Description

Ensembl ID AT1G49250 Gene ID 841349 Accession -
Symbol AT1G49250 Alias - Full Name ATP-dependent DNA ligase
Status Confidence Length 3793 bases Strand Plus strand
Position 1 : 18220533 - 18224325 RNA binding domain RNA_ligase
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G49250 RNA_ligase PF09414 2.6e-07 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT1G49250-201 AT1G49250 2043 657aa AT1G49250

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G49250arabidopsis_thalianaAT5G57160.121.32911.2387arabidopsis_thalianaAT1G49250.139.573820.8524
AT1G49250arabidopsis_thalianaAT1G66730.126.790817.6218arabidopsis_thalianaAT1G49250.156.925437.4429
AT1G49250arabidopsis_thalianaAT1G08130.172.658264.0506arabidopsis_thalianaAT1G49250.187.366877.0167

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G49250arabidopsis_thalianaAT1G49250.161.643842.9224chondrus_crispusCDF3901748.972234.0992
AT1G49250arabidopsis_thalianaAT1G49250.164.535847.032chlamydomonas_reinhardtiiPNW8063743.576631.7575
AT1G49250arabidopsis_thalianaAT1G49250.171.232954.0335marchantia_polymorphaPTQ4173566.101750.1412
AT1G49250arabidopsis_thalianaAT1G49250.173.972658.5997papaver_somniferumRZC7054863.529450.3268
AT1G49250arabidopsis_thalianaAT1G49250.140.943732.1157papaver_somniferumRZC5145673.497357.6503
AT1G49250arabidopsis_thalianaAT1G49250.160.730647.1842papaver_somniferumRZC5153270.619554.8673
AT1G49250arabidopsis_thalianaAT1G49250.157.990945.0533papaver_somniferumRZC5005664.033649.7479
AT1G49250arabidopsis_thalianaAT1G49250.174.581459.2085papaver_somniferumRZC7704163.553850.454
AT1G49250arabidopsis_thalianaAT1G49250.138.20429.8326papaver_somniferumRZC5011869.529154.2936
AT1G49250arabidopsis_thalianaAT1G49250.180.669765.1446cannabis_sativa_femalecds.evm.model.06.109466.666753.8365
AT1G49250arabidopsis_thalianaAT1G49250.180.060964.688ficus_caricaFCD_00001184-RA:cds66.414153.6616
AT1G49250arabidopsis_thalianaAT1G49250.181.278566.9711theobroma_cacaoEOY3449566.7555
AT1G49250arabidopsis_thalianaAT1G49250.165.601245.0533beta_vulgarisKMT0377861.048241.9263
AT1G49250arabidopsis_thalianaAT1G49250.180.213166.6667cucumis_meloMELO3C026949.2.162.07351.5901
AT1G49250arabidopsis_thalianaAT1G49250.180.517566.3623cucumis_sativusKGN4687666.042454.432
AT1G49250arabidopsis_thalianaAT1G49250.181.126364.688populus_trichocarpaPotri.009G005900.2.v4.166.62553.125
AT1G49250arabidopsis_thalianaAT1G49250.178.386661.796solanum_lycopersicumSolyc11g066370.2.164.214550.6234
AT1G49250arabidopsis_thalianaAT1G49250.157.077640.1826caenorhabditis_elegansC29A12.3a.148.512334.1527
AT1G49250arabidopsis_thalianaAT1G49250.161.79649.3151lactuca_sativacds-PLY70545.181.264.8
AT1G49250arabidopsis_thalianaAT1G49250.163.013748.0974ostreococcus_lucimarinusABO9820062.349447.5904
AT1G49250arabidopsis_thalianaAT1G49250.177.473460.5784eragrostis_curvulaTVU3025155.628443.4973
