Description

Ensembl ID AT1G31360 Gene ID 840026 Accession -
Symbol RECQL2 Alias - Full Name RECQ helicase L2
Status Confidence Length 5277 bases Strand Plus strand
Position 1 : 11232318 - 11237594 RNA binding domain ResIII , DEAD , HRDC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G31360 DEAD PF00270 1.5e-20 1
AT1G31360 DEAD PF00270 1.5e-20 2
AT1G31360 DEAD PF00270 1.6e-20 3
AT1G31360 DEAD PF00270 1.8e-20 4
AT1G31360 DEAD PF00270 2.2e-20 5
AT1G31360 DEAD PF00270 2.8e-20 6
AT1G31360 DEAD PF00270 3.4e-20 7
AT1G31360 DEAD PF00270 4.3e-10 8
AT1G31360 ResIII PF04851 2.8e-05 9
AT1G31360 ResIII PF04851 3.1e-05 10
AT1G31360 ResIII PF04851 3.1e-05 11
AT1G31360 ResIII PF04851 3.1e-05 12
AT1G31360 ResIII PF04851 3.2e-05 13
AT1G31360 ResIII PF04851 3.2e-05 14
AT1G31360 ResIII PF04851 3.4e-05 15
AT1G31360 HRDC PF00570 8.1e-09 16
AT1G31360 HRDC PF00570 1e-08 17
AT1G31360 HRDC PF00570 1.1e-08 18

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RECQL2-207 AT1G31360 2482 643aa AT1G31360

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G31360arabidopsis_thalianaAT1G10930.132.744121.4646arabidopsis_thalianaAT1G31360.352.638734.5061
AT1G31360arabidopsis_thalianaAT5G27680.234.615421.2121arabidopsis_thalianaAT1G31360.340.189424.6279
AT1G31360arabidopsis_thalianaAT3G05740.143.894429.868arabidopsis_thalianaAT1G31360.335.994624.4926
AT1G31360arabidopsis_thalianaAT4G35740.141.09427.3492arabidopsis_thalianaAT1G31360.339.648226.387
AT1G31360arabidopsis_thalianaAT2G24255.127.678611.0119arabidopsis_thalianaAT1G31360.312.58465.00677
AT1G31360arabidopsis_thalianaAT2G16290.120.72298.91566arabidopsis_thalianaAT1G31360.311.63735.00677
AT1G31360arabidopsis_thalianaAT1G64840.127.864612.7604arabidopsis_thalianaAT1G31360.314.4796.63058
AT1G31360arabidopsis_thalianaAT2G16300.122.04979.00621arabidopsis_thalianaAT1G31360.39.607583.92422
AT1G31360arabidopsis_thalianaAT2G17030.121.13029.33661arabidopsis_thalianaAT1G31360.311.63735.14208
AT1G31360arabidopsis_thalianaAT2G17036.120.04957.67327arabidopsis_thalianaAT1G31360.310.96084.19486
AT1G31360arabidopsis_thalianaAT2G24250.227.807513.9037arabidopsis_thalianaAT1G31360.314.07317.03654
AT1G31360arabidopsis_thalianaAT1G27880.128.759617.5631arabidopsis_thalianaAT1G31360.335.453321.6509
AT1G31360arabidopsis_thalianaAT5G24040.124.12879.65147arabidopsis_thalianaAT1G31360.312.17864.87145
AT1G31360arabidopsis_thalianaAT1G65740.124.797810.2426arabidopsis_thalianaAT1G31360.312.44935.14208
AT1G31360arabidopsis_thalianaAT2G17690.121.37778.55107arabidopsis_thalianaAT1G31360.312.17864.87145
AT1G31360arabidopsis_thalianaAT1G65760.125.690610.4972arabidopsis_thalianaAT1G31360.312.58465.14208
AT1G31360arabidopsis_thalianaAT2G26160.124.47139.66767arabidopsis_thalianaAT1G31360.310.96084.33018
