Description

Ensembl ID AT1G29940 Gene ID 839872 Accession -
Symbol NRPA2 Alias - Full Name nuclear RNA polymerase A2
Status Confidence Length 7818 bases Strand Minus strand
Position 1 : 10479007 - 10486824 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G29940 RNA_pol_Rpb2_1 PF04563 9.9e-25 1
AT1G29940 RNA_pol_Rpb2_7 PF04560 6.6e-23 2
AT1G29940 RNA_pol_Rpb2_2 PF04561 2.6e-10 3
AT1G29940 RNA_pol_Rpb2_3 PF04565 1.1e-24 4
AT1G29940 RNA_pol_Rpa2_4 PF06883 1.5e-17 5
AT1G29940 RNA_pol_Rpb2_6 PF00562 1.7e-105 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
NRPA2-201 AT1G29940 4006 1178aa AT1G29940

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G29940arabidopsis_thalianaAT5G45140.242.721825.8398arabidopsis_thalianaAT1G29940.142.105325.4669
AT1G29940arabidopsis_thalianaATCG00190.132.742516.8843arabidopsis_thalianaAT1G29940.129.796315.365
AT1G29940arabidopsis_thalianaAT4G21710.140.993325.8418arabidopsis_thalianaAT1G29940.141.341326.0611
AT1G29940arabidopsis_thalianaAT3G23780.240.102424.0614arabidopsis_thalianaAT1G29940.139.898123.9389
AT1G29940arabidopsis_thalianaAT3G18090.141.516625.4976arabidopsis_thalianaAT1G29940.137.181722.8353

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G29940arabidopsis_thalianaAT1G29940.153.8236.5874chondrus_crispusCDF3391350.882834.5907
AT1G29940arabidopsis_thalianaAT1G29940.153.310740.2377chlamydomonas_reinhardtiiPNW8054859.980945.2722
AT1G29940arabidopsis_thalianaAT1G29940.168.930452.9711marchantia_polymorphaPTQ4880968.292752.4811
AT1G29940arabidopsis_thalianaAT1G29940.111.37529.42275marchantia_polymorphaPTQ2624874.033161.326
AT1G29940arabidopsis_thalianaAT1G29940.174.872759.5925papaver_somniferumRZC7767679.032362.9032
AT1G29940arabidopsis_thalianaAT1G29940.179.032365.8744cannabis_sativa_femalecds.evm.model.04.1984.253470.2262
AT1G29940arabidopsis_thalianaAT1G29940.183.955970.2886ficus_caricaFCD_00022316-RA:cds84.457770.7088
AT1G29940arabidopsis_thalianaAT1G29940.183.955970.3735ficus_caricaFCD_00035519-RA:cds84.457770.7942
AT1G29940arabidopsis_thalianaAT1G29940.183.191869.3548theobroma_cacaoEOY1964783.050869.2373
AT1G29940arabidopsis_thalianaAT1G29940.179.456765.1104beta_vulgarisKMT1698279.931765.4996
AT1G29940arabidopsis_thalianaAT1G29940.183.616370.2886cucumis_meloMELO3C011383.2.183.972770.5882
AT1G29940arabidopsis_thalianaAT1G29940.182.088368.8455cucumis_sativusKGN4775677.174864.7247
AT1G29940arabidopsis_thalianaAT1G29940.183.87168.9304populus_trichocarpaPotri.001G030750.1.v4.184.228569.2242
AT1G29940arabidopsis_thalianaAT1G29940.182.173268.3362solanum_lycopersicumSolyc01g086710.3.181.756867.9899
AT1G29940arabidopsis_thalianaAT1G29940.155.517836.5874caenorhabditis_elegansF14B4.3.158.030238.2431
AT1G29940arabidopsis_thalianaAT1G29940.179.626564.8557lactuca_sativacds-PLY74530.181.921466.7249
AT1G29940arabidopsis_thalianaAT1G29940.155.687639.1341ostreococcus_lucimarinusABO9469857.292640.262
AT1G29940arabidopsis_thalianaAT1G29940.175.297159.9321eragrostis_curvulaTVU3218572.526657.7269
AT1G29940arabidopsis_thalianaAT1G29940.123.938919.3548eragrostis_curvulaTVU0156566.042253.3958
AT1G29940arabidopsis_thalianaAT1G29940.175.297163.7521citrullus_lanatusCla97C08G153700.186.621173.3398
