Description

Ensembl ID AT2G19870 Gene ID 816506 Accession -
Symbol AT2G19870 Alias - Full Name tRNA/rRNA methyltransferase (SpoU) family protein
Status Confidence Length 2218 bases Strand Plus strand
Position 2 : 8575785 - 8578002 RNA binding domain SpoU_sub_bind , SpoU_methylase
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT2G19870 SpoU_methylase PF00588 6.7e-27 1
AT2G19870 SpoU_sub_bind PF08032 1.2e-11 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT2G19870-201 AT2G19870 2218 589aa AT2G19870

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G19870arabidopsis_thalianaAT4G17610.19.409194.64989arabidopsis_thalianaAT2G19870.129.20214.4312
AT2G19870arabidopsis_thalianaAT4G38020.128.12517.3295arabidopsis_thalianaAT2G19870.116.808110.3565
AT2G19870arabidopsis_thalianaAT5G15390.135.142919.4286arabidopsis_thalianaAT2G19870.120.882911.545
AT2G19870arabidopsis_thalianaAT4G15520.130.180219.8198arabidopsis_thalianaAT2G19870.111.37527.47029

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G19870arabidopsis_thalianaAT2G19870.137.181725.1273chlamydomonas_reinhardtiiPNW7362236.560924.7078
AT2G19870arabidopsis_thalianaAT2G19870.145.500931.5789marchantia_polymorphaPTQ2975242.675229.6178
AT2G19870arabidopsis_thalianaAT2G19870.151.103641.0866papaver_somniferumRZC6852754.430443.7613
AT2G19870arabidopsis_thalianaAT2G19870.152.29241.5959papaver_somniferumRZC8169427.136621.5859
AT2G19870arabidopsis_thalianaAT2G19870.159.25346.3497cannabis_sativa_femalecds.novel_model_861_5bda875f.3.5bdae6e359.25346.3497
AT2G19870arabidopsis_thalianaAT2G19870.155.34845.1613ficus_caricaFCD_00008291-RA:cds62.692351.1538
AT2G19870arabidopsis_thalianaAT2G19870.159.422748.0475theobroma_cacaoEOY3065159.32247.9661
AT2G19870arabidopsis_thalianaAT2G19870.155.857442.9542beta_vulgarisKMT0320759.601445.8333
AT2G19870arabidopsis_thalianaAT2G19870.157.555244.652cucumis_meloMELO3C015412.2.154.765842.4879
AT2G19870arabidopsis_thalianaAT2G19870.155.178342.6146cucumis_sativusKGN6617561.436747.448
AT2G19870arabidopsis_thalianaAT2G19870.158.234347.0289populus_trichocarpaPotri.018G087800.3.v4.155.233544.6055
AT2G19870arabidopsis_thalianaAT2G19870.152.461840.9168solanum_lycopersicumSolyc05g017990.3.166.30951.7167
AT2G19870arabidopsis_thalianaAT2G19870.122.241111.0357caenorhabditis_elegansY45F3A.9.144.557822.1088
AT2G19870arabidopsis_thalianaAT2G19870.157.215643.2937lactuca_sativacds-PLY69075.156.073242.4293
AT2G19870arabidopsis_thalianaAT2G19870.131.069621.2224ostreococcus_lucimarinusABO9980557.547239.3082
AT2G19870arabidopsis_thalianaAT2G19870.150.594240.2377eragrostis_curvulaTVU3515055.287643.9703
AT2G19870arabidopsis_thalianaAT2G19870.156.876145.5009vigna_radiataVradi07g28680.160.035848.0287
AT2G19870arabidopsis_thalianaAT2G19870.146.1837.5212amborella_trichopodaERN0558366.1853.7713
AT2G19870arabidopsis_thalianaAT2G19870.156.536545.3311vigna_unguiculataVigun03g025600.1.v1.2.CDS.159.677447.8495