AT1G49250arabidopsis_thalianaAT1G49250.177.473460.5784eragrostis_curvulaTVU3027055.628443.4973
AT1G49250arabidopsis_thalianaAT1G49250.180.517566.5145citrullus_lanatusCla97C02G047630.165.79654.3532
AT1G49250arabidopsis_thalianaAT1G49250.173.211657.9909vigna_radiataVradi02g06280.158.444746.294
AT1G49250arabidopsis_thalianaAT1G49250.114.916311.8721amborella_trichopodaERN1982675.96960.4651
AT1G49250arabidopsis_thalianaAT1G49250.174.885858.5997amborella_trichopodaERN0050170.689755.3161
AT1G49250arabidopsis_thalianaAT1G49250.177.625661.796vigna_unguiculataVigun11g135300.1.v1.264.475351.3274
AT1G49250arabidopsis_thalianaAT1G49250.180.821964.5358prunus_aviumPav_sc0000467.1_g1060.1.mk:mrna65.799352.5403
AT1G49250arabidopsis_thalianaAT1G49250.137.290728.1583phaseolus_vulgarisESW2086554.932741.4798
AT1G49250arabidopsis_thalianaAT1G49250.117.503813.242phaseolus_vulgarisESW2086482.142962.1429
AT1G49250arabidopsis_thalianaAT1G49250.178.082261.6438phaseolus_vulgarisESW0432663.490150.1238
AT1G49250arabidopsis_thalianaAT1G49250.161.643849.0107asparagus_officinalisONK7274265.217451.8519
AT1G49250arabidopsis_thalianaAT1G49250.130.441424.2009pisum_sativumPsat1g136680.1.cds71.428656.7857
AT1G49250arabidopsis_thalianaAT1G49250.178.995463.0137pisum_sativumPsat7g191720.1.cds65.696252.4051
AT1G49250arabidopsis_thalianaAT1G49250.177.321260.5784brachypodium_distachyonPNT6761455.337743.3551
AT1G49250arabidopsis_thalianaAT1G49250.118.721514.003quercus_subercds-POF07374.158.293843.6019
AT1G49250arabidopsis_thalianaAT1G49250.176.560161.6438ananas_comosusAco007673.1.mrna163.670951.2658
AT1G49250arabidopsis_thalianaAT1G49250.181.126376.7123arabidopsis_lyratafgenesh1_pg.C_scaffold_100361385.2880.64
AT1G49250arabidopsis_thalianaAT1G49250.181.58365.9056quercus_lobataQL01p015243:mrna71.849958.0429
AT1G49250arabidopsis_thalianaAT1G49250.178.082261.3394capsicum_annuumPHT6921859.720646.915
AT1G49250arabidopsis_thalianaAT1G49250.176.255760.5784lupinus_angustifoliusOIW0582969.486855.2011
AT1G49250arabidopsis_thalianaAT1G49250.175.799160.5784lupinus_angustifoliusOIV9930870.33956.2147
AT1G49250arabidopsis_thalianaAT1G49250.175.951364.5358eutrema_salsugineumESQ4717868.076457.8445
AT1G49250arabidopsis_thalianaAT1G49250.158.447549.6195eutrema_salsugineumESQ4717180.842168.6316
AT1G49250arabidopsis_thalianaAT1G49250.187.823483.8661arabidopsis_hallerig31443.t186.636682.7327
AT1G49250arabidopsis_thalianaAT1G49250.178.082261.796cajanus_cajanC.cajan_21590.t66.796952.8646
AT1G49250arabidopsis_thalianaAT1G49250.135.007627.0928cajanus_cajanC.cajan_38534.t75.163458.1699
AT1G49250arabidopsis_thalianaAT1G49250.178.234461.4916setaria_viridisTKV9320356.670344.5424
AT1G49250arabidopsis_thalianaAT1G49250.175.190358.5997oryza_nivaraONIVA10G15330.254.166742.2149