AT1G31360arabidopsis_thalianaAT1G44080.123.91936.91643arabidopsis_thalianaAT1G31360.311.23143.24763
AT1G31360arabidopsis_thalianaAT1G65770.123.61118.33333arabidopsis_thalianaAT1G31360.311.5024.05954
AT1G31360arabidopsis_thalianaAT3G25750.225.41449.66851arabidopsis_thalianaAT1G31360.312.44934.73613
AT1G31360arabidopsis_thalianaAT1G57906.118.85967.01754arabidopsis_thalianaAT1G31360.35.818672.16509
AT1G31360arabidopsis_thalianaAT4G35733.124.02238.65922arabidopsis_thalianaAT1G31360.311.63734.19486

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G31360arabidopsis_thalianaAT1G31360.322.733413.9378chondrus_crispusCDF3613144.827.4667
AT1G31360arabidopsis_thalianaAT1G31360.325.169113.5318chondrus_crispusCDF7752839.914221.4592
AT1G31360arabidopsis_thalianaAT1G31360.312.31397.03654chlamydomonas_reinhardtiiPNW8785544.390225.3659
AT1G31360arabidopsis_thalianaAT1G31360.371.718555.4804marchantia_polymorphaPTQ3613461.413747.5087
AT1G31360arabidopsis_thalianaAT1G31360.338.971632.0704papaver_somniferumRZC7393777.211863.5389
AT1G31360arabidopsis_thalianaAT1G31360.379.025768.3356papaver_somniferumRZC6949782.719571.5297
AT1G31360arabidopsis_thalianaAT1G31360.371.583261.1637cannabis_sativa_femalecds.evm.model.09.13286.437973.8562
AT1G31360arabidopsis_thalianaAT1G31360.339.648232.0704ficus_caricaFCD_00013215-RA:cds81.843666.2011
AT1G31360arabidopsis_thalianaAT1G31360.380.108367.1177theobroma_cacaoEOY2544083.497969.9577
AT1G31360arabidopsis_thalianaAT1G31360.377.537264.4114beta_vulgarisKMT1150780.932267.2316
AT1G31360arabidopsis_thalianaAT1G31360.374.424959.134cucumis_meloMELO3C022742.2.170.242755.811
AT1G31360arabidopsis_thalianaAT1G31360.379.56764.5467cucumis_sativusKGN5839383.050867.3729
AT1G31360arabidopsis_thalianaAT1G31360.382.54469.9594populus_trichocarpaPotri.003G104300.2.v4.185.55472.5105
AT1G31360arabidopsis_thalianaAT1G31360.351.691543.3018solanum_lycopersicumSolyc08g074600.3.182.68469.2641
AT1G31360arabidopsis_thalianaAT1G31360.348.985133.8295caenorhabditis_elegansK02F3.12a.157.369339.6197
AT1G31360arabidopsis_thalianaAT1G31360.376.454763.7348lactuca_sativacds-PLY99096.182.122168.4593
AT1G31360arabidopsis_thalianaAT1G31360.363.464152.3681eragrostis_curvulaTVU2328974.208961.2342
AT1G31360arabidopsis_thalianaAT1G31360.380.108364.276citrullus_lanatusCla97C07G130730.183.971667.3759
AT1G31360arabidopsis_thalianaAT1G31360.381.326169.0122vigna_radiataVradi11g08030.183.704771.0306
AT1G31360arabidopsis_thalianaAT1G31360.378.213864.682amborella_trichopodaERN1569381.065967.0407
AT1G31360arabidopsis_thalianaAT1G31360.378.755167.659vigna_unguiculataVigun02g104400.5.v1.282.78871.1238
AT1G31360arabidopsis_thalianaAT1G31360.371.041961.0284prunus_aviumPav_sc0001267.1_g180.1.mk:mrna87.209374.9169
AT1G31360arabidopsis_thalianaAT1G31360.380.514268.6062phaseolus_vulgarisESW3012384.757872.2222
