Description

Ensembl ID AT2G13540 Gene ID 815840 Accession -
Symbol ABH1 Alias - Full Name ARM repeat superfamily protein
Status Confidence Length 6183 bases Strand Plus strand
Position 2 : 5636884 - 5643066 RNA binding domain MIF4G_like , MIF4G_like_2 , MIF4G
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT2G13540 MIF4G_like_2 PF09090 1.8e-35 1
AT2G13540 MIF4G PF02854 4e-33 2
AT2G13540 MIF4G_like PF09088 3.3e-37 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
ABH1-201 AT2G13540 2969 848aa AT2G13540

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G13540

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT2G13540arabidopsis_thalianaAT2G13540.134.787719.3396chondrus_crispusCDF4115137.966521.1068
AT2G13540arabidopsis_thalianaAT2G13540.135.259420.283chlamydomonas_reinhardtiiPNW753642514.3813
AT2G13540arabidopsis_thalianaAT2G13540.171.698152.8302marchantia_polymorphaPTQ4838069.406451.1416
AT2G13540arabidopsis_thalianaAT2G13540.181.485866.3915papaver_somniferumRZC8085480.255565.3891
AT2G13540arabidopsis_thalianaAT2G13540.152.948143.75cannabis_sativa_femalecds.novel_model_5398_5bd9a17a81.636467.4545
AT2G13540arabidopsis_thalianaAT2G13540.123.46718.5142cannabis_sativa_femalecds.novel_model_5397_5bd9a17a83.263665.6904
AT2G13540arabidopsis_thalianaAT2G13540.184.43469.4576ficus_caricaFCD_00019162-RA:cds83.062668.3295
AT2G13540arabidopsis_thalianaAT2G13540.185.613272.0519theobroma_cacaoEOY3278784.027870.7176
AT2G13540arabidopsis_thalianaAT2G13540.180.424563.7972beta_vulgarisKMT1716979.487263.0536
AT2G13540arabidopsis_thalianaAT2G13540.183.018968.75cucumis_meloMELO3C015158.2.181.481567.4769
AT2G13540arabidopsis_thalianaAT2G13540.182.900968.3962cucumis_sativusKGN6651281.365767.1296
AT2G13540arabidopsis_thalianaAT2G13540.186.556670.7547populus_trichocarpaPotri.009G049200.1.v4.184.562269.1244
AT2G13540arabidopsis_thalianaAT2G13540.183.254767.8066solanum_lycopersicumSolyc10g005530.3.181.997766.7828
AT2G13540arabidopsis_thalianaAT2G13540.136.438718.8679caenorhabditis_elegansF37E3.1.138.721820.0501
AT2G13540arabidopsis_thalianaAT2G13540.181.132166.0377lactuca_sativacds-PLY71322.180.656565.6506
AT2G13540arabidopsis_thalianaAT2G13540.127.594314.8585ostreococcus_lucimarinusABO9694447.464525.5578
AT2G13540arabidopsis_thalianaAT2G13540.18.254724.71698ostreococcus_lucimarinusABO9694322.222212.6984
AT2G13540arabidopsis_thalianaAT2G13540.176.886859.7877eragrostis_curvulaTVU4706569.882154.3408
AT2G13540arabidopsis_thalianaAT2G13540.183.254768.2783citrullus_lanatusCla97C03G063210.181.524266.8591
AT2G13540arabidopsis_thalianaAT2G13540.180.424564.033vigna_radiataVradi04g04770.160.407448.0957
AT2G13540arabidopsis_thalianaAT2G13540.139.03330.1887vigna_radiataVradi04g04810.175.917458.7156
AT2G13540arabidopsis_thalianaAT2G13540.178.301962.8538amborella_trichopodaERN0980878.117662.7059
AT2G13540arabidopsis_thalianaAT2G13540.182.193466.2736vigna_unguiculataVigun01g077900.1.v1.281.140965.4249
AT2G13540arabidopsis_thalianaAT2G13540.183.962370.7547prunus_aviumPav_sc0000830.1_g420.1.mk:mrna74.47762.7615
AT2G13540arabidopsis_thalianaAT2G13540.183.018967.217phaseolus_vulgarisESW3363481.670566.1253
AT2G13540arabidopsis_thalianaAT2G13540.116.273612.9717asparagus_officinalisONK6290278.409162.5
AT2G13540arabidopsis_thalianaAT2G13540.178.301962.6179asparagus_officinalisONK6841877.119661.6725