AT2G19870arabidopsis_thalianaAT2G19870.158.404146.3497prunus_aviumPav_sc0000212.1_g910.1.mk:CDS:161.101248.4902
AT2G19870arabidopsis_thalianaAT2G19870.156.876145.8404phaseolus_vulgarisESW3227960.035848.3871
AT2G19870arabidopsis_thalianaAT2G19870.152.122241.7657asparagus_officinalisONK6979956.851945.5556
AT2G19870arabidopsis_thalianaAT2G19870.158.234346.3497pisum_sativumPsat7g016720.1.cds56.694245.124
AT2G19870arabidopsis_thalianaAT2G19870.149.915140.747brachypodium_distachyonKQK0966658.102847.4308
AT2G19870arabidopsis_thalianaAT2G19870.157.894744.9915quercus_subercds-POE95366.159.407746.1672
AT2G19870arabidopsis_thalianaAT2G19870.150.933840.4075ananas_comosusAco005983.1.mrna150.590240.1349
AT2G19870arabidopsis_thalianaAT2G19870.173.684269.1002arabidopsis_lyratafgenesh2_kg.3__3185__AT2G19870.175.216670.5373
AT2G19870arabidopsis_thalianaAT2G19870.155.008543.1239quercus_lobataQL02p041581:mrna:CDS:162.669249.1296
AT2G19870arabidopsis_thalianaAT2G19870.125.127319.0153capsicum_annuumPHT7651567.889951.3761
AT2G19870arabidopsis_thalianaAT2G19870.157.215645.8404lupinus_angustifoliusOIV9340859.019347.2855
AT2G19870arabidopsis_thalianaAT2G19870.171.646965.365eutrema_salsugineumESQ5035769.867563.7417
AT2G19870arabidopsis_thalianaAT2G19870.175.551871.4771arabidopsis_hallerig20906.t1.cds177.256973.0903
AT2G19870arabidopsis_thalianaAT2G19870.149.915142.1053cajanus_cajanC.cajan_23143.t72.413861.0837
AT2G19870arabidopsis_thalianaAT2G19870.152.631642.1053solanum_tuberosumPGSC0003DMT40008859171.593557.2748
AT2G19870arabidopsis_thalianaAT2G19870.151.273340.747setaria_viridisTKW1668458.640846.6019
AT2G19870arabidopsis_thalianaAT2G19870.150.76440.9168oryza_nivaraONIVA01G34750.157.833746.6151
AT2G19870arabidopsis_thalianaAT2G19870.152.971143.8031ipomoea_trilobaitb12g20160.t160.115649.711
AT2G19870arabidopsis_thalianaAT2G19870.151.103641.2564oryza_glumipatulaOGLUM01G34520.158.220547.0019
AT2G19870arabidopsis_thalianaAT2G19870.153.140940.2377zea_maysZm00001eb371210_P00157.012743.1694
AT2G19870arabidopsis_thalianaAT2G19870.155.857444.9915sesamum_indicumSIN_1013439.t.cds163.759751.3566
AT2G19870arabidopsis_thalianaAT2G19870.151.782741.9355lolium_perennecds.KYUSt_chr3.3028745.658736.976
AT2G19870arabidopsis_thalianaAT2G19870.147.198631.5789chara_brauniiGBG6132931.590921.1364
AT2G19870arabidopsis_thalianaAT2G19870.168.930462.1392arabis_alpinaKFK4035169.520562.6712
AT2G19870arabidopsis_thalianaAT2G19870.117.14778.82852ciona_savignyiENSCSAVP0000000420244.298222.807
AT2G19870arabidopsis_thalianaAT2G19870.169.2763.4975brassica_junceacds.BjuB03g01270S71.080165.1568
AT2G19870arabidopsis_thalianaAT2G19870.166.383760.6112brassica_junceacds.BjuA07g00830S70.577664.4404
AT2G19870arabidopsis_thalianaAT2G19870.146.010238.2003oryza_brachyanthaOB01G39360.168.607656.962
AT2G19870arabidopsis_thalianaAT2G19870.157.894746.3497glycine_maxKRH4149261.220849.0126