AT1G49250arabidopsis_thalianaAT1G49250.178.995462.2527ipomoea_trilobaitb04g30760.t165.946651.9695
AT1G49250arabidopsis_thalianaAT1G49250.176.864559.8174oryza_glumipatulaOGLUM10G13870.162.345748.5185
AT1G49250arabidopsis_thalianaAT1G49250.114.30759.89346zea_maysZm00001eb171350_P00139.495827.3109
AT1G49250arabidopsis_thalianaAT1G49250.177.625660.5784zea_maysZm00001eb045200_P00156.105643.7844
AT1G49250arabidopsis_thalianaAT1G49250.179.908763.4703sesamum_indicumSIN_1024085.t66.287952.6515
AT1G49250arabidopsis_thalianaAT1G49250.172.450556.1644lolium_perennecds.KYUSt_chr1.1848452.830240.9545
AT1G49250arabidopsis_thalianaAT1G49250.170.928553.7291chara_brauniiGBG8737538.10328.8635
AT1G49250arabidopsis_thalianaAT1G49250.111.872110.1979arabis_alpinaKFK2856285.714373.6264
AT1G49250arabidopsis_thalianaAT1G49250.161.491650.9893arabis_alpinaKFK2968879.371365.8153
AT1G49250arabidopsis_thalianaAT1G49250.164.68849.7717arabis_alpinaKFK4066665.789550.6192
AT1G49250arabidopsis_thalianaAT1G49250.163.926945.6621ciona_savignyiENSCSAVP0000000353850.059635.7569
AT1G49250arabidopsis_thalianaAT1G49250.174.885859.3607oryza_brachyanthaOB10G21140.175.692360
AT1G49250arabidopsis_thalianaAT1G49250.179.452163.3181glycine_maxKRH2510367.26853.6082
AT1G49250arabidopsis_thalianaAT1G49250.157.686545.9665glycine_maxKRH3056862.956850.1661
AT1G49250arabidopsis_thalianaAT1G49250.163.926941.7047cyanidioschyzon_merolaeCMK235CT40.85626.6537
AT1G49250arabidopsis_thalianaAT1G49250.132.267926.1796corymbia_citriodoracds-KAF8009577.183.794567.9842
AT1G49250arabidopsis_thalianaAT1G49250.158.447547.1842corymbia_citriodoracds-KAF8009553.160.472448.8189
AT1G49250arabidopsis_thalianaAT1G49250.174.124857.9909aegilops_tauschiiAET1Gv20452600.2455.848643.6927
AT1G49250arabidopsis_thalianaAT1G49250.178.082261.3394triticum_urartuTuG1812G0100001934.01.T0163.411649.8146
AT1G49250arabidopsis_thalianaAT1G49250.176.103559.3607oryza_longistaminataKN542004.1_FGP00164.267350.1285
AT1G49250arabidopsis_thalianaAT1G49250.112.937610.8067fraxinus_excelsiorFRAEX38873_v2_000039890.1.cds80.188766.9811
AT1G49250arabidopsis_thalianaAT1G49250.169.406453.7291avena_sativa_sangAVESA.00010b.r2.1AG0064300.1.CDS55.339842.8398
AT1G49250arabidopsis_thalianaAT1G49250.152.20739.5738avena_sativa_sangAVESA.00010b.r2.1DG0182920.1.CDS49.854737.7907
AT1G49250arabidopsis_thalianaAT1G49250.177.473460.1218avena_sativa_sangAVESA.00010b.r2.1CG0092800.1.CDS57.449244.5824
AT1G49250arabidopsis_thalianaAT1G49250.176.407960.274musa_acuminataMa04_p22700.166.933352.8
AT1G49250arabidopsis_thalianaAT1G49250.177.9361.1872hordeum_vulgareHORVU.MOREX.r3.1HG0046710.158.24845.7338
AT1G49250arabidopsis_thalianaAT1G49250.168.797653.7291triticum_turgidumTRITD1Av1G110770.360.834547.5101
AT1G49250arabidopsis_thalianaAT1G49250.172.146156.621triticum_turgidumTRITD1Bv1G107980.462.041948.6911
