Description

Ensembl ID AT1G30960 Gene ID 839983 Accession -
Symbol AT1G30960 Alias - Full Name GTP-binding family protein
Status Confidence Length 2533 bases Strand Minus strand
Position 1 : 11037552 - 11040084 RNA binding domain KH_2 , MMR_HSR1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G30960 KH_2 PF07650 4.5e-07 1
AT1G30960 MMR_HSR1 PF01926 1.3e-16 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT1G30960-201 AT1G30960 1624 437aa AT1G30960

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G30960arabidopsis_thalianaAT1G78010.119.82149.46429arabidopsis_thalianaAT1G30960.125.400512.1281
AT1G30960arabidopsis_thalianaAT3G12080.119.00458.89894arabidopsis_thalianaAT1G30960.128.83313.5011
AT1G30960arabidopsis_thalianaAT1G72960.114.46545.66038arabidopsis_thalianaAT1G30960.126.315810.2975
AT1G30960arabidopsis_thalianaAT3G13870.114.33926.10973arabidopsis_thalianaAT1G30960.126.315811.2128
AT1G30960arabidopsis_thalianaAT5G45160.113.30945.51559arabidopsis_thalianaAT1G30960.125.400510.5263
AT1G30960arabidopsis_thalianaAT5G58370.319.354810.1075arabidopsis_thalianaAT1G30960.120.59510.7551
AT1G30960arabidopsis_thalianaAT5G66470.140.515220.8431arabidopsis_thalianaAT1G30960.139.588120.3661
AT1G30960arabidopsis_thalianaAT5G11480.122.32712.2642arabidopsis_thalianaAT1G30960.116.24718.92449
AT1G30960arabidopsis_thalianaAT2G22870.12513.6667arabidopsis_thalianaAT1G30960.117.16259.38215
AT1G30960arabidopsis_thalianaAT5G39960.119.96788.85668arabidopsis_thalianaAT1G30960.128.375312.5858
AT1G30960arabidopsis_thalianaAT1G03160.112.71935.8114arabidopsis_thalianaAT1G30960.126.544612.1281

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G30960arabidopsis_thalianaAT1G30960.156.979440.5034marchantia_polymorphaPTQ4260648.162534.236
AT1G30960arabidopsis_thalianaAT1G30960.175.057259.7254papaver_somniferumRZC6226769.052654.9474
AT1G30960arabidopsis_thalianaAT1G30960.172.082457.6659papaver_somniferumRZC6876167.887954.3103
AT1G30960arabidopsis_thalianaAT1G30960.146.681941.6476ficus_caricaFCD_00026689-RA:cds72.857165
AT1G30960arabidopsis_thalianaAT1G30960.175.972564.9886theobroma_cacaoEOX9684479.425867.9426
AT1G30960arabidopsis_thalianaAT1G30960.177.803264.3021beta_vulgarisKMT1778877.097563.7188
AT1G30960arabidopsis_thalianaAT1G30960.177.803264.7597cucumis_meloMELO3C007034.2.179.069865.814
AT1G30960arabidopsis_thalianaAT1G30960.177.116764.3021cucumis_sativusKGN4950478.372165.3488
AT1G30960arabidopsis_thalianaAT1G30960.179.176267.2769populus_trichocarpaPotri.001G160800.1.v4.180.841168.6916
AT1G30960arabidopsis_thalianaAT1G30960.164.988653.3181solanum_lycopersicumSolyc02g081660.3.138.904131.9178
AT1G30960arabidopsis_thalianaAT1G30960.175.514960.1831lactuca_sativacds-PLY96297.170.815556.4378
AT1G30960arabidopsis_thalianaAT1G30960.138.443926.5446ostreococcus_lucimarinusABP0125958.536640.4181
AT1G30960arabidopsis_thalianaAT1G30960.138.443926.5446ostreococcus_lucimarinusABO9928858.536640.4181
AT1G30960arabidopsis_thalianaAT1G30960.167.276951.0297eragrostis_curvulaTVU4326358.844.6
AT1G30960arabidopsis_thalianaAT1G30960.178.260964.9886citrullus_lanatusCla97C01G025670.179.534966.0465
AT1G30960arabidopsis_thalianaAT1G30960.157.894748.2838vigna_radiataVradi11g11700.158.700748.9559
AT1G30960arabidopsis_thalianaAT1G30960.171.853557.6659amborella_trichopodaERN1495468.859655.2632