AT2G13540arabidopsis_thalianaAT2G13540.135.377427.8302asparagus_officinalisONK6290168.965554.2529
AT2G13540arabidopsis_thalianaAT2G13540.182.547267.3349pisum_sativumPsat3g093920.1.cds81.018566.088
AT2G13540arabidopsis_thalianaAT2G13540.177.004760.6132brachypodium_distachyonKQK2171675.491359.422
AT2G13540arabidopsis_thalianaAT2G13540.183.608569.8113quercus_subercds-POE95971.182.250668.6775
AT2G13540arabidopsis_thalianaAT2G13540.174.292459.9057ananas_comosusAco001892.1.mrna177.873962.7936
AT2G13540arabidopsis_thalianaAT2G13540.199.292498.2311arabidopsis_lyratafgenesh2_kg.3__3010__AT2G13540.199.292498.2311
AT2G13540arabidopsis_thalianaAT2G13540.183.962370.5189quercus_lobataQL01p017999:mrna82.790769.5349
AT2G13540arabidopsis_thalianaAT2G13540.183.372668.5142capsicum_annuumPHT6951382.018667.4014
AT2G13540arabidopsis_thalianaAT2G13540.178.537763.7972lupinus_angustifoliusOIW2034081.318766.0562
AT2G13540arabidopsis_thalianaAT2G13540.171.81657.6651lupinus_angustifoliusOIW0336380.769264.8541
AT2G13540arabidopsis_thalianaAT2G13540.196.226491.6274eutrema_salsugineumESQ5113896.226491.6274
AT2G13540arabidopsis_thalianaAT2G13540.199.292498.3491arabidopsis_hallerig21308.t199.292498.3491
AT2G13540arabidopsis_thalianaAT2G13540.121.580217.3349cajanus_cajanC.cajan_17614.t85.116368.3721
AT2G13540arabidopsis_thalianaAT2G13540.148.113237.8538cajanus_cajanC.cajan_17616.t65.912851.8578
AT2G13540arabidopsis_thalianaAT2G13540.177.948161.3208setaria_viridisTKV9614174.269758.427
AT2G13540arabidopsis_thalianaAT2G13540.175.707659.434oryza_nivaraONIVA03G18250.170.240755.1422
AT2G13540arabidopsis_thalianaAT2G13540.182.193468.6321ipomoea_trilobaitb06g13190.t181.140967.7532
AT2G13540arabidopsis_thalianaAT2G13540.176.179260.0236oryza_glumipatulaOGLUM03G17640.171.777856.5556
AT2G13540arabidopsis_thalianaAT2G13540.177.358560.1415zea_maysZm00001eb016670_P00475.750658.8915
AT2G13540arabidopsis_thalianaAT2G13540.174.764258.6085lolium_perennecds.KYUSt_contig_49.2371.638456.1582
AT2G13540arabidopsis_thalianaAT2G13540.165.56645.6368chara_brauniiGBG6931845.387831.5918
AT2G13540arabidopsis_thalianaAT2G13540.195.28390.2123arabis_alpinaKFK3993695.170890.106
AT2G13540arabidopsis_thalianaAT2G13540.136.792518.1604ciona_savignyiENSCSAVP0000000895938.951319.226
AT2G13540arabidopsis_thalianaAT2G13540.176.415161.2028oryza_brachyanthaOB03G26800.174.826859.9307
AT2G13540arabidopsis_thalianaAT2G13540.183.962367.8066glycine_maxKRH0684582.502966.628
AT2G13540arabidopsis_thalianaAT2G13540.182.193466.5094glycine_maxKRG9468180.764865.3534
AT2G13540arabidopsis_thalianaAT2G13540.132.075516.6274cyanidioschyzon_merolaeCMJ189CT25.806513.3776
AT2G13540arabidopsis_thalianaAT2G13540.183.726469.8113corymbia_citriodoracds-KAF8041204.181.891668.2814
AT2G13540arabidopsis_thalianaAT2G13540.176.886860.1415aegilops_tauschiiAET4Gv20436700.171.727256.1056
AT2G13540arabidopsis_thalianaAT2G13540.176.886860.1415triticum_urartuTuG1812G0400001837.01.T0171.412955.8598
AT2G13540arabidopsis_thalianaAT2G13540.174.056658.2547oryza_longistaminataKN540072.1_FGP00574.761958.8095
AT2G13540arabidopsis_thalianaAT2G13540.175.471761.7925fraxinus_excelsiorFRAEX38873_v2_000089040.1.cds82.474267.5258
AT2G13540arabidopsis_thalianaAT2G13540.176.53359.9057avena_sativa_sangAVESA.00010b.r2.5AG0808180.1.CDS74.855858.5928
AT2G13540arabidopsis_thalianaAT2G13540.176.650959.9057avena_sativa_sangAVESA.00010b.r2.4CG1317380.1.CDS74.971258.5928