AT1G49250arabidopsis_thalianaAT1G49250.177.777861.1872panicum_halliiPUZ3851256.153844.1758
AT1G49250arabidopsis_thalianaAT1G49250.177.777861.035echinochloa_crusgalliscaffold27.708.cds56.401844.2605
AT1G49250arabidopsis_thalianaAT1G49250.177.16960.8828echinochloa_crusgalliscaffold165.21.cds62.6749.4438
AT1G49250arabidopsis_thalianaAT1G49250.177.473460.8828echinochloa_crusgalliscaffold112.193.cds55.995644.0044
AT1G49250arabidopsis_thalianaAT1G49250.180.213163.4703actinidia_chinensisPSR8655365.384651.737
AT1G49250arabidopsis_thalianaAT1G49250.182.800666.3623citrus_clementinaESR3769772.148557.8249
AT1G49250arabidopsis_thalianaAT1G49250.142.009132.7245citrus_clementinaESR6139462.443448.6425
AT1G49250arabidopsis_thalianaAT1G49250.173.211657.6865oryza_indicaBGIOSGA031653-PA76.714560.4466
AT1G49250arabidopsis_thalianaAT1G49250.169.710854.7945selaginella_moellendorffiiEFJ1478871.786856.4263
AT1G49250arabidopsis_thalianaAT1G49250.169.558654.7945selaginella_moellendorffiiEFJ2653271.630156.4263
AT1G49250arabidopsis_thalianaAT1G49250.165.753450.8371oryza_sativaOs10t0489200-0152.173940.3382
AT1G49250arabidopsis_thalianaAT1G49250.164.992445.0533homo_sapiensENSP0000026327446.463532.2089
AT1G49250arabidopsis_thalianaAT1G49250.178.082261.4916triticum_aestivumTraesCS1B02G184700.164.772751.0101
AT1G49250arabidopsis_thalianaAT1G49250.178.082261.3394triticum_aestivumTraesCS1D02G172600.157.446845.1288
AT1G49250arabidopsis_thalianaAT1G49250.177.9361.3394triticum_aestivumTraesCS1A02G172100.157.334845.1288
AT1G49250arabidopsis_thalianaAT1G49250.175.190358.5997oryza_rufipogonORUFI10G14840.254.166742.2149
AT1G49250arabidopsis_thalianaAT1G49250.178.082261.3394secale_cerealeSECCE1Rv1G0026670.158.494945.9521
AT1G49250arabidopsis_thalianaAT1G49250.181.58367.1233gossypium_raimondiiKJB2038866.666754.8507
AT1G49250arabidopsis_thalianaAT1G49250.178.082261.6438helianthus_annuusmRNA:HanXRQr2_Chr11g050967164.936751.2658
AT1G49250arabidopsis_thalianaAT1G49250.177.777860.1218helianthus_annuusmRNA:HanXRQr2_Chr01g003041164.276749.6855
AT1G49250arabidopsis_thalianaAT1G49250.177.016760.1218oryza_punctataOPUNC10G12470.162.009848.4069
AT1G49250arabidopsis_thalianaAT1G49250.172.754958.1431eragrostis_tefEt_1B_010753.CDS57.245545.7485
AT1G49250arabidopsis_thalianaAT1G49250.171.385156.4688eragrostis_tefEt_1A_008819.CDS53.90842.6437
AT1G49250arabidopsis_thalianaAT1G49250.177.9363.3181medicago_truncatulaKEH2995565.894553.5393
AT1G49250arabidopsis_thalianaAT1G49250.175.342560.4262medicago_truncatulaAES8853467.530754.161
AT1G49250arabidopsis_thalianaAT1G49250.171.537354.9467medicago_truncatulaKEH1978465.918750.6311
AT1G49250arabidopsis_thalianaAT1G49250.149.010737.7473saccharum_spontaneumSspon.01G0019980-2B-mRNA-1:cds49.085437.8049
AT1G49250arabidopsis_thalianaAT1G49250.178.234460.7306saccharum_spontaneumSspon.01G0020010-2B-mRNA-1:cds64.735550.2519