AT1G29940arabidopsis_thalianaAT1G29940.178.098565.4499vigna_radiataVradi0268s00090.182.511269.148
AT1G29940arabidopsis_thalianaAT1G29940.139.813233.0221amborella_trichopodaERN0473472.04359.7542
AT1G29940arabidopsis_thalianaAT1G29940.182.767468.9304vigna_unguiculataVigun11g014200.1.v1.282.978769.1064
AT1G29940arabidopsis_thalianaAT1G29940.182.173268.7606prunus_aviumPav_sc0001196.1_g580.1.mk:mrna81.756868.4122
AT1G29940arabidopsis_thalianaAT1G29940.182.852369.6095phaseolus_vulgarisESW0569082.711969.4915
AT1G29940arabidopsis_thalianaAT1G29940.173.0959.253asparagus_officinalisONK7374779.208864.2134
AT1G29940arabidopsis_thalianaAT1G29940.155.34846.18pisum_sativumPsat2g146640.1.cds76.615763.9248
AT1G29940arabidopsis_thalianaAT1G29940.174.533158.8285brachypodium_distachyonPNT6764073.3557.8947
AT1G29940arabidopsis_thalianaAT1G29940.125.551821.7317quercus_subercds-POE71336.185.511472.7273
AT1G29940arabidopsis_thalianaAT1G29940.175.721664.5161quercus_subercds-POE55406.174.333363.3333
AT1G29940arabidopsis_thalianaAT1G29940.170.882957.725ananas_comosusAco007652.1.mrna179.523864.7619
AT1G29940arabidopsis_thalianaAT1G29940.197.962695.6706arabidopsis_lyratafgenesh1_pm.C_scaffold_100241997.13894.8653
AT1G29940arabidopsis_thalianaAT1G29940.184.040770.8829quercus_lobataQL04p021099:mrna77.586265.4389
AT1G29940arabidopsis_thalianaAT1G29940.129.117122.7504quercus_lobataQL93p0049_0007:mrna69.433254.251
AT1G29940arabidopsis_thalianaAT1G29940.180.390566.2988capsicum_annuumPHT9461182.852168.329
AT1G29940arabidopsis_thalianaAT1G29940.182.512769.3548lupinus_angustifoliusOIW0812082.723469.5319
AT1G29940arabidopsis_thalianaAT1G29940.193.803187.4363eutrema_salsugineumESQ3388593.406687.0668
AT1G29940arabidopsis_thalianaAT1G29940.191.341384.1256eutrema_salsugineumESQ3388691.109283.9119
AT1G29940arabidopsis_thalianaAT1G29940.197.962695.7555arabidopsis_hallerig26327.t197.13894.9495
AT1G29940arabidopsis_thalianaAT1G29940.175.38260.1019setaria_viridisTKV9312175.318160.0509
AT1G29940arabidopsis_thalianaAT1G29940.172.665557.3005oryza_nivaraONIVA10G16280.176.088960
AT1G29940arabidopsis_thalianaAT1G29940.181.578967.8268ipomoea_trilobaitb09g15600.t181.302967.5973
AT1G29940arabidopsis_thalianaAT1G29940.170.203755.0085oryza_glumipatulaOGLUM10G14320.175.732659.3407
AT1G29940arabidopsis_thalianaAT1G29940.176.230959.7623zea_maysZm00001eb044710_P00176.230959.7623
AT1G29940arabidopsis_thalianaAT1G29940.179.881267.2326sesamum_indicumSIN_1008218.t85.390271.8693
AT1G29940arabidopsis_thalianaAT1G29940.171.477156.1121lolium_perennecds.KYUSt_chr1.1918469.471954.538
AT1G29940arabidopsis_thalianaAT1G29940.156.027242.3599chara_brauniiGBG8444767.553751.0747
AT1G29940arabidopsis_thalianaAT1G29940.192.869387.3514arabis_alpinaKFK4481992.948287.4257
AT1G29940arabidopsis_thalianaAT1G29940.191.680885.399brassica_junceacds.BjuA07g09140S91.680885.399
AT1G29940arabidopsis_thalianaAT1G29940.114.940614.3463brassica_junceacds.BjuA07g09170S92.146688.4817
AT1G29940arabidopsis_thalianaAT1G29940.191.595985.6536brassica_junceacds.BjuB03g31090S90.672384.7899
AT1G29940arabidopsis_thalianaAT1G29940.174.787858.8285oryza_brachyanthaOB10G21550.175.882959.6899
