Description

Ensembl ID AT1G53120 Gene ID 841746 Accession -
Symbol AT1G53120 Alias - Full Name RNA-binding S4 domain-containing protein
Status Confidence Length 2028 bases Strand Plus strand
Position 1 : 19792751 - 19794778 RNA binding domain YlmH_RBD , S4
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G53120 S4 PF01479 7.2e-08 1
AT1G53120 YlmH_RBD PF17774 1.9e-13 2
AT1G53120 YlmH_RBD PF17774 3.8e-13 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT1G53120-202 AT1G53120 1174 319aa AT1G53120

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G53120arabidopsis_thalianaAT3G15340.317.48737.97963arabidopsis_thalianaAT1G53120.132.187514.6875
AT1G53120arabidopsis_thalianaAT5G36780.117.18757.11806arabidopsis_thalianaAT1G53120.130.937512.8125
AT1G53120arabidopsis_thalianaAT1G20970.16.744872.56598arabidopsis_thalianaAT1G53120.128.7510.9375
AT1G53120arabidopsis_thalianaAT4G27500.116.50337.84314arabidopsis_thalianaAT1G53120.131.562515
AT1G53120arabidopsis_thalianaAT1G53110.120.27338.42825arabidopsis_thalianaAT1G53120.127.812511.5625
AT1G53120arabidopsis_thalianaAT5G36690.117.18757.11806arabidopsis_thalianaAT1G53120.130.937512.8125

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G53120arabidopsis_thalianaAT1G53120.142.187529.6875chondrus_crispusCDF3702549.450634.7985
AT1G53120arabidopsis_thalianaAT1G53120.156.87541.5625chlamydomonas_reinhardtiiPNW7495166.911848.8971
AT1G53120arabidopsis_thalianaAT1G53120.16546.25marchantia_polymorphaPTQ3843465.408846.5409
AT1G53120arabidopsis_thalianaAT1G53120.157.546.25papaver_somniferumRZC4653374.493959.919
AT1G53120arabidopsis_thalianaAT1G53120.179.687564.6875papaver_somniferumRZC6536179.439364.486
AT1G53120arabidopsis_thalianaAT1G53120.181.87569.0625cannabis_sativa_femalecds.evm.model.02.229881.366568.6335
AT1G53120arabidopsis_thalianaAT1G53120.178.437565ficus_caricaFCD_00012148-RA:cds57.568847.7064
AT1G53120arabidopsis_thalianaAT1G53120.184.687571.5625theobroma_cacaoEOY1302084.95371.7868
AT1G53120arabidopsis_thalianaAT1G53120.170.937556.25beta_vulgarisKMS9723073.701358.4416
AT1G53120arabidopsis_thalianaAT1G53120.160.937548.125beta_vulgarisKMT131557559.2308
AT1G53120arabidopsis_thalianaAT1G53120.181.87567.1875cucumis_meloMELO3C019408.2.182.131767.3981
AT1G53120arabidopsis_thalianaAT1G53120.182.187567.8125cucumis_sativusKGN5762682.445168.0251
AT1G53120arabidopsis_thalianaAT1G53120.182.187567.1875populus_trichocarpaPotri.011G119800.2.v4.181.67766.7702
AT1G53120arabidopsis_thalianaAT1G53120.18064.0625solanum_lycopersicumSolyc12g013870.2.173.352458.7393
AT1G53120arabidopsis_thalianaAT1G53120.179.687565lactuca_sativacds-PLY82011.181.210266.242
AT1G53120arabidopsis_thalianaAT1G53120.150.62533.75ostreococcus_lucimarinusABO9673953.465335.6436
AT1G53120arabidopsis_thalianaAT1G53120.172.558.4375eragrostis_curvulaTVU3512776.065661.3115
AT1G53120arabidopsis_thalianaAT1G53120.168.12557.8125citrullus_lanatusCla97C05G091640.192.372978.3898
AT1G53120arabidopsis_thalianaAT1G53120.18065.625vigna_radiataVradi0303s00020.179.25765.0155
AT1G53120arabidopsis_thalianaAT1G53120.171.2555.625amborella_trichopodaERN2048574.754158.3607
AT1G53120arabidopsis_thalianaAT1G53120.180.62565.625vigna_unguiculataVigun05g192700.1.v1.279.876265.0155
AT1G53120arabidopsis_thalianaAT1G53120.141.2532.1875vigna_unguiculataVigun05g192550.1.v1.279.518162.0482