AT2G13540arabidopsis_thalianaAT2G13540.176.415159.9057avena_sativa_sangAVESA.00010b.r2.5DG0999560.1.CDS74.740558.5928
AT2G13540arabidopsis_thalianaAT2G13540.135.495328.8915musa_acuminataMa05_p07740.180.053265.1596
AT2G13540arabidopsis_thalianaAT2G13540.143.160433.3726musa_acuminataMa05_p07750.171.206255.0584
AT2G13540arabidopsis_thalianaAT2G13540.177.476461.2028oryza_glaberrimaORGLA03G0164200.175.691259.7926
AT2G13540arabidopsis_thalianaAT2G13540.174.646259.1981oryza_glaberrimaORGLA07G0262200.175.44759.8331
AT2G13540arabidopsis_thalianaAT2G13540.176.53360.0236hordeum_vulgareHORVU.MOREX.r3.4HG0377830.175.202858.9803
AT2G13540arabidopsis_thalianaAT2G13540.176.415159.434triticum_turgidumTRITD4Bv1G095040.169.752454.2519
AT2G13540arabidopsis_thalianaAT2G13540.175.471759.0802triticum_turgidumTRITD4Av1G074820.460.150447.0865
AT2G13540arabidopsis_thalianaAT2G13540.176.886860.0236triticum_turgidumTRITD6Bv1G014880.475.550458.9803
AT2G13540arabidopsis_thalianaAT2G13540.177.476460.3774panicum_halliiPUZ4111575.778559.0542
AT2G13540arabidopsis_thalianaAT2G13540.177.476460.7311echinochloa_crusgalliscaffold22.558.cds75.866159.4688
AT2G13540arabidopsis_thalianaAT2G13540.177.476460.8491echinochloa_crusgalliscaffold18.556.cds75.866159.5843
AT2G13540arabidopsis_thalianaAT2G13540.177.122660.2594echinochloa_crusgalliscaffold74.377.cds75.519659.0069
AT2G13540arabidopsis_thalianaAT2G13540.183.490668.6321actinidia_chinensisPSR9557681.944467.3611
AT2G13540arabidopsis_thalianaAT2G13540.121.226417.3349citrus_clementinaESR5945983.720968.3721
AT2G13540arabidopsis_thalianaAT2G13540.163.443453.184citrus_clementinaESR5945482.896869.4915
AT2G13540arabidopsis_thalianaAT2G13540.175.825559.7877oryza_indicaBGIOSGA012609-PA75.204759.2982
AT2G13540arabidopsis_thalianaAT2G13540.167.099145.9906selaginella_moellendorffiiEFJ1678865.628644.9827
AT2G13540arabidopsis_thalianaAT2G13540.163.915144.3396selaginella_moellendorffiiEFJ0550164.523844.7619
AT2G13540arabidopsis_thalianaAT2G13540.177.476461.2028oryza_sativaOs03t0347200-0175.778559.8616
AT2G13540arabidopsis_thalianaAT2G13540.139.386822.0519homo_sapiensENSP0000036428942.278523.6709
AT2G13540arabidopsis_thalianaAT2G13540.176.53359.9057triticum_aestivumTraesCS6B02G066700.175.202858.8644
AT2G13540arabidopsis_thalianaAT2G13540.176.768960.0236triticum_aestivumTraesCS4A02G138800.175.434558.9803
AT2G13540arabidopsis_thalianaAT2G13540.176.650959.6698triticum_aestivumTraesCS4B02G158000.175.318758.6327
AT2G13540arabidopsis_thalianaAT2G13540.176.886860.1415triticum_aestivumTraesCS4D02G167200.175.550459.0962
AT2G13540arabidopsis_thalianaAT2G13540.177.476461.2028oryza_rufipogonORUFI03G17820.175.778559.8616
AT2G13540arabidopsis_thalianaAT2G13540.176.886860.1415secale_cerealeSECCE4Rv1G0234350.175.550459.0962
AT2G13540arabidopsis_thalianaAT2G13540.185.731172.4057gossypium_raimondiiKJB8353084.143571.0648
AT2G13540arabidopsis_thalianaAT2G13540.181.603866.8632helianthus_annuusmRNA:HanXRQr2_Chr11g048401181.030466.3934
AT2G13540arabidopsis_thalianaAT2G13540.174.646258.8443oryza_punctataOPUNC03G16570.174.646258.8443
AT2G13540arabidopsis_thalianaAT2G13540.173.113256.7217eragrostis_tefEt_4B_036770.CDS74.879258.0918
AT2G13540arabidopsis_thalianaAT2G13540.173.349156.9575eragrostis_tefEt_4A_032588.CDS75.120858.3333
AT2G13540arabidopsis_thalianaAT2G13540.181.721766.1557medicago_truncatulaAES8070180.208364.9306
