Description

Ensembl ID AT1G76050 Gene ID 843937 Accession -
Symbol AT1G76050 Alias - Full Name Pseudouridine synthase family protein
Status Confidence Length 2444 bases Strand Plus strand
Position 1 : 28540784 - 28543227 RNA binding domain PseudoU_synth_2 , S4
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G76050 S4 PF01479 2.2e-09 1
AT1G76050 S4 PF01479 3.4e-09 2
AT1G76050 PseudoU_synth_2 PF00849 1.1e-29 3
AT1G76050 PseudoU_synth_2 PF00849 1.1e-19 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT1G76050-202 AT1G76050 1600 313aa AT1G76050

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G76050arabidopsis_thalianaAT4G21770.122.881413.3475arabidopsis_thalianaAT1G76050.225.116314.6512
AT1G76050arabidopsis_thalianaAT5G51140.230.243916.5854arabidopsis_thalianaAT1G76050.228.837215.814
AT1G76050arabidopsis_thalianaAT1G78910.132.845216.5272arabidopsis_thalianaAT1G76050.236.511618.3721
AT1G76050arabidopsis_thalianaAT3G52260.331.2518.5096arabidopsis_thalianaAT1G76050.230.232617.907
AT1G76050arabidopsis_thalianaAT3G19440.132.494818.4486arabidopsis_thalianaAT1G76050.236.046520.4651
AT1G76050arabidopsis_thalianaAT1G56345.137.267121.4286arabidopsis_thalianaAT1G76050.227.90716.0465

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G76050arabidopsis_thalianaAT1G76050.223.720913.2558chondrus_crispusCDF7759534.228219.1275
AT1G76050arabidopsis_thalianaAT1G76050.255.81441.6279chlamydomonas_reinhardtiiPNW8624951.612938.4946
AT1G76050arabidopsis_thalianaAT1G76050.259.534946.0465marchantia_polymorphaPTQ3305256.888944
AT1G76050arabidopsis_thalianaAT1G76050.270.930257.907papaver_somniferumRZC4852969.318256.5909
AT1G76050arabidopsis_thalianaAT1G76050.270.697757.907papaver_somniferumRZC5498369.090956.5909
AT1G76050arabidopsis_thalianaAT1G76050.274.651263.2558cannabis_sativa_femalecds.evm.model.01.234973.455462.2426
AT1G76050arabidopsis_thalianaAT1G76050.273.023362.093ficus_caricaFCD_00003603-RA:cds71.040760.4072
AT1G76050arabidopsis_thalianaAT1G76050.273.023361.3953theobroma_cacaoEOY1512572.517360.97
AT1G76050arabidopsis_thalianaAT1G76050.239.534932.093theobroma_cacaoEOY1512353.12543.125
AT1G76050arabidopsis_thalianaAT1G76050.268.372155.5814beta_vulgarisKMS9538469.833756.7696
AT1G76050arabidopsis_thalianaAT1G76050.266.511656.0465cucumis_meloMELO3C011342.2.171.560.25
AT1G76050arabidopsis_thalianaAT1G76050.271.395359.3023cucumis_sativusKGN6226871.064859.0278
AT1G76050arabidopsis_thalianaAT1G76050.273.953562.5581populus_trichocarpaPotri.002G016800.1.v4.176.626564.8193
AT1G76050arabidopsis_thalianaAT1G76050.225.116311.3953caenorhabditis_elegansZK287.7.127.90712.6615
AT1G76050arabidopsis_thalianaAT1G76050.219.069811.3953ostreococcus_lucimarinusABO9807037.614722.4771
AT1G76050arabidopsis_thalianaAT1G76050.271.395359.7674eragrostis_curvulaTVU0757069.45758.1448
AT1G76050arabidopsis_thalianaAT1G76050.271.627959.7674citrullus_lanatusCla97C08G157610.171.461759.6288