AT1G53120arabidopsis_thalianaAT1G53120.179.687565.625prunus_aviumPav_sc0002828.1_g690.1.mk:mrna71.428658.8235
AT1G53120arabidopsis_thalianaAT1G53120.165.312553.75phaseolus_vulgarisESW2146188.185772.5738
AT1G53120arabidopsis_thalianaAT1G53120.178.7563.4375phaseolus_vulgarisESW3202478.018662.8483
AT1G53120arabidopsis_thalianaAT1G53120.17560.9375asparagus_officinalisONK7013880.267665.2174
AT1G53120arabidopsis_thalianaAT1G53120.179.687563.75pisum_sativumPsat5g243920.1.cds79.439363.5514
AT1G53120arabidopsis_thalianaAT1G53120.16552.1875brachypodium_distachyonPNT7284786.307169.2946
AT1G53120arabidopsis_thalianaAT1G53120.179.062562.8125quercus_subercds-POE88895.179.062562.8125
AT1G53120arabidopsis_thalianaAT1G53120.176.87562.8125ananas_comosusAco005610.1.mrna170.487157.5931
AT1G53120arabidopsis_thalianaAT1G53120.179.37563.4375quercus_lobataQL08p022081:mrna79.37563.4375
AT1G53120arabidopsis_thalianaAT1G53120.178.437564.375capsicum_annuumPHT7299979.430465.1899
AT1G53120arabidopsis_thalianaAT1G53120.175.937560lupinus_angustifoliusOIW1154287.410169.0648
AT1G53120arabidopsis_thalianaAT1G53120.19589.0625eutrema_salsugineumESQ301129589.0625
AT1G53120arabidopsis_thalianaAT1G53120.196.87593.75arabidopsis_hallerig15066.t196.87593.75
AT1G53120arabidopsis_thalianaAT1G53120.18064.0625cajanus_cajanC.cajan_13856.t79.25763.4675
AT1G53120arabidopsis_thalianaAT1G53120.179.687564.375solanum_tuberosumPGSC0003DMT40003960579.937364.5768
AT1G53120arabidopsis_thalianaAT1G53120.174.062560setaria_viridisTKW1674477.198762.5407
AT1G53120arabidopsis_thalianaAT1G53120.174.062561.25zea_maysZm00001eb153060_P00477.960564.4737
AT1G53120arabidopsis_thalianaAT1G53120.169.062554.375lolium_perennecds.KYUSt_chr3.3053375.426659.3857
AT1G53120arabidopsis_thalianaAT1G53120.189.062582.5arabis_alpinaKFK3574690.476283.8095
AT1G53120arabidopsis_thalianaAT1G53120.173.7559.6875oryza_brachyanthaOB01G39630.177.377162.623
AT1G53120arabidopsis_thalianaAT1G53120.181.562564.6875glycine_maxKRH2725280.555663.8889
AT1G53120arabidopsis_thalianaAT1G53120.173.437557.8125glycine_maxKRH2207577.049260.6557
AT1G53120arabidopsis_thalianaAT1G53120.142.812527.8125cyanidioschyzon_merolaeCMK194CT40.294126.1765
AT1G53120arabidopsis_thalianaAT1G53120.18065.3125corymbia_citriodoracds-KAF8024069.178.527664.1104
AT1G53120arabidopsis_thalianaAT1G53120.172.812559.0625aegilops_tauschiiAET3Gv20653300.1867.536254.7826
AT1G53120arabidopsis_thalianaAT1G53120.147.812538.4375oryza_longistaminataKN539095.1_FGP01085.474968.7151
AT1G53120arabidopsis_thalianaAT1G53120.17560.9375fraxinus_excelsiorFRAEX38873_v2_000098670.2.cds73.619659.816
AT1G53120arabidopsis_thalianaAT1G53120.173.12557.8125avena_sativa_sangAVESA.00010b.r2.3AG0448810.1.CDS68.221653.9359
AT1G53120arabidopsis_thalianaAT1G53120.172.812557.8125avena_sativa_sangAVESA.00010b.r2.3DG0549780.1.CDS66.95453.1609
AT1G53120arabidopsis_thalianaAT1G53120.169.687555.3125avena_sativa_sangAVESA.00010b.r2.3CG0502620.3.CDS62.994450
AT1G53120arabidopsis_thalianaAT1G53120.176.2563.125musa_acuminataMa04_p02620.177.460364.127
AT1G53120arabidopsis_thalianaAT1G53120.173.437558.4375oryza_glaberrimaORGLA01G0251500.177.049261.3115
AT1G53120arabidopsis_thalianaAT1G53120.173.12558.4375hordeum_vulgareHORVU.MOREX.r3.3HG0288580.276.721361.3115
AT1G53120arabidopsis_thalianaAT1G53120.173.12559.375triticum_turgidumTRITD3Av1G181760.177.483462.9139