AT1G30960arabidopsis_thalianaAT1G30960.172.997761.3272vigna_unguiculataVigun02g016400.1.v1.276.133763.9618
AT1G30960arabidopsis_thalianaAT1G30960.173.91362.2426prunus_aviumPav_sc0004151.1_g020.1.mk:mrna72.421560.9865
AT1G30960arabidopsis_thalianaAT1G30960.122.425618.9931prunus_aviumPav_sc0010065.1_g010.1.mk:mrna80.327968.0328
AT1G30960arabidopsis_thalianaAT1G30960.173.226560.1831phaseolus_vulgarisESW2519077.108463.3735
AT1G30960arabidopsis_thalianaAT1G30960.163.157951.4874asparagus_officinalisONK7201081.899166.7656
AT1G30960arabidopsis_thalianaAT1G30960.174.370763.1579pisum_sativumPsat6g050320.1.cds76.832265.2482
AT1G30960arabidopsis_thalianaAT1G30960.170.709456.2929brachypodium_distachyonKQJ9558272.02857.3427
AT1G30960arabidopsis_thalianaAT1G30960.172.5458.8101quercus_subercds-POE75034.177.88763.145
AT1G30960arabidopsis_thalianaAT1G30960.175.28659.4966ananas_comosusAco006592.1.mrna175.28659.4966
AT1G30960arabidopsis_thalianaAT1G30960.194.279291.9908arabidopsis_lyratascaffold_103475.194.712692.4138
AT1G30960arabidopsis_thalianaAT1G30960.174.370759.0389quercus_lobataQL11p012260:mrna76.650960.8491
AT1G30960arabidopsis_thalianaAT1G30960.175.972561.7849capsicum_annuumPHT9091968.59555.7851
AT1G30960arabidopsis_thalianaAT1G30960.168.649957.8947lupinus_angustifoliusOIW0190378.53466.2304
AT1G30960arabidopsis_thalianaAT1G30960.188.787283.7529eutrema_salsugineumESQ3373788.181883.1818
AT1G30960arabidopsis_thalianaAT1G30960.195.194592.9062arabidopsis_hallerig18856.t194.760892.4829
AT1G30960arabidopsis_thalianaAT1G30960.128.375322.4256cajanus_cajanC.cajan_46304.t61.386148.5149
AT1G30960arabidopsis_thalianaAT1G30960.177.345563.1579solanum_tuberosumPGSC0003DMT40004573876.818262.7273
AT1G30960arabidopsis_thalianaAT1G30960.172.5457.2082setaria_viridisTKW0838072.5457.2082
AT1G30960arabidopsis_thalianaAT1G30960.173.226558.5812oryza_nivaraONIVA08G06170.174.592159.6737
AT1G30960arabidopsis_thalianaAT1G30960.175.743760.6407ipomoea_trilobaitb08g16290.t174.38259.5506
AT1G30960arabidopsis_thalianaAT1G30960.142.791831.3501oryza_glumipatulaOGLUM08G06610.264.261247.079
AT1G30960arabidopsis_thalianaAT1G30960.169.565255.8352zea_maysZm00001eb413810_P00469.565255.8352
AT1G30960arabidopsis_thalianaAT1G30960.170.709455.8352zea_maysZm00001eb171110_P00170.387255.5809
AT1G30960arabidopsis_thalianaAT1G30960.171.395956.7506lolium_perennecds.KYUSt_chr7.2041265.822852.3207
AT1G30960arabidopsis_thalianaAT1G30960.149.885631.1213chara_brauniiGBG6025320.185212.5926
AT1G30960arabidopsis_thalianaAT1G30960.188.100782.8375arabis_alpinaKFK4489090.588285.1765
AT1G30960arabidopsis_thalianaAT1G30960.115.560614.1876brassica_junceacds.BjuA08g09300S86.07678.481
AT1G30960arabidopsis_thalianaAT1G30960.182.379978.032brassica_junceacds.BjuA07g08630S85.510780.9976
AT1G30960arabidopsis_thalianaAT1G30960.116.933615.3318brassica_junceacds.BjuB07g16410S87.058878.8235
AT1G30960arabidopsis_thalianaAT1G30960.185.812481.0069brassica_junceacds.BjuB04g15920S52.155849.2351
AT1G30960arabidopsis_thalianaAT1G30960.163.157951.9451oryza_brachyanthaOB08G16190.182.882968.1682
AT1G30960arabidopsis_thalianaAT1G30960.174.370761.5561glycine_maxKRH4970578.313364.8193
AT1G30960arabidopsis_thalianaAT1G30960.124.71420.8238glycine_maxKRH4530785.039471.6535
AT1G30960arabidopsis_thalianaAT1G30960.175.28661.3272corymbia_citriodoracds-KAF8030705.176.6962.4709