AT1G31360arabidopsis_thalianaAT1G31360.374.424962.5169asparagus_officinalisONK7162174.728362.7717
AT1G31360arabidopsis_thalianaAT1G31360.363.193555.751pisum_sativumPsat2g143000.1.cds86.481576.2963
AT1G31360arabidopsis_thalianaAT1G31360.317.997312.8552pisum_sativumPsat2g143080.2.cds77.777855.5556
AT1G31360arabidopsis_thalianaAT1G31360.375.642863.4641brachypodium_distachyonKQK2351179.403466.6193
AT1G31360arabidopsis_thalianaAT1G31360.339.106932.341quercus_subercds-POE59591.173.350360.6599
AT1G31360arabidopsis_thalianaAT1G31360.393.640192.4222arabidopsis_lyratascaffold_103920.198.295597.017
AT1G31360arabidopsis_thalianaAT1G31360.381.326168.8769capsicum_annuumPHT9330185.127572.0963
AT1G31360arabidopsis_thalianaAT1G31360.381.190868.4709lupinus_angustifoliusOIV9293984.985871.6714
AT1G31360arabidopsis_thalianaAT1G31360.392.016288.3627eutrema_salsugineumESQ3368796.317392.4929
AT1G31360arabidopsis_thalianaAT1G31360.394.04692.2869arabidopsis_hallerig27561.t198.721696.875
AT1G31360arabidopsis_thalianaAT1G31360.381.461469.6888cajanus_cajanC.cajan_32311.t84.788772.5352
AT1G31360arabidopsis_thalianaAT1G31360.322.056818.5386solanum_tuberosumPGSC0003DMT40007614082.323269.1919
AT1G31360arabidopsis_thalianaAT1G31360.375.913463.8701setaria_viridisTKW0279876.222864.1304
AT1G31360arabidopsis_thalianaAT1G31360.375.372164.1407oryza_nivaraONIVA11G23410.165.146255.4386
AT1G31360arabidopsis_thalianaAT1G31360.339.512933.9648ipomoea_trilobaitb06g06690.t180.440869.146
AT1G31360arabidopsis_thalianaAT1G31360.326.38721.9215ipomoea_trilobaitb06g06710.t281.2567.5
AT1G31360arabidopsis_thalianaAT1G31360.370.500760.6225oryza_glumipatulaOGLUM11G23070.175.39864.8336
AT1G31360arabidopsis_thalianaAT1G31360.376.048763.5995zea_maysZm00001eb026880_P00476.986364.3836
AT1G31360arabidopsis_thalianaAT1G31360.325.575120.839lolium_perennecds.KYUSt_chr4.264744234.2222
AT1G31360arabidopsis_thalianaAT1G31360.323.4115.4263lolium_perennecds.KYUSt_chr4.2646958.644138.6441
AT1G31360arabidopsis_thalianaAT1G31360.313.26129.33694chara_brauniiGBG7597952.97337.2973
AT1G31360arabidopsis_thalianaAT1G31360.392.422289.1746arabis_alpinaKFK4490896.332992.9478
AT1G31360arabidopsis_thalianaAT1G31360.346.684730.9878ciona_savignyiENSCSAVP000000188116039.8261
AT1G31360arabidopsis_thalianaAT1G31360.390.121886.4682brassica_junceacds.BjuB07g15910S93.277389.4958
AT1G31360arabidopsis_thalianaAT1G31360.356.698250.0677oryza_brachyanthaOB11G28280.183.632773.8523
AT1G31360arabidopsis_thalianaAT1G31360.380.243668.2003glycine_maxKRH3970385.323772.518
AT1G31360arabidopsis_thalianaAT1G31360.381.732168.4709corymbia_citriodoracds-KAF8024373.185.310771.4689
AT1G31360arabidopsis_thalianaAT1G31360.374.966262.7876triticum_urartuTuG1812G0400001524.01.T0278.805166.0028
AT1G31360arabidopsis_thalianaAT1G31360.374.289663.0582oryza_longistaminataKN539814.1_FGP00976.462464.9025
