.1599capsicum_annuumPHT9160179.473769.2982
AT2G31170arabidopsis_thalianaAT2G31170.120.07115.9858capsicum_annuumPHT6445675.838960.4027
AT2G31170arabidopsis_thalianaAT2G31170.179.396169.8046lupinus_angustifoliusOIW1499478.146968.7063
AT2G31170arabidopsis_thalianaAT2G31170.194.138592.0071eutrema_salsugineumESQ5169991.695589.6194
AT2G31170arabidopsis_thalianaAT2G31170.197.513396.0924arabidopsis_hallerig25776.t197.686896.2633
AT2G31170arabidopsis_thalianaAT2G31170.178.50868.7389cajanus_cajanC.cajan_09153.t79.069869.2308
AT2G31170arabidopsis_thalianaAT2G31170.179.396169.8046solanum_tuberosumPGSC0003DMT40002422081.272771.4545
AT2G31170arabidopsis_thalianaAT2G31170.175.488562.8774setaria_viridisTKW3458374.561462.1053
AT2G31170arabidopsis_thalianaAT2G31170.174.955661.6341oryza_nivaraONIVA09G20420.174.165260.9842
AT2G31170arabidopsis_thalianaAT2G31170.180.817171.7584ipomoea_trilobaitb15g19200.t478.856270.0173
AT2G31170arabidopsis_thalianaAT2G31170.174.600461.4565oryza_glumipatulaOGLUM09G19980.173.555260.5954
AT2G31170arabidopsis_thalianaAT2G31170.174.600461.8117zea_maysZm00001eb063470_P00274.468161.7021
AT2G31170arabidopsis_thalianaAT2G31170.174.245160.3908zea_maysZm00001eb104530_P00272.949459.3368
AT2G31170arabidopsis_thalianaAT2G31170.180.994770.6927sesamum_indicumSIN_1020974.t79.166769.0972
AT2G31170arabidopsis_thalianaAT2G31170.174.600462.167lolium_perennecds.KYUSt_chr5.4230873.298461.082
AT2G31170arabidopsis_thalianaAT2G31170.161.634149.9112chara_brauniiGBG8955750.73141.0819
AT2G31170arabidopsis_thalianaAT2G31170.196.2792.8952arabis_alpinaKFK3122495.929292.5664
AT2G31170arabidopsis_thalianaAT2G31170.141.918326.1101ciona_savignyiENSCSAVP0000000026247.580629.6371
AT2G31170arabidopsis_thalianaAT2G31170.147.424530.1954ciona_savignyiENSCSAVP0000002001336.326523.1293
AT2G31170arabidopsis_thalianaAT2G31170.174.955662.3446oryza_brachyanthaOB09G25850.173.391361.0435
AT2G31170arabidopsis_thalianaAT2G31170.180.461870.1599glycine_maxKRH5240280.748770.41
AT2G31170arabidopsis_thalianaAT2G31170.178.863269.627glycine_maxKRH6173378.723469.5035
AT2G31170arabidopsis_thalianaAT2G31170.146.891730.1954cyanidioschyzon_merolaeCME037CT47.396830.5206
AT2G31170arabidopsis_thalianaAT2G31170.176.198968.3837corymbia_citriodoracds-KAF8034995.187.372778.4114
AT2G31170arabidopsis_thalianaAT2G31170.173.712360.5684aegilops_tauschiiAET5Gv20831000.774.506361.2208
AT2G31170arabidopsis_thalianaAT2G31170.174.600460.746triticum_urartuTuG1812G0500003878.01.T0173.426659.7902
AT2G31170arabidopsis_thalianaAT2G31170.168.20656.6607oryza_longistaminataKN539205.1_FGP00844.290736.7935
AT2G31170arabidopsis_thalianaAT2G31170.123.623420.2487fraxinus_excelsiorFRAEX38873_v2_000391550.1.cds65.196155.8824
AT2G31170arabidopsis_thalianaAT2G31170.181.349971.7584fraxinus_excelsiorFRAEX38873_v2_000198590.3.cds80.069970.6294
AT2G31170arabidopsis_thalianaAT2G31170.174.422762.167avena_sativa_sangAVESA.00010b.r2.5DG0949830.1.CDS73.251761.1888