AT1G76050arabidopsis_thalianaAT1G76050.270.697757.6744vigna_radiataVradi05g14100.137.577330.6551
AT1G76050arabidopsis_thalianaAT1G76050.266.046555.1163amborella_trichopodaERM9626762.831952.4336
AT1G76050arabidopsis_thalianaAT1G76050.272.09358.8372vigna_unguiculataVigun09g256600.1.v1.269.351256.5996
AT1G76050arabidopsis_thalianaAT1G76050.270.465158.3721phaseolus_vulgarisESW0811366.157254.8035
AT1G76050arabidopsis_thalianaAT1G76050.273.255859.3023pisum_sativumPsat5g012400.1.cds7056.6667
AT1G76050arabidopsis_thalianaAT1G76050.248.139539.7674brachypodium_distachyonKQK1671866.990355.3398
AT1G76050arabidopsis_thalianaAT1G76050.270.930261.3953ananas_comosusAco009333.1.mrna170.930261.3953
AT1G76050arabidopsis_thalianaAT1G76050.275.348863.2558quercus_lobataQL02p012883:mrna74.311962.3853
AT1G76050arabidopsis_thalianaAT1G76050.272.09360capsicum_annuumPHT8498866.239355.1282
AT1G76050arabidopsis_thalianaAT1G76050.269.534957.4419lupinus_angustifoliusOIV9630235.384629.2308
AT1G76050arabidopsis_thalianaAT1G76050.291.860585.814eutrema_salsugineumESQ2753091.435285.4167
AT1G76050arabidopsis_thalianaAT1G76050.294.651292.3256arabidopsis_hallerig01155.t193.778891.4747
AT1G76050arabidopsis_thalianaAT1G76050.273.488460.4651cajanus_cajanC.cajan_18842.t70.222257.7778
AT1G76050arabidopsis_thalianaAT1G76050.272.325659.5349solanum_tuberosumPGSC0003DMT40002558372.157859.3968
AT1G76050arabidopsis_thalianaAT1G76050.268.604758.8372setaria_viridisTKW2347867.505757.8947
AT1G76050arabidopsis_thalianaAT1G76050.269.767459.3023oryza_nivaraONIVA06G30150.265.934156.044
AT1G76050arabidopsis_thalianaAT1G76050.258.604748.8372ipomoea_trilobaitb15g04060.t170.985959.1549
AT1G76050arabidopsis_thalianaAT1G76050.269.767459.3023oryza_glumipatulaOGLUM06G29010.365.934156.044
AT1G76050arabidopsis_thalianaAT1G76050.269.302357.907zea_maysZm00001eb272250_P00267.573756.4626
AT1G76050arabidopsis_thalianaAT1G76050.269.302358.1395lolium_perennecds.KYUSt_chr7.130366.369755.6793
AT1G76050arabidopsis_thalianaAT1G76050.289.302382.7907arabis_alpinaKFK4204088.888982.4074
AT1G76050arabidopsis_thalianaAT1G76050.234.418617.2093ciona_savignyiENSCSAVP0000000152228.737914.3689
AT1G76050arabidopsis_thalianaAT1G76050.285.348877.2093brassica_junceacds.BjuB03g13720S81.194773.4513
AT1G76050arabidopsis_thalianaAT1G76050.283.255875.814brassica_junceacds.BjuA07g35190S85.851378.1775
AT1G76050arabidopsis_thalianaAT1G76050.27058.8372oryza_brachyanthaOB06G35410.168.099557.2398
AT1G76050arabidopsis_thalianaAT1G76050.263.023350.9302glycine_maxKRH5166069.487256.1538
AT1G76050arabidopsis_thalianaAT1G76050.273.953560.6977glycine_maxKRH6098670.666758
AT1G76050arabidopsis_thalianaAT1G76050.226.511617.6744cyanidioschyzon_merolaeCMD024CT27.403818.2692
AT1G76050arabidopsis_thalianaAT1G76050.273.255862.3256corymbia_citriodoracds-KAF8019680.168.627458.3878