AT1G53120arabidopsis_thalianaAT1G53120.172.812559.0625triticum_turgidumTRITD3Bv1G162910.376.393461.9672
AT1G53120arabidopsis_thalianaAT1G53120.173.7558.75panicum_halliiPUZ5481277.377161.6393
AT1G53120arabidopsis_thalianaAT1G53120.170.312556.25echinochloa_crusgalliscaffold171.129.cds71.428657.1429
AT1G53120arabidopsis_thalianaAT1G53120.171.562556.25echinochloa_crusgalliscaffold15.630.cds71.11855.9006
AT1G53120arabidopsis_thalianaAT1G53120.174.687559.6875echinochloa_crusgalliscaffold89.102.cds77.346361.8123
AT1G53120arabidopsis_thalianaAT1G53120.159.687553.75actinidia_chinensisPSR9569190.521381.5166
AT1G53120arabidopsis_thalianaAT1G53120.182.812568.125citrus_clementinaESR6507182.298167.7019
AT1G53120arabidopsis_thalianaAT1G53120.173.7558.75oryza_indicaBGIOSGA004452-PA77.377161.6393
AT1G53120arabidopsis_thalianaAT1G53120.155.62540.625selaginella_moellendorffiiEFJ3783972.653153.0612
AT1G53120arabidopsis_thalianaAT1G53120.156.2541.25selaginella_moellendorffiiEFJ3201273.469453.8776
AT1G53120arabidopsis_thalianaAT1G53120.173.7558.75oryza_sativaOs01t0747700-0177.377161.6393
AT1G53120arabidopsis_thalianaAT1G53120.173.12559.375triticum_aestivumTraesCS3A02G273700.177.483462.9139
AT1G53120arabidopsis_thalianaAT1G53120.172.812559.0625triticum_aestivumTraesCS3D02G273000.176.393461.9672
AT1G53120arabidopsis_thalianaAT1G53120.172.558.75triticum_aestivumTraesCS3B02G307400.176.065661.6393
AT1G53120arabidopsis_thalianaAT1G53120.147.538.75oryza_rufipogonORUFI01G33860.285.875770.0565
AT1G53120arabidopsis_thalianaAT1G53120.173.12559.0625secale_cerealeSECCE3Rv1G0187320.176.721361.9672
AT1G53120arabidopsis_thalianaAT1G53120.129.37523.4375gossypium_raimondiiKJB8198791.262172.8155
AT1G53120arabidopsis_thalianaAT1G53120.179.062566.5625helianthus_annuusmRNA:HanXRQr2_Chr03g011562180.317567.619
AT1G53120arabidopsis_thalianaAT1G53120.169.687554.375eragrostis_tefEt_3B_029355.CDS70.793655.2381
AT1G53120arabidopsis_thalianaAT1G53120.170.62557.1875eragrostis_tefEt_3A_024964.CDS75.333361
AT1G53120arabidopsis_thalianaAT1G53120.179.37563.125medicago_truncatulaAES6701278.153862.1538
AT1G53120arabidopsis_thalianaAT1G53120.17560.625saccharum_spontaneumSspon.03G0006550-1A-mRNA-1:cds78.947463.8158
AT1G53120arabidopsis_thalianaAT1G53120.17560.625saccharum_spontaneumSspon.03G0006550-2B-mRNA-1:cds78.947463.8158
AT1G53120arabidopsis_thalianaAT1G53120.174.687560.3125sorghum_bicolorEES0147178.618463.4868
AT1G53120arabidopsis_thalianaAT1G53120.172.558.75triticum_dicoccoidesTRIDC3BG045830.671.384657.8462
AT1G53120arabidopsis_thalianaAT1G53120.172.812559.0625triticum_dicoccoidesTRIDC3AG040670.177.152362.5828
AT1G53120arabidopsis_thalianaAT1G53120.184.37567.8125manihot_esculentaOAY5488181.818265.7576
AT1G53120arabidopsis_thalianaAT1G53120.18066.25kalanchoe_fedtschenkoiKaladp0008s0872.1.v1.178.287564.8318
AT1G53120arabidopsis_thalianaAT1G53120.178.437562.5trifolium_pratenseTp57577_TGAC_v2_mRNA4034380.448764.1026
AT1G53120arabidopsis_thalianaAT1G53120.178.7565.625eucalyptus_grandisKCW6736377.300664.4172
AT1G53120arabidopsis_thalianaAT1G53120.17560.625dioscorea_rotundataDRNTG_25062.170.175456.7251
AT1G53120arabidopsis_thalianaAT1G53120.178.7564.6875prunus_persicaONI1272271.794958.9744
AT1G53120arabidopsis_thalianaAT1G53120.173.12557.8125avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0002163.271.341556.4024