AT1G29940arabidopsis_thalianaAT1G29940.183.276769.7793glycine_maxKRH0474183.489469.9574
AT1G29940arabidopsis_thalianaAT1G29940.183.531470.2037glycine_maxKRH2066683.744770.383
AT1G29940arabidopsis_thalianaAT1G29940.152.886234.8048cyanidioschyzon_merolaeCMS114CT53.021334.8936
AT1G29940arabidopsis_thalianaAT1G29940.183.531470.7131corymbia_citriodoracds-KAF8022183.183.81670.954
AT1G29940arabidopsis_thalianaAT1G29940.174.448259.0832aegilops_tauschiiAET1Gv20420300.173.883758.6352
AT1G29940arabidopsis_thalianaAT1G29940.171.986457.3005triticum_urartuTuG1812G0100001813.01.T0276.396460.8108
AT1G29940arabidopsis_thalianaAT1G29940.166.044150.9338oryza_longistaminataKN539297.1_FGP01347.151536.3636
AT1G29940arabidopsis_thalianaAT1G29940.124.787819.2699fraxinus_excelsiorFRAEX38873_v2_000046510.1.cds73.551657.1788
AT1G29940arabidopsis_thalianaAT1G29940.182.852368.8455fraxinus_excelsiorFRAEX38873_v2_000071550.1.cds82.362968.4388
AT1G29940arabidopsis_thalianaAT1G29940.117.996615.1952avena_sativa_sangAVESA.00010b.r2.1AG0063660.1.CDS8067.5472
AT1G29940arabidopsis_thalianaAT1G29940.117.996615.1952avena_sativa_sangAVESA.00010b.r2.1DG0182210.1.CDS8067.5472
AT1G29940arabidopsis_thalianaAT1G29940.175.551859.7623avena_sativa_sangAVESA.00010b.r2.1CG0091690.1.CDS75.232559.5097
AT1G29940arabidopsis_thalianaAT1G29940.178.098563.9219musa_acuminataMa08_p23670.178.699764.414
AT1G29940arabidopsis_thalianaAT1G29940.174.448259.0832triticum_turgidumTRITD1Bv1G105900.573.821558.5859
AT1G29940arabidopsis_thalianaAT1G29940.174.61859.253triticum_turgidumTRITD1Av1G105410.374.052258.8037
AT1G29940arabidopsis_thalianaAT1G29940.175.891360.1019panicum_halliiPUZ3845475.634559.8985
AT1G29940arabidopsis_thalianaAT1G29940.175.721659.9321echinochloa_crusgalliscaffold112.311.cds70.906256.1208
AT1G29940arabidopsis_thalianaAT1G29940.116.468613.5823echinochloa_crusgalliscaffold268.1.cds80.833366.6667
AT1G29940arabidopsis_thalianaAT1G29940.175.466959.7623echinochloa_crusgalliscaffold27.642.cds74.831659.2593
AT1G29940arabidopsis_thalianaAT1G29940.183.786169.7793actinidia_chinensisPSS0991378.147365.0831
AT1G29940arabidopsis_thalianaAT1G29940.178.777666.4686citrus_clementinaESR4136685.767172.366
AT1G29940arabidopsis_thalianaAT1G29940.171.56256.5365oryza_indicaBGIOSGA031619-PA77.624361.326
AT1G29940arabidopsis_thalianaAT1G29940.165.619748.3871selaginella_moellendorffiiEFJ3514668.650150.6217
AT1G29940arabidopsis_thalianaAT1G29940.168.081550.1698selaginella_moellendorffiiEFJ0445768.4350.4266
AT1G29940arabidopsis_thalianaAT1G29940.143.293733.6163selaginella_moellendorffiiEFJ2409673.699457.2254
AT1G29940arabidopsis_thalianaAT1G29940.150.76439.3039oryza_sativaOs10t0495600-0174.656757.8027
AT1G29940arabidopsis_thalianaAT1G29940.157.045840.5773homo_sapiensENSP0000026333159.207142.1145
AT1G29940arabidopsis_thalianaAT1G29940.174.533159.253triticum_aestivumTraesCS1A02G163400.273.96858.8037
AT1G29940arabidopsis_thalianaAT1G29940.174.448259.0832triticum_aestivumTraesCS1D02G160000.173.883758.6352
AT1G29940arabidopsis_thalianaAT1G29940.174.448259.0832triticum_aestivumTraesCS1B02G179900.169.936255.5024