AT1G30960arabidopsis_thalianaAT1G30960.170.480655.6064aegilops_tauschiiAET7Gv20697200.147055.2273
AT1G30960arabidopsis_thalianaAT1G30960.120.137316.0183triticum_urartuTuG1812G0700003139.01.T0187.128769.3069
AT1G30960arabidopsis_thalianaAT1G30960.120.137316.0183triticum_urartuTuG1812G0700003140.01.T0187.128769.3069
AT1G30960arabidopsis_thalianaAT1G30960.144.393635.9268triticum_urartuTuG1812S0000173600.01.T0183.982767.9654
AT1G30960arabidopsis_thalianaAT1G30960.164.988651.7162oryza_longistaminataKN539024.1_FGP00666.355152.8037
AT1G30960arabidopsis_thalianaAT1G30960.176.65963.1579fraxinus_excelsiorFRAEX38873_v2_000174790.2.cds77.188963.5945
AT1G30960arabidopsis_thalianaAT1G30960.171.853556.9794avena_sativa_sangAVESA.00010b.r2.7CG0678300.1.CDS72.183957.2414
AT1G30960arabidopsis_thalianaAT1G30960.146.453135.0114avena_sativa_sangAVESA.00010b.r2.7DG1368360.1.CDS65.273349.1961
AT1G30960arabidopsis_thalianaAT1G30960.172.311257.6659musa_acuminataMa11_p16720.171.171256.7568
AT1G30960arabidopsis_thalianaAT1G30960.173.684258.8101oryza_glaberrimaORGLA08G0054700.173.684258.8101
AT1G30960arabidopsis_thalianaAT1G30960.170.251756.0641hordeum_vulgareHORVU.MOREX.r3.7HG0692500.169.614555.5556
AT1G30960arabidopsis_thalianaAT1G30960.170.251755.1487triticum_turgidumTRITD7Bv1G111870.269.772754.7727
AT1G30960arabidopsis_thalianaAT1G30960.170.709455.1487triticum_turgidumTRITD7Av1G131220.366.883152.1645
AT1G30960arabidopsis_thalianaAT1G30960.172.082456.5217panicum_halliiPUZ5053673.085857.3086
AT1G30960arabidopsis_thalianaAT1G30960.150.343339.1304echinochloa_crusgalliscaffold3.69.cds67.278352.2936
AT1G30960arabidopsis_thalianaAT1G30960.170.938256.7506echinochloa_crusgalliscaffold44.530.cds70.776356.621
AT1G30960arabidopsis_thalianaAT1G30960.170.709456.2929echinochloa_crusgalliscaffold4.368.cds70.547956.1644
AT1G30960arabidopsis_thalianaAT1G30960.165.217451.2586echinochloa_crusgalliscaffold318.43.cds39.74931.2413
AT1G30960arabidopsis_thalianaAT1G30960.177.345566.5904actinidia_chinensisPSS1579278.422367.5174
AT1G30960arabidopsis_thalianaAT1G30960.175.057263.6156citrus_clementinaESR6185477.358565.566
AT1G30960arabidopsis_thalianaAT1G30960.111.899310.7551oryza_indicaBGIOSGA030215-PA75.362368.1159
AT1G30960arabidopsis_thalianaAT1G30960.173.91358.5812oryza_indicaBGIOSGA028189-PA73.91358.5812
AT1G30960arabidopsis_thalianaAT1G30960.151.029737.5286selaginella_moellendorffiiEFJ3250671.935552.9032
AT1G30960arabidopsis_thalianaAT1G30960.153.089237.9863selaginella_moellendorffiiEFJ1670859.948342.8941
AT1G30960arabidopsis_thalianaAT1G30960.173.91358.8101oryza_sativaOs08t0207600-0173.91358.8101
AT1G30960arabidopsis_thalianaAT1G30960.170.480655.6064triticum_aestivumTraesCS7D02G283500.169.841355.102
AT1G30960arabidopsis_thalianaAT1G30960.165.217450.5721triticum_aestivumTraesCS7B02G199400.168.674753.253
AT1G30960arabidopsis_thalianaAT1G30960.170.709455.1487triticum_aestivumTraesCS7A02G287000.167.028252.2777
AT1G30960arabidopsis_thalianaAT1G30960.173.226558.5812oryza_rufipogonORUFI08G06870.169.414355.5315
AT1G30960arabidopsis_thalianaAT1G30960.170.251755.3776secale_cerealeSECCE7Rv1G0490260.170.091355.2511
AT1G30960arabidopsis_thalianaAT1G30960.177.345563.3867gossypium_raimondiiKJB1623277.880263.8249
AT1G30960arabidopsis_thalianaAT1G30960.174.828459.9542helianthus_annuusmRNA:HanXRQr2_Chr05g021947173.154458.613