AT1G76050arabidopsis_thalianaAT1G76050.267.441957.907aegilops_tauschiiAET7Gv21293700.269.37859.5694
AT1G76050arabidopsis_thalianaAT1G76050.27058.3721triticum_urartuTuG1812G0700005683.01.T0167.640456.4045
AT1G76050arabidopsis_thalianaAT1G76050.238.604732.5581oryza_longistaminataKN539091.1_FGP01462.40652.6316
AT1G76050arabidopsis_thalianaAT1G76050.255.81450.4651fraxinus_excelsiorFRAEX38873_v2_000094850.2.cds76.190568.8889
AT1G76050arabidopsis_thalianaAT1G76050.269.069858.3721avena_sativa_sangAVESA.00010b.r2.2AG0260630.1.CDS6655.7778
AT1G76050arabidopsis_thalianaAT1G76050.269.069857.907avena_sativa_sangAVESA.00010b.r2.7DG1344270.1.CDS6655.3333
AT1G76050arabidopsis_thalianaAT1G76050.269.534958.3721avena_sativa_sangAVESA.00010b.r2.6CG1147940.1.CDS66.890456.1521
AT1G76050arabidopsis_thalianaAT1G76050.270.232657.907musa_acuminataMa11_p06900.268.636456.5909
AT1G76050arabidopsis_thalianaAT1G76050.269.767459.0698oryza_glaberrimaORGLA06G0232900.167.415757.0787
AT1G76050arabidopsis_thalianaAT1G76050.245.581439.5349hordeum_vulgareHORVU.MOREX.r3.7HG0747270.168.292759.2334
AT1G76050arabidopsis_thalianaAT1G76050.270.232658.6047triticum_turgidumTRITD7Av1G271460.267.865256.6292
AT1G76050arabidopsis_thalianaAT1G76050.221.860518.1395triticum_turgidumTRITD7Bv1G224120.167.142955.7143
AT1G76050arabidopsis_thalianaAT1G76050.268.604759.0698panicum_halliiPUZ5906966.292157.0787
AT1G76050arabidopsis_thalianaAT1G76050.269.069859.0698echinochloa_crusgalliscaffold225.91.cds64.847255.4585
AT1G76050arabidopsis_thalianaAT1G76050.266.976757.4419echinochloa_crusgalliscaffold9.559.cds60.504251.8908
AT1G76050arabidopsis_thalianaAT1G76050.260.930251.8605echinochloa_crusgalliscaffold60.108.cds68.586458.377
AT1G76050arabidopsis_thalianaAT1G76050.273.023361.3953actinidia_chinensisPSS3122072.685261.1111
AT1G76050arabidopsis_thalianaAT1G76050.254.883743.9535actinidia_chinensisPSR9955259.898547.9695
AT1G76050arabidopsis_thalianaAT1G76050.259.069850.9302citrus_clementinaESR4849574.486864.2229
AT1G76050arabidopsis_thalianaAT1G76050.269.767459.3023oryza_indicaBGIOSGA020523-PA67.415757.3034
AT1G76050arabidopsis_thalianaAT1G76050.253.953544.8837selaginella_moellendorffiiEFJ2107555.106945.8432
AT1G76050arabidopsis_thalianaAT1G76050.225.81421.8605selaginella_moellendorffiiEFJ2107358.115249.2147
AT1G76050arabidopsis_thalianaAT1G76050.269.534959.0698oryza_sativaOs06t0717400-0167.19157.0787
AT1G76050arabidopsis_thalianaAT1G76050.231.395317.4419homo_sapiensENSP0000029831735.80919.8939
AT1G76050arabidopsis_thalianaAT1G76050.220.465113.9535homo_sapiensENSP0000000726428.205119.2308
AT1G76050arabidopsis_thalianaAT1G76050.270.232658.6047triticum_aestivumTraesCS7A02G534400.167.865256.6292
AT1G76050arabidopsis_thalianaAT1G76050.269.302358.3721triticum_aestivumTraesCS7D02G521700.167.420856.7873
AT1G76050arabidopsis_thalianaAT1G76050.270.232658.8372triticum_aestivumTraesCS7B02G451500.167.865256.8539
