Description

Ensembl ID AT1G64810 Gene ID 842789 Accession -
Symbol APO1 Alias - Full Name APO RNA-binding protein (DUF794)
Status Confidence Length 2024 bases Strand Plus strand
Position 1 : 24086558 - 24088581 RNA binding domain APO_RNA-bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G64810 APO_RNA-bind PF05634 3.5e-126 1
AT1G64810 APO_RNA-bind PF05634 3.5e-126 2
AT1G64810 APO_RNA-bind PF05634 4.3e-126 3
AT1G64810 APO_RNA-bind PF05634 4.3e-126 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
APO1-202 AT1G64810 1815 460aa AT1G64810

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G64810arabidopsis_thalianaAT3G21740.149.258233.8279arabidopsis_thalianaAT1G64810.236.08724.7826
AT1G64810arabidopsis_thalianaAT5G57930.255.530539.2777arabidopsis_thalianaAT1G64810.253.478337.8261
AT1G64810arabidopsis_thalianaAT5G61930.157.213937.3134arabidopsis_thalianaAT1G64810.25032.6087

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G64810arabidopsis_thalianaAT1G64810.268.478355.6522papaver_somniferumRZC4597872.247758.7156
AT1G64810arabidopsis_thalianaAT1G64810.271.739157.1739cannabis_sativa_femalecds.evm.model.02.312263.829850.8704
AT1G64810arabidopsis_thalianaAT1G64810.27560.8696ficus_caricaFCD_00005801-RA:cds77.702763.0631
AT1G64810arabidopsis_thalianaAT1G64810.273.478362.1739theobroma_cacaoEOY1334776.64464.8526
AT1G64810arabidopsis_thalianaAT1G64810.269.782656.5217beta_vulgarisKMT0980968.443555.4371
AT1G64810arabidopsis_thalianaAT1G64810.272.173958.0435cucumis_meloMELO3C026398.2.174.943660.2709
AT1G64810arabidopsis_thalianaAT1G64810.272.173958.0435cucumis_sativusKGN5497174.943660.2709
AT1G64810arabidopsis_thalianaAT1G64810.273.260959.7826populus_trichocarpaPotri.016G001400.8.v4.177.471363.2184
AT1G64810arabidopsis_thalianaAT1G64810.269.782657.1739solanum_lycopersicumSolyc08g080250.3.161.494350.3831
AT1G64810arabidopsis_thalianaAT1G64810.267.173956.087lactuca_sativacds-PLY91415.168.819657.461
AT1G64810arabidopsis_thalianaAT1G64810.265.434851.7391eragrostis_curvulaTVU1575771.666756.6667
AT1G64810arabidopsis_thalianaAT1G64810.265.434851.7391eragrostis_curvulaTVU1574671.496456.5321
AT1G64810arabidopsis_thalianaAT1G64810.271.521757.6087citrullus_lanatusCla97C11G222670.174.603260.0907
AT1G64810arabidopsis_thalianaAT1G64810.270.869658.6957vigna_radiataVradi01g06680.174.259761.5034
AT1G64810arabidopsis_thalianaAT1G64810.240.869632.6087amborella_trichopodaERN1115568.115954.3478
AT1G64810arabidopsis_thalianaAT1G64810.270.217458.6957vigna_unguiculataVigun04g167900.1.v1.271.460259.7345
AT1G64810arabidopsis_thalianaAT1G64810.215.217410.8696vigna_unguiculataVigun05g125150.1.v1.279.545556.8182
AT1G64810arabidopsis_thalianaAT1G64810.276.304361.3043prunus_aviumPav_sc0001342.1_g170.1.mk:mrna79.232563.6569
AT1G64810arabidopsis_thalianaAT1G64810.270.434855.8696phaseolus_vulgarisESW2441273.804158.5421
AT1G64810arabidopsis_thalianaAT1G64810.224.130418.913asparagus_officinalisONK6820258.421145.7895