AT1G31360arabidopsis_thalianaAT1G31360.381.596867.9296fraxinus_excelsiorFRAEX38873_v2_000288690.1.cds85.049470.8039
AT1G31360arabidopsis_thalianaAT1G31360.376.454764.4114avena_sativa_sangAVESA.00010b.r2.1CG0099210.1.CDS80.255767.6136
AT1G31360arabidopsis_thalianaAT1G31360.376.048763.5995avena_sativa_sangAVESA.00010b.r2.7CG0680990.1.CDS79.829566.7614
AT1G31360arabidopsis_thalianaAT1G31360.374.830859.2693musa_acuminataMa04_p34140.277.559661.4306
AT1G31360arabidopsis_thalianaAT1G31360.375.101562.7876hordeum_vulgareHORVU.MOREX.r3.4HG0354110.178.835265.9091
AT1G31360arabidopsis_thalianaAT1G31360.374.695562.5169triticum_turgidumTRITD4Bv1G060480.1378.520665.7184
AT1G31360arabidopsis_thalianaAT1G31360.374.695562.6522triticum_turgidumTRITD4Av1G140430.1978.409165.767
AT1G31360arabidopsis_thalianaAT1G31360.376.319464.276panicum_halliiPUZ4592879.213566.7135
AT1G31360arabidopsis_thalianaAT1G31360.374.695563.3288echinochloa_crusgalliscaffold277.35.cds75.824264.2857
AT1G31360arabidopsis_thalianaAT1G31360.374.966263.0582echinochloa_crusgalliscaffold16.21.cds76.098964.011
AT1G31360arabidopsis_thalianaAT1G31360.320.027115.0203echinochloa_crusgalliscaffold217.35.cds57.364343.0233
AT1G31360arabidopsis_thalianaAT1G31360.381.596869.2828actinidia_chinensisPSS1176085.169572.3164
AT1G31360arabidopsis_thalianaAT1G31360.356.562949.3911citrus_clementinaESR4606389.316277.9915
AT1G31360arabidopsis_thalianaAT1G31360.377.266665.7645oryza_indicaBGIOSGA037911-PA72.646361.8321
AT1G31360arabidopsis_thalianaAT1G31360.367.65952.9093selaginella_moellendorffiiEFJ2271870.323554.993
AT1G31360arabidopsis_thalianaAT1G31360.367.929652.5034selaginella_moellendorffiiEFJ1157870.604854.571
AT1G31360arabidopsis_thalianaAT1G31360.366.576557.6455oryza_sativaOs11t0708600-0173.98564.0602
AT1G31360arabidopsis_thalianaAT1G31360.354.262536.5359homo_sapiensENSP0000041673961.787441.6025
AT1G31360arabidopsis_thalianaAT1G31360.374.695562.6522triticum_aestivumTraesCS4A02G178600.578.409165.767
AT1G31360arabidopsis_thalianaAT1G31360.374.154361.9756triticum_aestivumTraesCS4B02G138800.178.062765.2422
AT1G31360arabidopsis_thalianaAT1G31360.374.966262.6522triticum_aestivumTraesCS4D02G133500.178.805165.8606
AT1G31360arabidopsis_thalianaAT1G31360.373.748363.0582oryza_rufipogonORUFI11G25770.171.80561.3966
AT1G31360arabidopsis_thalianaAT1G31360.375.101563.0582secale_cerealeSECCE4Rv1G0231730.178.835266.1932
AT1G31360arabidopsis_thalianaAT1G31360.379.972968.4709gossypium_raimondiiKJB2689583.122471.1674
AT1G31360arabidopsis_thalianaAT1G31360.379.16165.4939helianthus_annuusmRNA:HanXRQr2_Chr03g012435182.394468.169
AT1G31360arabidopsis_thalianaAT1G31360.377.807866.0352oryza_punctataOPUNC11G20180.167.016356.8765
AT1G31360arabidopsis_thalianaAT1G31360.369.553557.3748eragrostis_tefEt_6A_047238.CDS50.048741.2853