AT1G30960arabidopsis_thalianaAT1G30960.174.141958.3524oryza_punctataOPUNC08G05890.172.80957.3034
AT1G30960arabidopsis_thalianaAT1G30960.168.649954.0046eragrostis_tefEt_8A_057112.CDS70.422555.3991
AT1G30960arabidopsis_thalianaAT1G30960.166.819252.1739eragrostis_tefEt_8B_059478.CDS69.689754.4153
AT1G30960arabidopsis_thalianaAT1G30960.175.057262.0137medicago_truncatulaAES9497877.909764.3705
AT1G30960arabidopsis_thalianaAT1G30960.164.988652.8604medicago_truncatulaKEH4068272.634359.0793
AT1G30960arabidopsis_thalianaAT1G30960.174.828462.0137medicago_truncatulaKEH2547778.417364.988
AT1G30960arabidopsis_thalianaAT1G30960.168.878754.4622saccharum_spontaneumSspon.06G0009210-4D-mRNA-1:cds69.675955.0926
AT1G30960arabidopsis_thalianaAT1G30960.163.157952.1739saccharum_spontaneumSspon.06G0009210-2B-mRNA-1:cds82.142967.8571
AT1G30960arabidopsis_thalianaAT1G30960.172.082456.0641sorghum_bicolorEES1352172.413856.3218
AT1G30960arabidopsis_thalianaAT1G30960.169.565254.9199triticum_dicoccoidesTRIDC7AG038900.1669.885155.1724
AT1G30960arabidopsis_thalianaAT1G30960.170.251755.1487triticum_dicoccoidesTRIDC7BG031730.169.931754.8975
AT1G30960arabidopsis_thalianaAT1G30960.153.089243.2494coffea_canephoraCDP1819268.639155.9172
AT1G30960arabidopsis_thalianaAT1G30960.122.883320.595coffea_canephoraCDP1819186.956578.2609
AT1G30960arabidopsis_thalianaAT1G30960.172.5457.4371manihot_esculentaOAY5444380.253263.5443
AT1G30960arabidopsis_thalianaAT1G30960.136.384428.3753kalanchoe_fedtschenkoiKaladp0024s0593.1.v1.167.948752.9915
AT1G30960arabidopsis_thalianaAT1G30960.120.823816.2471kalanchoe_fedtschenkoiKaladp0970s0002.1.v1.165.94251.4493
AT1G30960arabidopsis_thalianaAT1G30960.164.302154.4622trifolium_pratenseTp57577_TGAC_v2_mRNA3574486.196373.0061
AT1G30960arabidopsis_thalianaAT1G30960.118.306614.6453trifolium_pratenseTp57577_TGAC_v2_mRNA64370.796556.6372
AT1G30960arabidopsis_thalianaAT1G30960.182.837578.032brassica_rapa_ro18A07p013930.1_BraROA.187.651382.5666
AT1G30960arabidopsis_thalianaAT1G30960.183.52479.1762brassica_rapa_ro18A09p045720.1_BraROA.186.904882.381
AT1G30960arabidopsis_thalianaAT1G30960.153.318145.3089eucalyptus_grandisKCW7564987.924574.717
AT1G30960arabidopsis_thalianaAT1G30960.171.395956.5217dioscorea_rotundataDRNTG_13982.371.889456.9124
AT1G30960arabidopsis_thalianaAT1G30960.174.141962.4714prunus_persicaONI1163574.654462.9032
AT1G30960arabidopsis_thalianaAT1G30960.125.400521.0526prunus_persicaONI1163972.077959.7403
AT1G30960arabidopsis_thalianaAT1G30960.171.395956.7506avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0001552.171.724157.0115
AT1G30960arabidopsis_thalianaAT1G30960.171.395956.9794avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0002554.171.724157.2414
AT1G30960arabidopsis_thalianaAT1G30960.171.853556.9794avena_sativa_ot3098cds.AVESA.00001b.r3.7Cg0002015.167.818653.7797
AT1G30960arabidopsis_thalianaAT1G30960.149.656741.6476chenopodium_quinoaAUR62043831-RA:cds88.571474.2857
AT1G30960arabidopsis_thalianaAT1G30960.149.427941.8764chenopodium_quinoaAUR62020653-RA:cds87.096873.7903
AT1G30960arabidopsis_thalianaAT1G30960.158.352450.1144chenopodium_quinoaAUR62038720-RA:cds87.93175.5172
AT1G30960arabidopsis_thalianaAT1G30960.157.894743.4783digitaria_exilisDexi6A01G0007580.1:cds68.194151.2129