AT2G19870arabidopsis_thalianaAT2G19870.134.295423.2598cyanidioschyzon_merolaeCMH261CT44.201329.9781
AT2G19870arabidopsis_thalianaAT2G19870.153.8242.4448corymbia_citriodoracds-KAF7851896.149.45439.0016
AT2G19870arabidopsis_thalianaAT2G19870.151.952541.5959aegilops_tauschiiAET3Gv20662500.355.03644.0647
AT2G19870arabidopsis_thalianaAT2G19870.143.293736.163oryza_longistaminataKN538775.1_FGP00273.91361.7391
AT2G19870arabidopsis_thalianaAT2G19870.150.76441.9355fraxinus_excelsiorFRAEX38873_v2_000196040.1.cds175.125662.0603
AT2G19870arabidopsis_thalianaAT2G19870.150.084940.2377avena_sativa_sangAVESA.00010b.r2.3AG0449310.2.CDS47.81238.4117
AT2G19870arabidopsis_thalianaAT2G19870.150.084940.2377avena_sativa_sangAVESA.00010b.r2.3CG0503150.1.CDS56.730845.5769
AT2G19870arabidopsis_thalianaAT2G19870.149.915140.5773avena_sativa_sangAVESA.00010b.r2.3DG0550240.1.CDS57.198446.4981
AT2G19870arabidopsis_thalianaAT2G19870.151.612940.2377musa_acuminataMa09_p05890.158.914745.9302
AT2G19870arabidopsis_thalianaAT2G19870.151.103641.2564oryza_glaberrimaORGLA01G0247700.158.220547.0019
AT2G19870arabidopsis_thalianaAT2G19870.151.103641.2564oryza_glaberrimaORGLA01G0403800.158.220547.0019
AT2G19870arabidopsis_thalianaAT2G19870.152.801442.1053hordeum_vulgareHORVU.MOREX.r3.3HG0287790.152.533841.8919
AT2G19870arabidopsis_thalianaAT2G19870.151.952541.0866triticum_turgidumTRITD3Bv1G164340.451.776640.9475
AT2G19870arabidopsis_thalianaAT2G19870.146.519535.4839triticum_turgidumTRITD3Av1G183020.941.89631.9572
AT2G19870arabidopsis_thalianaAT2G19870.150.424440.5773panicum_halliiPUZ5486257.446846.2282
AT2G19870arabidopsis_thalianaAT2G19870.150.084940.5773echinochloa_crusgalliscaffold89.134.cds55.451144.9248
AT2G19870arabidopsis_thalianaAT2G19870.157.555247.708actinidia_chinensisPSS2084060.752750.3584
AT2G19870arabidopsis_thalianaAT2G19870.157.894745.3311citrus_clementinaESR6454158.09245.4855
AT2G19870arabidopsis_thalianaAT2G19870.150.76441.0866oryza_indicaBGIOSGA000851-PA57.833746.8085
AT2G19870arabidopsis_thalianaAT2G19870.129.881222.9202selaginella_moellendorffiiEFJ3768472.131155.3279
AT2G19870arabidopsis_thalianaAT2G19870.129.881223.09selaginella_moellendorffiiEFJ1500672.131155.7377
AT2G19870arabidopsis_thalianaAT2G19870.119.185116.4686oryza_sativaOs01t0742000-0169.325259.5092
AT2G19870arabidopsis_thalianaAT2G19870.125.976216.8081homo_sapiensENSP0000048155943.342828.0453
AT2G19870arabidopsis_thalianaAT2G19870.152.461841.4261triticum_aestivumTraesCS3B02G310400.151.58640.7346
AT2G19870arabidopsis_thalianaAT2G19870.151.612941.5959triticum_aestivumTraesCS3D02G276500.154.774844.1441
AT2G19870arabidopsis_thalianaAT2G19870.151.952541.4261triticum_aestivumTraesCS3A02G276400.253.403142.5829
AT2G19870arabidopsis_thalianaAT2G19870.150.933840.9168oryza_rufipogonORUFI01G33500.158.027146.6151
AT2G19870arabidopsis_thalianaAT2G19870.152.631642.1053secale_cerealeSECCE3Rv1G0187700.152.364941.8919