AT1G49250arabidopsis_thalianaAT1G49250.177.777860.7306saccharum_spontaneumSspon.01G0019980-1A-mRNA-1:cds54.074142.2222
AT1G49250arabidopsis_thalianaAT1G49250.178.082260.8828sorghum_bicolorKXG3828055.10242.9646
AT1G49250arabidopsis_thalianaAT1G49250.174.27758.2953triticum_dicoccoidesTRIDC1BG030750.155.899243.8717
AT1G49250arabidopsis_thalianaAT1G49250.174.124858.1431triticum_dicoccoidesTRIDC1AG026200.555.784643.7572
AT1G49250arabidopsis_thalianaAT1G49250.179.299963.4703coffea_canephoraCDP0703473.380358.7324
AT1G49250arabidopsis_thalianaAT1G49250.111.71998.6758coffea_canephoraCDP0780642.541431.4917
AT1G49250arabidopsis_thalianaAT1G49250.135.31228.0061coffea_canephoraCDP1461984.05866.6667
AT1G49250arabidopsis_thalianaAT1G49250.180.517565.6012manihot_esculentaOAY3809265.79653.607
AT1G49250arabidopsis_thalianaAT1G49250.153.729142.1613kalanchoe_fedtschenkoiKaladp0008s0456.1.v1.159.427646.633
AT1G49250arabidopsis_thalianaAT1G49250.136.529728.9193kalanchoe_fedtschenkoiKaladp0008s0459.1.v1.179.470262.9139
AT1G49250arabidopsis_thalianaAT1G49250.134.246625.8752kalanchoe_fedtschenkoiKaladp0622s0007.1.v1.155.693142.0792
AT1G49250arabidopsis_thalianaAT1G49250.172.450554.7945kalanchoe_fedtschenkoiKaladp0008s0458.1.v1.162.385347.1822
AT1G49250arabidopsis_thalianaAT1G49250.161.79646.4231kalanchoe_fedtschenkoiKaladp0008s0446.1.v1.158.585944.0115
AT1G49250arabidopsis_thalianaAT1G49250.177.321263.6225trifolium_pratenseTp57577_TGAC_v2_mRNA3802667.914455.8824
AT1G49250arabidopsis_thalianaAT1G49250.121.613417.656trifolium_pratenseTp57577_TGAC_v2_mRNA332584.523869.0476
AT1G49250arabidopsis_thalianaAT1G49250.144.901137.1385trifolium_pratenseTp57577_TGAC_v2_mRNA3800380.381566.485
AT1G49250arabidopsis_thalianaAT1G49250.161.03546.4231trifolium_pratenseTp57577_TGAC_v2_mRNA845376.67358.3174
AT1G49250arabidopsis_thalianaAT1G49250.180.060964.9924eucalyptus_grandisKCW5070370.22757.0093
AT1G49250arabidopsis_thalianaAT1G49250.175.038159.6651dioscorea_rotundataDRNTG_10103.165.211651.8519
AT1G49250arabidopsis_thalianaAT1G49250.180.821964.0791prunus_persicaONI0092967.300453.3587
AT1G49250arabidopsis_thalianaAT1G49250.177.321260.274avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000574.256.633244.1472
AT1G49250arabidopsis_thalianaAT1G49250.177.321260.4262avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000601.154.273542.4145
AT1G49250arabidopsis_thalianaAT1G49250.177.473460.1218avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0001197.156.305343.6947
AT1G49250arabidopsis_thalianaAT1G49250.178.69162.1005chenopodium_quinoaAUR62029176-RA:cds70.919155.9671
AT1G49250arabidopsis_thalianaAT1G49250.172.907256.621digitaria_exilisDexi9A01G0019850.1:cds54.61842.4173
AT1G49250arabidopsis_thalianaAT1G49250.168.036552.968digitaria_exilisDexi9B01G0019710.1:cds53.087941.3302