AT1G30960arabidopsis_thalianaAT1G30960.157.894743.9359digitaria_exilisDexi6B01G0006270.1:cds66.754650.6596
AT1G30960arabidopsis_thalianaAT1G30960.157.665947.8261oryza_barthiiOBART08G06120.286.597971.8213
AT1G30960arabidopsis_thalianaAT1G30960.184.439480.0915brassica_oleraceaBo7g041210.188.066883.5322
AT1G30960arabidopsis_thalianaAT1G30960.183.52478.9474brassica_oleraceaBo5g065600.187.320682.5359
AT1G30960arabidopsis_thalianaAT1G30960.115.10313.9588prunus_dulcisVVA2206492.957785.9155
AT1G30960arabidopsis_thalianaAT1G30960.174.141962.4714prunus_dulcisVVA2206174.654462.9032
AT1G30960arabidopsis_thalianaAT1G30960.136.613331.5789corylus_avellanaCav02g18030.t192.485579.7688
AT1G30960arabidopsis_thalianaAT1G30960.170.709455.8352leersia_perrieriLPERR08G05720.172.535257.277
AT1G30960arabidopsis_thalianaAT1G30960.130.434822.6545olea_europaeaOE9A105837C163.942347.5962
AT1G30960arabidopsis_thalianaAT1G30960.176.887962.2426olea_europaeaOE9A003732C177.241462.5287
AT1G30960arabidopsis_thalianaAT1G30960.174.599564.5309pistacia_veracds-EVM0021311.178.554267.9518
AT1G30960arabidopsis_thalianaAT1G30960.182.837578.4897brassica_napusCDX7756287.651383.0508
AT1G30960arabidopsis_thalianaAT1G30960.184.668279.8627brassica_napusCDY0234887.264282.3113
AT1G30960arabidopsis_thalianaAT1G30960.183.752979.6339brassica_napusCDX9823287.350883.0549
AT1G30960arabidopsis_thalianaAT1G30960.182.379978.4897brassica_napusCDY4317786.124482.0574
AT1G30960arabidopsis_thalianaAT1G30960.177.803264.9886corchorus_capsularisOMO8003780.188766.9811
AT1G30960arabidopsis_thalianaAT1G30960.173.226558.5812oryza_meridionalisOMERI08G06140.174.592159.6737
AT1G30960arabidopsis_thalianaAT1G30960.193.821590.8467camelina_sativaCsa14g039100.194.252991.2644
AT1G30960arabidopsis_thalianaAT1G30960.191.990888.1007camelina_sativaCsa03g034370.182.040878.5714
AT1G30960arabidopsis_thalianaAT1G30960.194.279291.3043camelina_sativaCsa17g048450.193.849790.8884
AT1G30960arabidopsis_thalianaAT1G30960.175.28663.8444malus_domestica_goldenmRNA:MD05G020710076.157464.5833
AT1G30960arabidopsis_thalianaAT1G30960.175.743764.9886malus_domestica_goldenmRNA:MD10G019170076.620465.7407
AT1G30960arabidopsis_thalianaAT1G30960.174.370761.7849daucus_carotaKZN0821075.231562.5
AT1G30960arabidopsis_thalianaAT1G30960.174.599562.0137rosa_chinensisPRQ3011375.990763.1702
AT1G30960arabidopsis_thalianaAT1G30960.177.803264.0732juglans_regiacds.Jr04_08680_p178.521964.6651
AT1G30960arabidopsis_thalianaAT1G30960.178.03264.5309juglans_regiacds.Jr03_16430_p178.752965.127
AT1G30960arabidopsis_thalianaAT1G30960.172.311255.6064nymphaea_colorataNC2G0288150.1:cds59.622645.8491
AT1G30960arabidopsis_thalianaAT1G30960.167.963456.2929vigna_angularisKOM3040575.765362.7551
AT1G30960arabidopsis_thalianaAT1G30960.172.082456.7506setaria_italicaKQL0041572.082456.7506
AT1G30960arabidopsis_thalianaAT1G30960.153.089237.2998physcomitrium_patensPp3c8_14960V3.256.585439.7561
AT1G30960arabidopsis_thalianaAT1G30960.178.260966.1327vitis_viniferaVitvi01g00097_P00180.851168.3215
AT1G30960arabidopsis_thalianaAT1G30960.176.65960.4119cynara_cardunculusKVH9962672.668157.2668

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005739located_in mitochondrion1IDAArabidopsis_thaliana(3702)Component
GO:0097177enables mitochondrial ribosome binding1IDAArabidopsis_thaliana(3702)Function

Expression