AT1G64810arabidopsis_thalianaAT1G64810.223.260919.3478asparagus_officinalisONK6820186.290371.7742
AT1G64810arabidopsis_thalianaAT1G64810.270.652256.3043pisum_sativumPsat1g111840.1.cds61.436748.9603
AT1G64810arabidopsis_thalianaAT1G64810.265.434851.5217brachypodium_distachyonKQJ8459270.163255.2448
AT1G64810arabidopsis_thalianaAT1G64810.276.521762.8261quercus_subercds-POE45967.179.458265.237
AT1G64810arabidopsis_thalianaAT1G64810.268.91355.6522ananas_comosusAco017083.1.mrna171.882158.0499
AT1G64810arabidopsis_thalianaAT1G64810.289.782687.6087arabidopsis_lyratafgenesh2_kg.2__612__AT1G64810.194.942592.6437
AT1G64810arabidopsis_thalianaAT1G64810.276.304362.3913quercus_lobataQL05p066249:mrna79.232564.7856
AT1G64810arabidopsis_thalianaAT1G64810.270.869658.0435capsicum_annuumPHT9250473.258460
AT1G64810arabidopsis_thalianaAT1G64810.258.695749.5652lupinus_angustifoliusOIV9894982.568869.7248
AT1G64810arabidopsis_thalianaAT1G64810.287.391381.7391eutrema_salsugineumESQ3725492.626786.6359
AT1G64810arabidopsis_thalianaAT1G64810.289.782687.8261arabidopsis_hallerig26501.t194.942592.8736
AT1G64810arabidopsis_thalianaAT1G64810.259.565250.4348cajanus_cajanC.cajan_00894.t83.79270.948
AT1G64810arabidopsis_thalianaAT1G64810.271.521757.8261solanum_tuberosumPGSC0003DMT40005853875.114260.7306
AT1G64810arabidopsis_thalianaAT1G64810.265.217451.3043setaria_viridisTKW0655971.0955.9242
AT1G64810arabidopsis_thalianaAT1G64810.266.521750.4348oryza_nivaraONIVA04G24330.272.169854.717
AT1G64810arabidopsis_thalianaAT1G64810.267.826155.6522ipomoea_trilobaitb13g05390.t171.070658.3144
AT1G64810arabidopsis_thalianaAT1G64810.266.521750.2174oryza_glumipatulaOGLUM04G25180.272.169854.4811
AT1G64810arabidopsis_thalianaAT1G64810.266.521752.6087zea_maysZm00001eb070770_P00172.511857.346
AT1G64810arabidopsis_thalianaAT1G64810.267.173956.087sesamum_indicumSIN_1011701.t70.709459.0389
AT1G64810arabidopsis_thalianaAT1G64810.261.956548.2609lolium_perennecds.KYUSt_chr2.4766463.901349.7758
AT1G64810arabidopsis_thalianaAT1G64810.245.652228.913chara_brauniiGBG7695832.863820.8138
AT1G64810arabidopsis_thalianaAT1G64810.29.565224.13043ciona_savignyiENSCSAVP0000001440638.938116.8142
AT1G64810arabidopsis_thalianaAT1G64810.283.260977.6087brassica_junceacds.BjuA07g07390S88.863182.8306
AT1G64810arabidopsis_thalianaAT1G64810.265.869649.3478oryza_brachyanthaOB04G32160.171.462353.5377
AT1G64810arabidopsis_thalianaAT1G64810.271.521757.8261glycine_maxKRH3873873.437559.375
AT1G64810arabidopsis_thalianaAT1G64810.271.521758.2609glycine_maxKRH0924175.114261.1872
AT1G64810arabidopsis_thalianaAT1G64810.272.608758.6957corymbia_citriodoracds-KAF8030449.175.565661.086
AT1G64810arabidopsis_thalianaAT1G64810.26550.6522aegilops_tauschiiAET2Gv20927600.270.518954.9528
AT1G64810arabidopsis_thalianaAT1G64810.265.217451.087triticum_urartuTuG1812S0002262800.01.T0170.754755.4245
AT1G64810arabidopsis_thalianaAT1G64810.267.391351.087oryza_longistaminataKN539342.1_FGP00571.593554.2725