AT1G31360arabidopsis_thalianaAT1G31360.368.064956.8336eragrostis_tefEt_6B_049205.CDS78.348965.4206
AT1G31360arabidopsis_thalianaAT1G31360.377.537264.5467medicago_truncatulaAES9553583.649669.635
AT1G31360arabidopsis_thalianaAT1G31360.332.34126.2517saccharum_spontaneumSspon.01G0015810-1A-mRNA-1:cds64.247352.1505
AT1G31360arabidopsis_thalianaAT1G31360.319.079814.3437saccharum_spontaneumSspon.01G0015810-2B-mRNA-1:cds63.800947.9638
AT1G31360arabidopsis_thalianaAT1G31360.332.476325.1691saccharum_spontaneumSspon.01G0015810-3D-mRNA-1:cds57.279244.3914
AT1G31360arabidopsis_thalianaAT1G31360.375.778163.3288sorghum_bicolorKXG3875578.873265.9155
AT1G31360arabidopsis_thalianaAT1G31360.374.695562.6522triticum_dicoccoidesTRIDC4AG028650.878.520665.8606
AT1G31360arabidopsis_thalianaAT1G31360.374.695562.6522triticum_dicoccoidesTRIDC4BG021710.1578.632565.9544
AT1G31360arabidopsis_thalianaAT1G31360.380.108367.3884coffea_canephoraCDP1860983.615870.339
AT1G31360arabidopsis_thalianaAT1G31360.381.055569.0122manihot_esculentaOAY2434884.724272.1358
AT1G31360arabidopsis_thalianaAT1G31360.379.837667.1177kalanchoe_fedtschenkoiKaladp0588s0004.1.v1.182.981769.7609
AT1G31360arabidopsis_thalianaAT1G31360.324.763220.9743trifolium_pratenseTp57577_TGAC_v2_mRNA2813884.331871.4286
AT1G31360arabidopsis_thalianaAT1G31360.366.170555.0744trifolium_pratenseTp57577_TGAC_v2_mRNA1785378.2465.12
AT1G31360arabidopsis_thalianaAT1G31360.391.47587.8214brassica_rapa_ro18A08p016070.1_BraROA.194.019590.2643
AT1G31360arabidopsis_thalianaAT1G31360.382.002769.0122eucalyptus_grandisKCW7275685.593272.0339
AT1G31360arabidopsis_thalianaAT1G31360.376.860662.3816dioscorea_rotundataDRNTG_07897.178.779563.939
AT1G31360arabidopsis_thalianaAT1G31360.382.002769.5535prunus_persicaONI0567185.835772.8045
AT1G31360arabidopsis_thalianaAT1G31360.376.048763.5995avena_sativa_ot3098cds.AVESA.00001b.r3.7Cg0001891.678.491665.6425
AT1G31360arabidopsis_thalianaAT1G31360.376.454764.4114avena_sativa_ot3098cds.AVESA.00001b.r3.4Dg0000057.580.255767.6136
AT1G31360arabidopsis_thalianaAT1G31360.377.401965.3586chenopodium_quinoaAUR62027305-RA:cds78.679566.4374
AT1G31360arabidopsis_thalianaAT1G31360.374.966263.4641chenopodium_quinoaAUR62007433-RA:cds75.374263.8095
AT1G31360arabidopsis_thalianaAT1G31360.345.737537.4831digitaria_exilisDexi9B01G0024160.1:cds61.121250.0904
AT1G31360arabidopsis_thalianaAT1G31360.342.083935.4533digitaria_exilisDexi9A01G0023990.1:cds74.047662.381
AT1G31360arabidopsis_thalianaAT1G31360.370.500760.7578oryza_barthiiOBART12G13990.175.28964.8844
AT1G31360arabidopsis_thalianaAT1G31360.391.610387.8214brassica_oleraceaBo8g032340.195.756791.7963
AT1G31360arabidopsis_thalianaAT1G31360.371.718560.4871prunus_dulcisVVA1717884.12770.9524
AT1G31360arabidopsis_thalianaAT1G31360.320.43317.0501corylus_avellanaCav03g09400.t180.748767.3797