AT2G19870arabidopsis_thalianaAT2G19870.159.592547.5382gossypium_raimondiiKJB0673962.790750.0894
AT2G19870arabidopsis_thalianaAT2G19870.155.34842.6146helianthus_annuusCDS:HanXRQr2_Chr10g0465011.159.05845.471
AT2G19870arabidopsis_thalianaAT2G19870.113.921910.5263helianthus_annuusmRNA:HanXRQr2_Chr12g05572118262
AT2G19870arabidopsis_thalianaAT2G19870.155.517842.6146helianthus_annuusCDS:HanXRQr2_Chr10g0465031.159.239145.471
AT2G19870arabidopsis_thalianaAT2G19870.151.443141.2564oryza_punctataOPUNC01G15300.151.26941.1168
AT2G19870arabidopsis_thalianaAT2G19870.150.254739.3888eragrostis_tefEt_3B_029331.CDS46.835436.7089
AT2G19870arabidopsis_thalianaAT2G19870.149.575638.8795eragrostis_tefEt_3A_024941.CDS48.50538.0399
AT2G19870arabidopsis_thalianaAT2G19870.157.72546.0102medicago_truncatulaAET0518559.440647.3776
AT2G19870arabidopsis_thalianaAT2G19870.153.650341.0866saccharum_spontaneumSspon.03G0006790-3C-mRNA-1:cds47.305436.2275
AT2G19870arabidopsis_thalianaAT2G19870.153.650340.747sorghum_bicolorOQU8750557.039743.3213
AT2G19870arabidopsis_thalianaAT2G19870.151.952541.5959triticum_dicoccoidesTRIDC3BG046300.255.03644.0647
AT2G19870arabidopsis_thalianaAT2G19870.151.103641.5959triticum_dicoccoidesTRIDC3AG041070.451.541141.9521
AT2G19870arabidopsis_thalianaAT2G19870.154.838742.275coffea_canephoraCDP0325560.037246.2825
AT2G19870arabidopsis_thalianaAT2G19870.159.592547.0289manihot_esculentaOAY2721858.20945.937
AT2G19870arabidopsis_thalianaAT2G19870.156.366742.9542kalanchoe_fedtschenkoiKaladp0057s0071.1.v1.1.CDS.155.425742.2371
AT2G19870arabidopsis_thalianaAT2G19870.170.118864.5161brassica_rapa_ro18A07p001240.1_BraROA.1.cds176.199370.1107
AT2G19870arabidopsis_thalianaAT2G19870.155.008543.4635eucalyptus_grandisKCW7963750.62540
AT2G19870arabidopsis_thalianaAT2G19870.149.066239.3888dioscorea_rotundataDRNTG_17071.1.cds163.377250.8772
AT2G19870arabidopsis_thalianaAT2G19870.161.290347.3684prunus_persicaONH9793857.7644.64
AT2G19870arabidopsis_thalianaAT2G19870.152.461841.2564avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0002189.147.611737.4422
AT2G19870arabidopsis_thalianaAT2G19870.153.140941.4261avena_sativa_ot3098cds.AVESA.00001b.r3.3Cg0002439.147.352536.9138
AT2G19870arabidopsis_thalianaAT2G19870.147.198639.219oryza_barthiiOBART01G30380.165.411854.3529
AT2G19870arabidopsis_thalianaAT2G19870.166.213960.2716brassica_oleraceaBo7g005220.171.428665.0183
AT2G19870arabidopsis_thalianaAT2G19870.161.120547.1986prunus_dulcisVVA1047157.644.48
AT2G19870arabidopsis_thalianaAT2G19870.131.918519.8642galdieria_sulphurariaEME3074753.868233.5244
AT2G19870arabidopsis_thalianaAT2G19870.160.101946.6893corylus_avellanaCav11g13450.t1.cds158.706545.6053
AT2G19870arabidopsis_thalianaAT2G19870.150.424441.7657leersia_perrieriLPERR01G26050.158.235348.2353
AT2G19870arabidopsis_thalianaAT2G19870.155.857444.8217olea_europaeaOE9A017149C163.026850.5747