AT2G13540arabidopsis_thalianaAT2G13540.128.301920.5189saccharum_spontaneumSspon.01G0009690-2B-mRNA-172.507652.568
AT2G13540arabidopsis_thalianaAT2G13540.178.18461.2028sorghum_bicolorOQU9260476.470659.8616
AT2G13540arabidopsis_thalianaAT2G13540.176.768959.9057triticum_dicoccoidesTRIDC4AG019620.475.434558.8644
AT2G13540arabidopsis_thalianaAT2G13540.176.53359.6698triticum_dicoccoidesTRIDC4BG029600.175.202858.6327
AT2G13540arabidopsis_thalianaAT2G13540.176.53359.9057triticum_dicoccoidesTRIDC6BG008660.275.202858.8644
AT2G13540arabidopsis_thalianaAT2G13540.183.018966.6274coffea_canephoraCDP1357281.670565.5452
AT2G13540arabidopsis_thalianaAT2G13540.185.495370.8726manihot_esculentaOAY4847783.429269.16
AT2G13540arabidopsis_thalianaAT2G13540.182.547268.0424kalanchoe_fedtschenkoiKaladp0037s0287.1.v1.181.300867.0151
AT2G13540arabidopsis_thalianaAT2G13540.182.547268.2783trifolium_pratenseTp57577_TGAC_v2_mRNA1808780.831466.8591
AT2G13540arabidopsis_thalianaAT2G13540.194.339690.566brassica_rapa_ro18A03p048080.1_BraROA.194.674690.8876
AT2G13540arabidopsis_thalianaAT2G13540.140.094331.7217eucalyptus_grandisKCW8718979.625362.9977
AT2G13540arabidopsis_thalianaAT2G13540.131.721727.1226eucalyptus_grandisKCW8719182.26370.3364
AT2G13540arabidopsis_thalianaAT2G13540.151.53340.9198dioscorea_rotundataDRNTG_10813.178.035761.9643
AT2G13540arabidopsis_thalianaAT2G13540.125.943420.0472dioscorea_rotundataDRNTG_30388.173.578656.8562
AT2G13540arabidopsis_thalianaAT2G13540.183.844370.8726prunus_persicaONI1400482.196569.4798
AT2G13540arabidopsis_thalianaAT2G13540.176.415159.9057avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0000355.272.240856.6332
AT2G13540arabidopsis_thalianaAT2G13540.176.53359.9057avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0000755.371.633656.0706
AT2G13540arabidopsis_thalianaAT2G13540.176.650959.9057avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0003048.271.823256.1326
AT2G13540arabidopsis_thalianaAT2G13540.161.202847.1698digitaria_exilisDexi9B01G0034600.1:cds72.284155.7103
AT2G13540arabidopsis_thalianaAT2G13540.160.96747.2877digitaria_exilisDexi9A01G0035940.1:cds72.005655.8496
AT2G13540arabidopsis_thalianaAT2G13540.177.476461.3208oryza_barthiiOBART03G17200.175.778559.9769
AT2G13540arabidopsis_thalianaAT2G13540.194.339690.4481brassica_oleraceaBo3g087110.194.674690.7692
AT2G13540arabidopsis_thalianaAT2G13540.159.31654.717brassica_oleraceaBo9g022460.177.265771.275
AT2G13540arabidopsis_thalianaAT2G13540.183.844370.7547prunus_dulcisVVA3699763.425553.5236
AT2G13540arabidopsis_thalianaAT2G13540.148.820840.684prunus_dulcisVVA4104080.077466.7311
AT2G13540arabidopsis_thalianaAT2G13540.132.547216.2736galdieria_sulphurariaEME2722833.699616.8498
AT2G13540arabidopsis_thalianaAT2G13540.174.764261.7925corylus_avellanaCav10g03170.t178.465364.8515
AT2G13540arabidopsis_thalianaAT2G13540.172.995357.783leersia_perrieriLPERR03G15000.175.857860.049
AT2G13540arabidopsis_thalianaAT2G13540.181.367967.3349olea_europaeaOE9A014461C181.272167.2556
AT2G13540arabidopsis_thalianaAT2G13540.131.603814.5047saccharomyces_cerevisiaeYMR125W31.126614.2857
AT2G13540arabidopsis_thalianaAT2G13540.185.259469.8113pistacia_veracds-EVM0002773.181.8867.0442
AT2G13540arabidopsis_thalianaAT2G13540.139.858521.6981drosophila_melanogasterFBpp007065242.2523