AT1G64810arabidopsis_thalianaAT1G64810.268.043556.3043fraxinus_excelsiorFRAEX38873_v2_000370380.1.cds74.880461.9617
AT1G64810arabidopsis_thalianaAT1G64810.267.173951.7391avena_sativa_sangAVESA.00010b.r2.2CG0318140.2.CDS58.082744.7368
AT1G64810arabidopsis_thalianaAT1G64810.266.521751.9565avena_sativa_sangAVESA.00010b.r2.2DG0364100.1.CDS52.487140.9949
AT1G64810arabidopsis_thalianaAT1G64810.266.304351.9565avena_sativa_sangAVESA.00010b.r2.2AG0239510.2.CDS71.93456.3679
AT1G64810arabidopsis_thalianaAT1G64810.268.695754.5652musa_acuminataMa02_p07440.168.695754.5652
AT1G64810arabidopsis_thalianaAT1G64810.266.304350.4348oryza_glaberrimaORGLA04G0223300.171.93454.717
AT1G64810arabidopsis_thalianaAT1G64810.265.434851.3043hordeum_vulgareHORVU.MOREX.r3.2HG0190570.170.990655.6604
AT1G64810arabidopsis_thalianaAT1G64810.266.304351.5217triticum_turgidumTRITD2Av1G246450.161.991948.1707
AT1G64810arabidopsis_thalianaAT1G64810.264.782651.087triticum_turgidumTRITD2Bv1G208090.270.28355.4245
AT1G64810arabidopsis_thalianaAT1G64810.264.782650.6522panicum_halliiPUZ4889870.783955.3444
AT1G64810arabidopsis_thalianaAT1G64810.266.521751.087echinochloa_crusgalliscaffold130.127.cds57.089643.8433
AT1G64810arabidopsis_thalianaAT1G64810.266.956550.8696echinochloa_crusgalliscaffold94.481.cds49.838237.8641
AT1G64810arabidopsis_thalianaAT1G64810.266.521750.4348echinochloa_crusgalliscaffold49.9.cds56.457642.8044
AT1G64810arabidopsis_thalianaAT1G64810.271.08757.8261actinidia_chinensisPSS1562473.318459.6413
AT1G64810arabidopsis_thalianaAT1G64810.274.347858.4783citrus_clementinaESR6321376.853960.4494
AT1G64810arabidopsis_thalianaAT1G64810.266.956550.6522oryza_indicaBGIOSGA017122-PA70.319653.1963
AT1G64810arabidopsis_thalianaAT1G64810.247.826135.2174selaginella_moellendorffiiEFJ2274257.591642.4084
AT1G64810arabidopsis_thalianaAT1G64810.247.826135.6522selaginella_moellendorffiiEFJ3318056.70142.268
AT1G64810arabidopsis_thalianaAT1G64810.266.739150.6522oryza_sativaOs04t0615500-0172.405754.9528
AT1G64810arabidopsis_thalianaAT1G64810.29.565224.56522homo_sapiensENSP0000041944938.938118.5841
AT1G64810arabidopsis_thalianaAT1G64810.264.782651.087triticum_aestivumTraesCS2B02G439500.170.28355.4245
AT1G64810arabidopsis_thalianaAT1G64810.265.217451.087triticum_aestivumTraesCS2A02G420600.168.493153.653
AT1G64810arabidopsis_thalianaAT1G64810.26550.6522triticum_aestivumTraesCS2D02G417300.170.518954.9528
AT1G64810arabidopsis_thalianaAT1G64810.266.521750.4348oryza_rufipogonORUFI04G26890.272.169854.717
AT1G64810arabidopsis_thalianaAT1G64810.265.869651.3043secale_cerealeSECCE2Rv1G0117860.171.462355.6604
AT1G64810arabidopsis_thalianaAT1G64810.27560gossypium_raimondiiKJB1304477.702762.1622
AT1G64810arabidopsis_thalianaAT1G64810.268.043556.087helianthus_annuusmRNA:HanXRQr2_Chr15g069248172.119859.447
AT1G64810arabidopsis_thalianaAT1G64810.265.869650.4348oryza_punctataOPUNC04G22770.171.462354.717