AT1G49250arabidopsis_thalianaAT1G49250.177.16959.9696oryza_barthiiOBART10G14020.164.258649.9366
AT1G49250arabidopsis_thalianaAT1G49250.180.365363.7747prunus_dulcisVVA3425966.835453.038
AT1G49250arabidopsis_thalianaAT1G49250.159.512940.3349galdieria_sulphurariaEME3028052.766535.7625
AT1G49250arabidopsis_thalianaAT1G49250.131.202424.3531corylus_avellanaCav10g08150.t181.027763.2411
AT1G49250arabidopsis_thalianaAT1G49250.173.363856.9254leersia_perrieriLPERR10G10480.152.96741.0989
AT1G49250arabidopsis_thalianaAT1G49250.178.538861.9482nicotiana_attenuataOIT2549866.580652.5161
AT1G49250arabidopsis_thalianaAT1G49250.178.995463.7747olea_europaeaOE9A051562C459.314347.8857
AT1G49250arabidopsis_thalianaAT1G49250.178.538863.7747olea_europaeaOE9A117723C261.355549.8216
AT1G49250arabidopsis_thalianaAT1G49250.161.03541.0959saccharomyces_cerevisiaeYDL164C53.112635.7616
AT1G49250arabidopsis_thalianaAT1G49250.183.561665.2968pistacia_veracds-EVM0018951.168.453953.4913
AT1G49250arabidopsis_thalianaAT1G49250.164.079145.0533drosophila_melanogasterFBpp007204156.358839.6252
AT1G49250arabidopsis_thalianaAT1G49250.140.182628.0061corchorus_capsularisOMP1173460.689742.2989
AT1G49250arabidopsis_thalianaAT1G49250.176.864559.8174oryza_meridionalisOMERI10G10750.156.741644.1573
AT1G49250arabidopsis_thalianaAT1G49250.174.27759.3607malus_domestica_goldenmRNA:MD03G010550082.993266.3265
AT1G49250arabidopsis_thalianaAT1G49250.154.642342.9224malus_domestica_goldenmRNA:MD11G011680082.718964.977
AT1G49250arabidopsis_thalianaAT1G49250.177.321261.9482daucus_carotaKZM9552667.914454.4118
AT1G49250arabidopsis_thalianaAT1G49250.179.756564.0791rosa_chinensisPRQ3337965.829152.8894
AT1G49250arabidopsis_thalianaAT1G49250.176.712361.3394juglans_regiacds.Jr14_14990_p167.65154.094
AT1G49250arabidopsis_thalianaAT1G49250.181.278565.1446juglans_regiacds.Jr14_14980_p168.112254.5918
AT1G49250arabidopsis_thalianaAT1G49250.175.190359.3607nymphaea_colorataNC12G0188280.1:cds64.659751.0471
AT1G49250arabidopsis_thalianaAT1G49250.178.386662.2527vigna_angularisKOM5064069.313655.0471
AT1G49250arabidopsis_thalianaAT1G49250.177.625661.035setaria_italicaKQK8859366.147952.0104
AT1G49250arabidopsis_thalianaAT1G49250.172.754955.2511physcomitrium_patensPp3c13_20200V3.161.597946.7784
AT1G49250arabidopsis_thalianaAT1G49250.172.754955.2511physcomitrium_patensPp3c13_20209V3.461.597946.7784
AT1G49250arabidopsis_thalianaAT1G49250.178.995463.0137vitis_viniferaVitvi06g01341_P00166.368352.9412
AT1G49250arabidopsis_thalianaAT1G49250.171.841756.7732cynara_cardunculusKVI0018267.52553.3619

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003677enables DNA binding1IEAArabidopsis_thaliana(3702)Function
GO:0003910enables DNA ligase (ATP) activity1IEAArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0071897involved_in DNA biosynthetic process1IEAArabidopsis_thaliana(3702)Process

Expression