AT2G13540arabidopsis_thalianaAT2G13540.134.669818.1604drosophila_melanogasterFBpp011217339.043820.4515
AT2G13540arabidopsis_thalianaAT2G13540.193.985890.3302brassica_napusCDX9311594.319590.6509
AT2G13540arabidopsis_thalianaAT2G13540.125.353823.9387brassica_napusCDX814478681.2
AT2G13540arabidopsis_thalianaAT2G13540.139.858537.7358brassica_napusCDX8144590.616685.7909
AT2G13540arabidopsis_thalianaAT2G13540.114.386813.5613brassica_napusCDX8144694.573689.1473
AT2G13540arabidopsis_thalianaAT2G13540.186.202872.7594corchorus_capsularisOMO5984484.802871.5777
AT2G13540arabidopsis_thalianaAT2G13540.177.476461.2028oryza_meridionalisOMERI03G15330.275.778559.8616
AT2G13540arabidopsis_thalianaAT2G13540.198.231195.7547camelina_sativaCsa15g067870.198.115495.6419
AT2G13540arabidopsis_thalianaAT2G13540.188.207685.8491camelina_sativaCsa01g036320.197.395894.7917
AT2G13540arabidopsis_thalianaAT2G13540.197.877495.283camelina_sativaCsa19g043310.197.762195.1708
AT2G13540arabidopsis_thalianaAT2G13540.142.806636.7925malus_domestica_goldenmRNA:MD11G015560086.634874.463
AT2G13540arabidopsis_thalianaAT2G13540.184.31669.9292malus_domestica_goldenmRNA:MD03G013890082.65968.5549
AT2G13540arabidopsis_thalianaAT2G13540.163.325552.5943malus_domestica_goldenmRNA:MD11G015090079.910766.369
AT2G13540arabidopsis_thalianaAT2G13540.181.721766.8632daucus_carotaKZN0090079.019464.6522
AT2G13540arabidopsis_thalianaAT2G13540.184.31670.9906rosa_chinensisPRQ3286382.754669.6759
AT2G13540arabidopsis_thalianaAT2G13540.183.136868.3962juglans_regiacds.Jr14_18940_p181.597267.1296
AT2G13540arabidopsis_thalianaAT2G13540.177.476461.0849nymphaea_colorataNC5G0159800.1:cds76.573460.373
AT2G13540arabidopsis_thalianaAT2G13540.131.957523.9387vigna_angularisKOM3833476.123657.0225
AT2G13540arabidopsis_thalianaAT2G13540.122.287717.8066vigna_angularisKOM3833381.818265.368
AT2G13540arabidopsis_thalianaAT2G13540.178.06661.4387setaria_italicaKQK9090874.633658.7373
AT2G13540arabidopsis_thalianaAT2G13540.170.28351.7689physcomitrium_patensPAC:32952920.CDS.168.192250.2288
AT2G13540arabidopsis_thalianaAT2G13540.170.400951.8868physcomitrium_patensPAC:32977315.CDS.167.763949.9432
AT2G13540arabidopsis_thalianaAT2G13540.184.669870.5189vitis_viniferaVitvi06g01268_P00183.005869.1329
AT2G13540arabidopsis_thalianaAT2G13540.171.81658.6085cynara_cardunculusKVI1025976.12562.125

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000339enables RNA cap binding1IDAArabidopsis_thaliana(3702)Function
GO:0000394acts_upstream_of_or_within RNA splicing, via endonucleolytic cleavage and ligation1IMPArabidopsis_thaliana(3702)Process
GO:0005515enables protein binding1IPIArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus2IDA,ISMArabidopsis_thaliana(3702)Component
GO:0005739located_in mitochondrion1HDAArabidopsis_thaliana(3702)Component
GO:0005829NOT located_in cytosol1RCAArabidopsis_thaliana(3702)Component
GO:0009737acts_upstream_of_or_within response to abscisic acid1IMPArabidopsis_thaliana(3702)Process
GO:0031053acts_upstream_of_or_within primary miRNA processing1IMPArabidopsis_thaliana(3702)Process
GO:0048574acts_upstream_of_or_within long-day photoperiodism, flowering1IMPArabidopsis_thaliana(3702)Process
GO:0051607acts_upstream_of_or_within defense response to virus1IMPArabidopsis_thaliana(3702)Process
GO:1905392acts_upstream_of_or_within plant organ morphogenesis1NASArabidopsis_thaliana(3702)Process

Expression