AT1G64810arabidopsis_thalianaAT1G64810.263.260950.4348eragrostis_tefEt_7B_054706.CDS71.323556.8627
AT1G64810arabidopsis_thalianaAT1G64810.264.130450.2174eragrostis_tefEt_7A_052069.CDS68.604753.7209
AT1G64810arabidopsis_thalianaAT1G64810.271.08756.087medicago_truncatulaAES7581672.505557.2062
AT1G64810arabidopsis_thalianaAT1G64810.266.304351.7391saccharum_spontaneumSspon.05G0002710-1A-mRNA-1:cds71.93456.1321
AT1G64810arabidopsis_thalianaAT1G64810.266.304351.7391saccharum_spontaneumSspon.05G0002710-2D-mRNA-1:cds71.93456.1321
AT1G64810arabidopsis_thalianaAT1G64810.265.869652.6087sorghum_bicolorKXG2710871.800957.346
AT1G64810arabidopsis_thalianaAT1G64810.265.217451.5217triticum_dicoccoidesTRIDC2BG064070.469.124454.6083
AT1G64810arabidopsis_thalianaAT1G64810.265.217451.087triticum_dicoccoidesTRIDC2AG060620.566.371751.9911
AT1G64810arabidopsis_thalianaAT1G64810.271.739157.1739coffea_canephoraCDO9869072.847758.0574
AT1G64810arabidopsis_thalianaAT1G64810.273.695758.4783manihot_esculentaOAY3833376.523760.7223
AT1G64810arabidopsis_thalianaAT1G64810.269.347857.1739kalanchoe_fedtschenkoiKaladp0073s0080.1.v1.172.83160.0457
AT1G64810arabidopsis_thalianaAT1G64810.268.478355trifolium_pratenseTp57577_TGAC_v2_mRNA598375.17960.3819
AT1G64810arabidopsis_thalianaAT1G64810.283.043577.3913brassica_rapa_ro18A07p012320.1_BraROA.188.631182.5986
AT1G64810arabidopsis_thalianaAT1G64810.272.826158.6957eucalyptus_grandisKCW7546775.963761.2245
AT1G64810arabidopsis_thalianaAT1G64810.231.304324.7826dioscorea_rotundataDRNTG_00086.3.cds178.260961.9565
AT1G64810arabidopsis_thalianaAT1G64810.223.478317.3913dioscorea_rotundataDRNTG_29261.164.670747.9042
AT1G64810arabidopsis_thalianaAT1G64810.276.304360.6522prunus_persicaONI1158079.232562.9797
AT1G64810arabidopsis_thalianaAT1G64810.266.521751.7391avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0002004.272.169856.1321
AT1G64810arabidopsis_thalianaAT1G64810.266.304351.9565avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0002080.271.93456.3679
AT1G64810arabidopsis_thalianaAT1G64810.267.173951.7391avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0002768.158.192144.8211
AT1G64810arabidopsis_thalianaAT1G64810.269.347853.913chenopodium_quinoaAUR62040270-RA:cds71.364755.481
AT1G64810arabidopsis_thalianaAT1G64810.269.347855.4348chenopodium_quinoaAUR62003975-RA:cds71.364757.047
AT1G64810arabidopsis_thalianaAT1G64810.263.260949.5652digitaria_exilisDexi7B01G0019510.1:cds71.149155.7457
AT1G64810arabidopsis_thalianaAT1G64810.263.043550.2174digitaria_exilisDexi7A01G0018730.1:cds71.428656.8966
AT1G64810arabidopsis_thalianaAT1G64810.266.304350.4348oryza_barthiiOBART04G25700.171.93454.717
AT1G64810arabidopsis_thalianaAT1G64810.284.782678.4783brassica_oleraceaBo7g038720.190.069383.3718
AT1G64810arabidopsis_thalianaAT1G64810.276.521760.4348prunus_dulcisVVA2727079.458262.754
AT1G64810arabidopsis_thalianaAT1G64810.274.347861.9565corylus_avellanaCav02g37740.t177.200964.3341