AT1G76050arabidopsis_thalianaAT1G76050.268.604757.907oryza_rufipogonORUFI06G29540.166.143555.8296
AT1G76050arabidopsis_thalianaAT1G76050.270.232658.3721secale_cerealeSECCE6Rv1G0451130.167.71356.278
AT1G76050arabidopsis_thalianaAT1G76050.271.860556.9767helianthus_annuusmRNA:HanXRQr2_Chr05g021487169.438255.0562
AT1G76050arabidopsis_thalianaAT1G76050.269.302359.0698oryza_punctataOPUNC06G25260.166.966357.0787
AT1G76050arabidopsis_thalianaAT1G76050.222.558118.8372oryza_punctataOPUNC06G25240.168.309957.0423
AT1G76050arabidopsis_thalianaAT1G76050.270.465159.5349eragrostis_tefEt_2A_017487.CDS54.594646.1261
AT1G76050arabidopsis_thalianaAT1G76050.271.395360.6977eragrostis_tefEt_2B_021507.CDS68.834158.5202
AT1G76050arabidopsis_thalianaAT1G76050.271.860559.3023medicago_truncatulaAES7407067.763255.9211
AT1G76050arabidopsis_thalianaAT1G76050.269.302358.6047saccharum_spontaneumSspon.08G0001340-1A-mRNA-1:cds66.222256
AT1G76050arabidopsis_thalianaAT1G76050.27058.8372saccharum_spontaneumSspon.08G0001340-2C-mRNA-1:cds68.25457.3696
AT1G76050arabidopsis_thalianaAT1G76050.270.232659.0698saccharum_spontaneumSspon.08G0001140-2B-mRNA-1:cds68.480757.5964
AT1G76050arabidopsis_thalianaAT1G76050.270.232659.0698saccharum_spontaneumSspon.08G0001140-3D-mRNA-1:cds66.519855.9471
AT1G76050arabidopsis_thalianaAT1G76050.269.767458.8372saccharum_spontaneumSspon.08G0001340-1P-mRNA-1:cds66.371755.9734
AT1G76050arabidopsis_thalianaAT1G76050.269.767458.6047sorghum_bicolorEER9040168.027257.1429
AT1G76050arabidopsis_thalianaAT1G76050.259.069851.1628triticum_dicoccoidesTRIDC7AG074470.971.954762.3229
AT1G76050arabidopsis_thalianaAT1G76050.270.930259.0698coffea_canephoraCDP0734769.004557.4661
AT1G76050arabidopsis_thalianaAT1G76050.275.116362.7907manihot_esculentaOAY4662072.584360.6742
AT1G76050arabidopsis_thalianaAT1G76050.271.162858.3721kalanchoe_fedtschenkoiKaladp0068s0355.1.v1.170.183557.5688
AT1G76050arabidopsis_thalianaAT1G76050.271.860558.3721trifolium_pratenseTp57577_TGAC_v2_mRNA3953968.061755.2863
AT1G76050arabidopsis_thalianaAT1G76050.283.255875.5814brassica_rapa_ro18A07p048610.1_BraROA.178.854671.5859
AT1G76050arabidopsis_thalianaAT1G76050.274.18663.0233eucalyptus_grandisKCW7050569.047658.658
AT1G76050arabidopsis_thalianaAT1G76050.247.209339.7674dioscorea_rotundataDRNTG_00131.169.520558.5616
AT1G76050arabidopsis_thalianaAT1G76050.248.372140.6977avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0002728.164.797554.5171
AT1G76050arabidopsis_thalianaAT1G76050.269.534958.3721avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0000083.163.61753.4043
AT1G76050arabidopsis_thalianaAT1G76050.270.697757.907chenopodium_quinoaAUR62013887-RA:cds70.370457.6389
AT1G76050arabidopsis_thalianaAT1G76050.262.790749.5349chenopodium_quinoaAUR62036707-RA:cds58.064545.8064
AT1G76050arabidopsis_thalianaAT1G76050.223.255818.1395digitaria_exilisDexi4B01G0023010.1:cds62.548.75