AT1G31360arabidopsis_thalianaAT1G31360.371.312660.3518leersia_perrieriLPERR04G26430.174.751863.2624
AT1G31360arabidopsis_thalianaAT1G31360.381.190867.3884olea_europaeaOE9A084204C184.50770.1408
AT1G31360arabidopsis_thalianaAT1G31360.381.732170.23pistacia_veracds-EVM0002330.185.070473.0986
AT1G31360arabidopsis_thalianaAT1G31360.391.610387.8214brassica_napusCDY1242081.763378.3816
AT1G31360arabidopsis_thalianaAT1G31360.339.106932.341corchorus_capsularisOMO8108678.961765.3005
AT1G31360arabidopsis_thalianaAT1G31360.369.418159.2693oryza_meridionalisOMERI07G12990.173.390662.6609
AT1G31360arabidopsis_thalianaAT1G31360.392.828190.1218camelina_sativaCsa17g060880.197.029794.2009
AT1G31360arabidopsis_thalianaAT1G31360.390.121887.5507camelina_sativaCsa03g034810.197.084594.3149
AT1G31360arabidopsis_thalianaAT1G31360.390.257187.4154camelina_sativaCsa14g039370.197.230394.1691
AT1G31360arabidopsis_thalianaAT1G31360.374.424962.2463daucus_carotaKZN1189082.212368.7593
AT1G31360arabidopsis_thalianaAT1G31360.381.326168.4709rosa_chinensisPRQ1914785.127571.6714
AT1G31360arabidopsis_thalianaAT1G31360.326.116420.2977juglans_regiacds.Jr02_14370_p173.106156.8182
AT1G31360arabidopsis_thalianaAT1G31360.355.75149.2558juglans_regiacds.Jr02_14350_p190.153279.6499
AT1G31360arabidopsis_thalianaAT1G31360.355.209748.8498juglans_regiacds.Jr02_14340_p190.465680.0443
AT1G31360arabidopsis_thalianaAT1G31360.373.20759.9459nymphaea_colorataNC4G0021090.1:cds77.065563.1054
AT1G31360arabidopsis_thalianaAT1G31360.380.920269.1475vigna_angularisKOM4543685.550873.1044
AT1G31360arabidopsis_thalianaAT1G31360.375.913463.7348setaria_italicaKQK9603078.792166.1517
AT1G31360arabidopsis_thalianaAT1G31360.373.748357.7808physcomitrium_patensPp3c5_19440V3.262.143748.6887
AT1G31360arabidopsis_thalianaAT1G31360.382.949969.0122vitis_viniferaVitvi02g01191_P00182.061668.2731
AT1G31360arabidopsis_thalianaAT1G31360.377.537264.0054cynara_cardunculusKVH9153981.046766.9024

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003676enables nucleic acid binding1IEAArabidopsis_thaliana(3702)Function
GO:0005515enables protein binding1IPIArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0006260involved_in DNA replication1IEAArabidopsis_thaliana(3702)Process
GO:0006281acts_upstream_of_or_within DNA repair2IC,IEAArabidopsis_thaliana(3702)Process
GO:0006310acts_upstream_of_or_within DNA recombination2IC,IEAArabidopsis_thaliana(3702)Process
GO:0009378enables four-way junction helicase activity1IDAArabidopsis_thaliana(3702)Function
GO:0016592part_of mediator complex1IDAArabidopsis_thaliana(3702)Component
GO:0032508acts_upstream_of_or_within DNA duplex unwinding1IDAArabidopsis_thaliana(3702)Process
GO:0043138enables 3-5 DNA helicase activity2IDA,IEAArabidopsis_thaliana(3702)Function

Expression