AT1G64810arabidopsis_thalianaAT1G64810.265.869650.4348leersia_perrieriLPERR04G20810.158.381544.7013
AT1G64810arabidopsis_thalianaAT1G64810.269.565257.8261olea_europaeaOE9A036991C171.748959.6413
AT1G64810arabidopsis_thalianaAT1G64810.271.739157.6087pistacia_veracds-EVM0002157.174.829960.0907
AT1G64810arabidopsis_thalianaAT1G64810.29.565224.34783drosophila_melanogasterFBpp00729084018.1818
AT1G64810arabidopsis_thalianaAT1G64810.281.304375.6522brassica_napusCDX7746890.338284.058
AT1G64810arabidopsis_thalianaAT1G64810.273.695760.2174corchorus_capsularisOMO7473330.790225.1589
AT1G64810arabidopsis_thalianaAT1G64810.267.826151.5217oryza_meridionalisOMERI04G20920.167.973951.634
AT1G64810arabidopsis_thalianaAT1G64810.223.043520.6522camelina_sativaCsa05g031720.182.170573.6434
AT1G64810arabidopsis_thalianaAT1G64810.288.260985camelina_sativaCsa16g012970.194.418690.9302
AT1G64810arabidopsis_thalianaAT1G64810.286.739184.1304camelina_sativaCsa05g031740.191.935589.1705
AT1G64810arabidopsis_thalianaAT1G64810.288.260984.3478camelina_sativaCsa07g012220.194.418690.2326
AT1G64810arabidopsis_thalianaAT1G64810.248.260935.2174malus_domestica_goldenmRNA:MD05G020960069.811350.9434
AT1G64810arabidopsis_thalianaAT1G64810.274.130459.3478malus_domestica_goldenmRNA:MD10G019430076.975261.6253
AT1G64810arabidopsis_thalianaAT1G64810.266.304353.2609daucus_carotaKZN1087149.674339.9023
AT1G64810arabidopsis_thalianaAT1G64810.272.826158.0435rosa_chinensisPRQ3006275.280960
AT1G64810arabidopsis_thalianaAT1G64810.273.91359.1304juglans_regiacds.Jr04_12170_p176.749461.3995
AT1G64810arabidopsis_thalianaAT1G64810.273.91359.1304juglans_regiacds.Jr04_12180_p176.062660.8501
AT1G64810arabidopsis_thalianaAT1G64810.265.869653.4783nymphaea_colorataNC11G0241370.1:cds7560.8911
AT1G64810arabidopsis_thalianaAT1G64810.268.91357.8261vigna_angularisKOM5465581.70168.5567
AT1G64810arabidopsis_thalianaAT1G64810.265.434851.5217setaria_italicaKQK9890671.32756.1611
AT1G64810arabidopsis_thalianaAT1G64810.273.91361.7391vitis_viniferaVitvi15g01403_P00176.576663.964
AT1G64810arabidopsis_thalianaAT1G64810.25040.8696cynara_cardunculusKVH9596872.32759.1195
AT1G64810arabidopsis_thalianaAT1G64810.261.08747.6087cynara_cardunculusKVH9597026.559520.6994
AT1G64810arabidopsis_thalianaAT1G64810.218.043512.6087cynara_cardunculusKVH9595443.455530.3665

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000373acts_upstream_of_or_within Group II intron splicing1IMPArabidopsis_thaliana(3702)Process
GO:0003723enables RNA binding1IDAArabidopsis_thaliana(3702)Function
GO:0008270enables zinc ion binding1IDAArabidopsis_thaliana(3702)Function
GO:0009507located_in chloroplast1IDAArabidopsis_thaliana(3702)Component
GO:0009658acts_upstream_of_or_within chloroplast organization1IMPArabidopsis_thaliana(3702)Process
GO:0010468acts_upstream_of_or_within regulation of gene expression1IMPArabidopsis_thaliana(3702)Process
GO:0015979acts_upstream_of_or_within photosynthesis1IMPArabidopsis_thaliana(3702)Process

Expression