AT1G53120arabidopsis_thalianaAT1G53120.172.812557.8125avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0001712.171.036656.4024
AT1G53120arabidopsis_thalianaAT1G53120.172.558.4375chenopodium_quinoaAUR62019433-RA:cds77.076462.1262
AT1G53120arabidopsis_thalianaAT1G53120.173.12559.6875chenopodium_quinoaAUR62039201-RA:cds71.559658.4098
AT1G53120arabidopsis_thalianaAT1G53120.170.312554.375digitaria_exilisDexi5A01G0026840.1:cds73.051956.4935
AT1G53120arabidopsis_thalianaAT1G53120.168.437554.375digitaria_exilisDexi5B01G0027070.1:cds75.257759.7938
AT1G53120arabidopsis_thalianaAT1G53120.155.937544.6875oryza_barthiiOBART01G30710.173.061258.3673
AT1G53120arabidopsis_thalianaAT1G53120.191.87585.3125brassica_oleraceaBo6g029270.192.16385.5799
AT1G53120arabidopsis_thalianaAT1G53120.178.7565prunus_dulcisVVA1672171.794959.2593
AT1G53120arabidopsis_thalianaAT1G53120.179.062562.8125corylus_avellanaCav03g23710.t180.573264.0127
AT1G53120arabidopsis_thalianaAT1G53120.174.687560.3125olea_europaeaOE9A010190C164.945752.4457
AT1G53120arabidopsis_thalianaAT1G53120.181.87567.5pistacia_veracds-EVM0006215.181.366567.0807
AT1G53120arabidopsis_thalianaAT1G53120.181.87567.5pistacia_veracds-EVM0006484.181.366567.0807
AT1G53120arabidopsis_thalianaAT1G53120.191.87585brassica_napusCDY5051392.16385.2665
AT1G53120arabidopsis_thalianaAT1G53120.191.87585.3125brassica_napusCDY2587892.452885.8491
AT1G53120arabidopsis_thalianaAT1G53120.184.062570corchorus_capsularisOMO5561984.062570
AT1G53120arabidopsis_thalianaAT1G53120.196.562592.8125camelina_sativaCsa17g093370.196.562592.8125
AT1G53120arabidopsis_thalianaAT1G53120.196.562593.125camelina_sativaCsa14g063470.153.092851.2027
AT1G53120arabidopsis_thalianaAT1G53120.156.562553.75camelina_sativaCsa03g060250.193.29988.6598
AT1G53120arabidopsis_thalianaAT1G53120.194.687590.3125camelina_sativaCsa03g060260.151.883649.4863
AT1G53120arabidopsis_thalianaAT1G53120.182.187567.1875malus_domestica_goldenmRNA:MD11G020310081.67766.7702
AT1G53120arabidopsis_thalianaAT1G53120.178.437564.0625daucus_carotaKZM9631880.191765.4952
AT1G53120arabidopsis_thalianaAT1G53120.181.87566.5625rosa_chinensisPRQ3123981.366566.1491
AT1G53120arabidopsis_thalianaAT1G53120.171.2558.75juglans_regiacds.Jr02_21920_p178.620764.8276
AT1G53120arabidopsis_thalianaAT1G53120.177.812564.0625juglans_regiacds.Jr02_21910_p180.064365.9164
AT1G53120arabidopsis_thalianaAT1G53120.178.12564.375juglans_regiacds.Jr02_21890_p179.872265.8147
AT1G53120arabidopsis_thalianaAT1G53120.172.812560juglans_regiacds.Jr02_21900_p178.98365.0847
AT1G53120arabidopsis_thalianaAT1G53120.173.12556.25nymphaea_colorataNC9G0111710.1:cds73.12556.25
AT1G53120arabidopsis_thalianaAT1G53120.176.562562.5vigna_angularisKOM4359186.879470.922
AT1G53120arabidopsis_thalianaAT1G53120.171.87558.4375setaria_italicaKQL0696376.666762.3333
AT1G53120arabidopsis_thalianaAT1G53120.169.687548.125physcomitrium_patensPp3c20_21790V3.264.450944.5087
AT1G53120arabidopsis_thalianaAT1G53120.181.562568.75vitis_viniferaVitvi19g00217_P00180.555667.9012

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0008150involved_in biological_process1NDArabidopsis_thaliana(3702)Process
GO:0009507located_in chloroplast2HDA,ISMArabidopsis_thaliana(3702)Component
GO:0009579located_in thylakoid1IEAArabidopsis_thaliana(3702)Component

Expression