AT2G31170arabidopsis_thalianaAT2G31170.174.422761.8117avena_sativa_sangAVESA.00010b.r2.5CG0874710.1.CDS72.996560.6272
AT2G31170arabidopsis_thalianaAT2G31170.174.245161.2789avena_sativa_sangAVESA.00010b.r2.5AG0859890.1.CDS72.949460.2094
AT2G31170arabidopsis_thalianaAT2G31170.172.824261.1012musa_acuminataMa01_p20080.183.333369.9187
AT2G31170arabidopsis_thalianaAT2G31170.174.422761.1012oryza_glaberrimaORGLA09G0154600.173.123960.0349
AT2G31170arabidopsis_thalianaAT2G31170.174.245160.5684hordeum_vulgareHORVU.MOREX.r3.5HG0504770.172.949459.5113
AT2G31170arabidopsis_thalianaAT2G31170.174.600460.746triticum_turgidumTRITD5Av1G193390.363.25351.506
AT2G31170arabidopsis_thalianaAT2G31170.174.600460.9236triticum_turgidumTRITD5Bv1G186100.173.426659.965
AT2G31170arabidopsis_thalianaAT2G31170.174.77862.5222panicum_halliiPUZ7190873.859661.7544
AT2G31170arabidopsis_thalianaAT2G31170.174.600461.6341echinochloa_crusgalliscaffold43.151.cds73.170760.453
AT2G31170arabidopsis_thalianaAT2G31170.175.488562.6998echinochloa_crusgalliscaffold16.718.cds74.300761.7133
AT2G31170arabidopsis_thalianaAT2G31170.174.77862.167echinochloa_crusgalliscaffold27.198.cds73.472961.082
AT2G31170arabidopsis_thalianaAT2G31170.182.23871.4032actinidia_chinensisPSS1117780.66270.0348
AT2G31170arabidopsis_thalianaAT2G31170.178.863271.5808citrus_clementinaESR6361290.060981.7444
AT2G31170arabidopsis_thalianaAT2G31170.174.955661.6341oryza_indicaBGIOSGA029287-PA74.165260.9842
AT2G31170arabidopsis_thalianaAT2G31170.165.364152.2202selaginella_moellendorffiiEFJ0845674.796759.7561
AT2G31170arabidopsis_thalianaAT2G31170.166.252252.5755selaginella_moellendorffiiEFJ1512974.302858.9641
AT2G31170arabidopsis_thalianaAT2G31170.174.955661.6341oryza_sativaOs09t0556500-0174.165260.9842
AT2G31170arabidopsis_thalianaAT2G31170.148.667931.6163homo_sapiensENSP0000036989732.972321.42
AT2G31170arabidopsis_thalianaAT2G31170.146.358831.2611homo_sapiensENSP0000025734746.276631.2057
AT2G31170arabidopsis_thalianaAT2G31170.174.600460.746triticum_aestivumTraesCS5A02G357400.173.555259.8949
AT2G31170arabidopsis_thalianaAT2G31170.167.673255.7726triticum_aestivumTraesCS5D02G366500.173.694460.735
AT2G31170arabidopsis_thalianaAT2G31170.174.955661.1012triticum_aestivumTraesCS5B02G359900.173.647560.0349
AT2G31170arabidopsis_thalianaAT2G31170.174.955661.6341oryza_rufipogonORUFI09G20850.174.165260.9842
AT2G31170arabidopsis_thalianaAT2G31170.174.245160.3908secale_cerealeSECCE5Rv1G0350210.173.076959.4406
AT2G31170arabidopsis_thalianaAT2G31170.184.369475.1332gossypium_raimondiiKJB7173782.608773.5652
AT2G31170arabidopsis_thalianaAT2G31170.182.060469.8046helianthus_annuusmRNA:HanXRQr2_Chr16g074600180.769268.7063
AT2G31170arabidopsis_thalianaAT2G31170.172.468959.1474oryza_punctataOPUNC09G17620.370.103157.2165
AT2G31170arabidopsis_thalianaAT2G31170.173.889962.167eragrostis_tefEt_2B_019915.CDS72.600361.082