AT1G76050arabidopsis_thalianaAT1G76050.269.767458.6047digitaria_exilisDexi4A01G0023580.1:cds66.371755.7522
AT1G76050arabidopsis_thalianaAT1G76050.266.744257.2093oryza_barthiiOBART06G27590.269.323759.4203
AT1G76050arabidopsis_thalianaAT1G76050.283.255876.5116brassica_oleraceaBo6g120050.185.645978.7081
AT1G76050arabidopsis_thalianaAT1G76050.223.953515.1163galdieria_sulphurariaEME3036138.148124.0741
AT1G76050arabidopsis_thalianaAT1G76050.261.627951.3953leersia_perrieriLPERR06G23130.163.549252.9976
AT1G76050arabidopsis_thalianaAT1G76050.272.09361.1628nicotiana_attenuataOIT0396571.925861.0209
AT1G76050arabidopsis_thalianaAT1G76050.272.09362.5581olea_europaeaOE9A081543C467.099658.2251
AT1G76050arabidopsis_thalianaAT1G76050.272.325662.7907olea_europaeaOE9A094329C170.681861.3636
AT1G76050arabidopsis_thalianaAT1G76050.272.09360.9302pistacia_veracds-EVM0003929.173.809562.381
AT1G76050arabidopsis_thalianaAT1G76050.283.255875.814brassica_napusCDY6681484.235376.7059
AT1G76050arabidopsis_thalianaAT1G76050.283.255876.5116brassica_napusCDX7322079.910773.4375
AT1G76050arabidopsis_thalianaAT1G76050.273.023361.6279corchorus_capsularisOMO8735772.685261.3426
AT1G76050arabidopsis_thalianaAT1G76050.27059.0698oryza_meridionalisOMERI06G27630.265.864355.5799
AT1G76050arabidopsis_thalianaAT1G76050.295.116391.3953camelina_sativaCsa09g080740.194.02390.3448
AT1G76050arabidopsis_thalianaAT1G76050.270.232666.5116camelina_sativaCsa16g040160.190.963986.1446
AT1G76050arabidopsis_thalianaAT1G76050.293.953591.1628camelina_sativaCsa07g047550.193.735590.9513
AT1G76050arabidopsis_thalianaAT1G76050.269.767456.7442daucus_carotaKZM8969669.930156.8765
AT1G76050arabidopsis_thalianaAT1G76050.275.116363.2558juglans_regiacds.Jr11_19360_p172.421560.9865
AT1G76050arabidopsis_thalianaAT1G76050.24032.7907juglans_regiacds.Jr11_19390_p164.419552.809
AT1G76050arabidopsis_thalianaAT1G76050.261.395350.4651juglans_regiacds.Jr11_19380_p164.547753.0562
AT1G76050arabidopsis_thalianaAT1G76050.272.325660.2326juglans_regiacds.Jr11_19370_p168.052556.674
AT1G76050arabidopsis_thalianaAT1G76050.262.790749.7674nymphaea_colorataNC5G0267820.1:cds56.722744.958
AT1G76050arabidopsis_thalianaAT1G76050.265.116353.2558nymphaea_colorataNC9G0274250.1:cds60.475249.46
AT1G76050arabidopsis_thalianaAT1G76050.270.930258.3721vigna_angularisKOM5168968.080456.0268
AT1G76050arabidopsis_thalianaAT1G76050.269.069859.0698setaria_italicaKQL1225067.963458.1236
AT1G76050arabidopsis_thalianaAT1G76050.260.465146.2791physcomitrium_patensPp3c21_5880V3.158.165544.519
AT1G76050arabidopsis_thalianaAT1G76050.272.325661.3953vitis_viniferaVitvi18g00173_P00171.824560.97
AT1G76050arabidopsis_thalianaAT1G76050.270.697757.907cynara_cardunculusKVI0729369.885157.2414

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0009507located_in chloroplast1ISMArabidopsis_thaliana(3702)Component
GO:0009982enables pseudouridine synthase activity1TASArabidopsis_thaliana(3702)Function

Expression