AT2G19870arabidopsis_thalianaAT2G19870.155.517844.8217olea_europaeaOE9A011640C162.643750.5747
AT2G19870arabidopsis_thalianaAT2G19870.126.655314.9406saccharomyces_cerevisiaeYOR201C38.106821.3592
AT2G19870arabidopsis_thalianaAT2G19870.159.083247.708pistacia_veracds-EVM0004317.159.183747.7891
AT2G19870arabidopsis_thalianaAT2G19870.165.36559.9321brassica_napusCDY3589672.778866.7297
AT2G19870arabidopsis_thalianaAT2G19870.166.383760.2716brassica_napusCDX8274772.407465.7407
AT2G19870arabidopsis_thalianaAT2G19870.154.159644.652corchorus_capsularisOMO8270261.346250.5769
AT2G19870arabidopsis_thalianaAT2G19870.151.103641.2564oryza_meridionalisOMERI06G09040.158.220547.0019
AT2G19870arabidopsis_thalianaAT2G19870.183.361678.6078camelina_sativaCsa15g084510.1.cds184.075379.2808
AT2G19870arabidopsis_thalianaAT2G19870.184.889680.6452camelina_sativaCsa01g044660.1.cds184.033679.8319
AT2G19870arabidopsis_thalianaAT2G19870.173.514468.7606camelina_sativaCsa19g049030.1.cds173.265668.5279
AT2G19870arabidopsis_thalianaAT2G19870.148.387140.2377malus_domestica_goldenCDS:MD02G0055400.170.895558.9552
AT2G19870arabidopsis_thalianaAT2G19870.147.368440.5773malus_domestica_goldenCDS:MD15G0171800.178.370867.1348
AT2G19870arabidopsis_thalianaAT2G19870.154.668943.9728daucus_carotaKZM8391560.299648.5019
AT2G19870arabidopsis_thalianaAT2G19870.160.611248.5569rosa_chinensisPRQ4670858.813847.117
AT2G19870arabidopsis_thalianaAT2G19870.161.290347.5382juglans_regiacds.Jr10_20210_p160.367946.8227
AT2G19870arabidopsis_thalianaAT2G19870.152.122240.747nymphaea_colorataNC7G0277280.1:cds48.119137.6176
AT2G19870arabidopsis_thalianaAT2G19870.156.536545.5009vigna_angularisKOM5784059.677448.0287
AT2G19870arabidopsis_thalianaAT2G19870.150.933840.5773setaria_italicaKQL0691958.252446.4078
AT2G19870arabidopsis_thalianaAT2G19870.142.614631.0696physcomitrium_patensPAC:32906337.CDS.142.114130.7047
AT2G19870arabidopsis_thalianaAT2G19870.152.461843.2937vitis_viniferaVitvi02g04217_P00166.451654.8387
AT2G19870arabidopsis_thalianaAT2G19870.159.592547.5382vitis_viniferaVitvi11g00265_P00158.991647.0588
AT2G19870arabidopsis_thalianaAT2G19870.157.215644.4822cynara_cardunculusKVH9387137.278828.9823

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003729enables mRNA binding1IDAArabidopsis_thaliana(3702)Function
GO:0005739located_in mitochondrion1ISMArabidopsis_thaliana(3702)Component
GO:0006351acts_upstream_of_or_within DNA-templated transcription1IEAArabidopsis_thaliana(3702)Process
GO:0009507located_in chloroplast1HDAArabidopsis_thaliana(3702)Component
GO:0031167involved_in rRNA methylation1IEAArabidopsis_thaliana(3702)Process
GO:0044085acts_upstream_of_or_within cellular component biogenesis1IEAArabidopsis_thaliana(3702)Process
GO:0044281acts_upstream_of_or_within small molecule metabolic process1IEAArabidopsis_thaliana(3702)Process
GO:0048316acts_upstream_of_or_within seed development1IEAArabidopsis_thaliana(3702)Process

Expression