AT2G31170arabidopsis_thalianaAT2G31170.174.245161.8117eragrostis_tefEt_2A_015770.CDS72.822360.6272
AT2G31170arabidopsis_thalianaAT2G31170.179.751368.5613medicago_truncatulaAES7359678.771967.7193
AT2G31170arabidopsis_thalianaAT2G31170.174.067561.6341saccharum_spontaneumSspon.02G0008180-2B-mRNA-1:cds67.915356.5147
AT2G31170arabidopsis_thalianaAT2G31170.174.600461.4565sorghum_bicolorEER9933873.555260.5954
AT2G31170arabidopsis_thalianaAT2G31170.173.712360.3908triticum_dicoccoidesTRIDC5AG052250.274.239760.8229
AT2G31170arabidopsis_thalianaAT2G31170.174.422760.5684triticum_dicoccoidesTRIDC5BG056560.373.508859.8246
AT2G31170arabidopsis_thalianaAT2G31170.183.836673.5346coffea_canephoraCDP1354481.099771.134
AT2G31170arabidopsis_thalianaAT2G31170.182.593373.8899manihot_esculentaOAY5364580.310971.848
AT2G31170arabidopsis_thalianaAT2G31170.177.975166.6075kalanchoe_fedtschenkoiKaladp0027s0033.1.v1.186.587873.9645
AT2G31170arabidopsis_thalianaAT2G31170.179.92967.6732trifolium_pratenseTp57577_TGAC_v2_mRNA324579.086166.9596
AT2G31170arabidopsis_thalianaAT2G31170.134.635928.2416trifolium_pratenseTp57577_TGAC_v2_mRNA3672671.167958.0292
AT2G31170arabidopsis_thalianaAT2G31170.192.362388.8099brassica_rapa_ro18A05p016440.1_BraROA.194.202990.5797
AT2G31170arabidopsis_thalianaAT2G31170.151.332147.6021eucalyptus_grandisKCW8034480.952475.07
AT2G31170arabidopsis_thalianaAT2G31170.179.218565.5417dioscorea_rotundataDRNTG_02412.177.430664.0625
AT2G31170arabidopsis_thalianaAT2G31170.182.23873.1794prunus_persicaONI3446977.815169.2437
AT2G31170arabidopsis_thalianaAT2G31170.174.600462.167avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0002707.873.426661.1888
AT2G31170arabidopsis_thalianaAT2G31170.174.422761.8117avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0002783.270.77758.7838
AT2G31170arabidopsis_thalianaAT2G31170.174.245161.2789avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0003214.172.949460.2094
AT2G31170arabidopsis_thalianaAT2G31170.172.291360.0355digitaria_exilisDexi2A01G0025710.1:cds72.291360.0355
AT2G31170arabidopsis_thalianaAT2G31170.126.820622.5577digitaria_exilisDexi2B01G0024310.1:cds65.36854.9784
AT2G31170arabidopsis_thalianaAT2G31170.174.77861.4565oryza_barthiiOBART09G19250.173.217460.1739
AT2G31170arabidopsis_thalianaAT2G31170.193.072889.5204brassica_oleraceaBo4g052410.194.075490.4847
AT2G31170arabidopsis_thalianaAT2G31170.182.060473.1794prunus_dulcisVVA2388177.647169.2437
AT2G31170arabidopsis_thalianaAT2G31170.140.67527.8863galdieria_sulphurariaEME3159150.440534.5815
AT2G31170arabidopsis_thalianaAT2G31170.182.770974.778corylus_avellanaCav08g02960.t141.831237.7917
AT2G31170arabidopsis_thalianaAT2G31170.175.488562.3446leersia_perrieriLPERR09G15160.174.430861.4711
AT2G31170arabidopsis_thalianaAT2G31170.180.817171.7584nicotiana_attenuataOIS9984379.268370.3833
AT2G31170arabidopsis_thalianaAT2G31170.181.349971.048olea_europaeaOE9A012621C480.210270.0525
AT2G31170arabidopsis_thalianaAT2G31170.146.536431.4387saccharomyces_cerevisiaeYNL247W34.159123.0769
AT2G31170arabidopsis_thalianaAT2G31170.183.836674.9556pistacia_veracds-EVM0025039.182.517573.7762
AT2G31170arabidopsis_thalianaAT2G31170.148.845531.4387drosophila_melanogasterFBpp008637337.11223.8866
AT2G31170arabidopsis_thalianaAT2G31170.144.227428.7744drosophila_melanogasterFBpp030898644.623729.0323
AT2G31170arabidopsis_thalianaAT2G31170.184.547181.5275brassica_napusCDY1078996.74893.2927
AT2G31170arabidopsis_thalianaAT2G31170.193.072889.5204brassica_napusCDY2475394.075490.4847
AT2G31170arabidopsis_thalianaAT2G31170.183.836674.778corchorus_capsularisOMP0752682.08773.2174
AT2G31170arabidopsis_thalianaAT2G31170.196.2794.4938camelina_sativaCsa05g030130.196.2794.4938
AT2G31170arabidopsis_thalianaAT2G31170.196.2795.2043camelina_sativaCsa16g012450.196.441395.3737
AT2G31170arabidopsis_thalianaAT2G31170.195.914794.3162camelina_sativaCsa07g011720.196.085494.484
AT2G31170arabidopsis_thalianaAT2G31170.182.593373.1794malus_domestica_goldenmRNA:MD15G011230082.593373.1794
AT2G31170arabidopsis_thalianaAT2G31170.179.92969.4494daucus_carotaKZN0799677.720267.5302
AT2G31170arabidopsis_thalianaAT2G31170.181.705271.9361rosa_chinensisPRQ2670381.996472.1925
AT2G31170arabidopsis_thalianaAT2G31170.171.225664.2984juglans_regiacds.Jr08_01250_p184.243776.0504
AT2G31170arabidopsis_thalianaAT2G31170.182.415673.357juglans_regiacds.Jr08_01240_p183.603674.4144
AT2G31170arabidopsis_thalianaAT2G31170.178.863265.897nymphaea_colorataNC3G0224590.1:cds69.701758.2418
AT2G31170arabidopsis_thalianaAT2G31170.178.685668.3837vigna_angularisKOM4201178.546168.2624
AT2G31170arabidopsis_thalianaAT2G31170.175.310862.6998setaria_italicaKQL2565974.38661.9298
AT2G31170arabidopsis_thalianaAT2G31170.171.403256.4831physcomitrium_patensPp3c24_17740V3.169.670755.1127
AT2G31170arabidopsis_thalianaAT2G31170.183.303772.8242vitis_viniferaVitvi04g00580_P00182.136671.8039
AT2G31170arabidopsis_thalianaAT2G31170.182.770969.4494cynara_cardunculusKVH8791481.611268.4764

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0004817enables cysteine-tRNA ligase activity1IEAArabidopsis_thaliana(3702)Function
GO:0005737located_in cytoplasm2IEA,ISMArabidopsis_thaliana(3702)Component
GO:0005739located_in mitochondrion1IDAArabidopsis_thaliana(3702)Component
GO:0006423involved_in cysteinyl-tRNA aminoacylation1IEAArabidopsis_thaliana(3702)Process
GO:0009507located_in chloroplast3HDA,IDA,ISMArabidopsis_thaliana(3702)Component
GO:0009570located_in chloroplast stroma1HDAArabidopsis_thaliana(3702)Component
GO:0010197acts_upstream_of_or_within polar nucleus fusion1IMPArabidopsis_thaliana(3702)Process
GO:0042407acts_upstream_of_or_within cristae formation1IMPArabidopsis_thaliana(3702)Process
GO:0043067acts_upstream_of_or_within regulation of programmed cell death1IMPArabidopsis_thaliana(3702)Process

Expression