AT1G29940arabidopsis_thalianaAT1G29940.170.203755.0085oryza_rufipogonORUFI10G15380.175.732659.3407
AT1G29940arabidopsis_thalianaAT1G29940.171.816657.2156secale_cerealeSECCE1Rv1G0026170.176.216260.7207
AT1G29940arabidopsis_thalianaAT1G29940.183.022169.0153gossypium_raimondiiKJB7317783.022169.0153
AT1G29940arabidopsis_thalianaAT1G29940.180.475465.0255helianthus_annuusmRNA:HanXRQr2_Chr04g017893178.934263.7802
AT1G29940arabidopsis_thalianaAT1G29940.172.071357.1307oryza_punctataOPUNC10G12900.144.543535.3095
AT1G29940arabidopsis_thalianaAT1G29940.163.242849.0662eragrostis_tefEt_1B_011861.CDS73.471457.002
AT1G29940arabidopsis_thalianaAT1G29940.170.79855.9423eragrostis_tefEt_1A_007062.CDS75.543559.692
AT1G29940arabidopsis_thalianaAT1G29940.180.7366.2988medicago_truncatulaAES9208179.848965.5751
AT1G29940arabidopsis_thalianaAT1G29940.119.354815.6197saccharum_spontaneumSspon.01G0020480-2B-mRNA-1:cds69.724856.2691
AT1G29940arabidopsis_thalianaAT1G29940.125.551820.7131saccharum_spontaneumSspon.01G0020480-1A-mRNA-1:cds76.590362.0865
AT1G29940arabidopsis_thalianaAT1G29940.176.315859.7623sorghum_bicolorEES0439376.903360.2224
AT1G29940arabidopsis_thalianaAT1G29940.174.363359.0832triticum_dicoccoidesTRIDC1BG029990.270.988756.4019
AT1G29940arabidopsis_thalianaAT1G29940.174.61859.253triticum_dicoccoidesTRIDC1AG025010.174.052258.8037
AT1G29940arabidopsis_thalianaAT1G29940.182.258168.4211coffea_canephoraCDP0793880.148966.6667
AT1G29940arabidopsis_thalianaAT1G29940.184.465270.8829manihot_esculentaOAY5335484.393670.8227
AT1G29940arabidopsis_thalianaAT1G29940.179.541666.3837kalanchoe_fedtschenkoiKaladp0095s0372.1.v1.178.805765.7696
AT1G29940arabidopsis_thalianaAT1G29940.179.032364.1766trifolium_pratenseTp57577_TGAC_v2_mRNA882969.374156.3338
AT1G29940arabidopsis_thalianaAT1G29940.117.402416.4686brassica_rapa_ro18A07g504580.1_BraROA.192.342387.3874
AT1G29940arabidopsis_thalianaAT1G29940.192.27585.9932brassica_rapa_ro18A07p014810.1_BraROA.189.686583.5809
AT1G29940arabidopsis_thalianaAT1G29940.183.191870.8829eucalyptus_grandisKCW6588183.546571.185
AT1G29940arabidopsis_thalianaAT1G29940.177.419462.2241dioscorea_rotundataDRNTG_05264.178.283362.9185
AT1G29940arabidopsis_thalianaAT1G29940.182.258169.1002prunus_persicaONI3619781.841268.75
AT1G29940arabidopsis_thalianaAT1G29940.175.551859.7623avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0001240.374.915859.2593
AT1G29940arabidopsis_thalianaAT1G29940.175.042459.7623avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000602.274.725359.5097
AT1G29940arabidopsis_thalianaAT1G29940.175.127359.8472avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000634.274.120659.0452
AT1G29940arabidopsis_thalianaAT1G29940.177.67462.8183chenopodium_quinoaAUR62029096-RA:cds80.830465.371
AT1G29940arabidopsis_thalianaAT1G29940.172.920258.1494digitaria_exilisDexi9B01G0018990.1:cds75.883460.5124
AT1G29940arabidopsis_thalianaAT1G29940.173.259858.3192digitaria_exilisDexi9A01G0019430.1:cds73.823858.7682
AT1G29940arabidopsis_thalianaAT1G29940.170.203755.0085oryza_barthiiOBART10G14420.175.732659.3407
AT1G29940arabidopsis_thalianaAT1G29940.192.27586.163brassica_oleraceaBo7g044890.191.498385.4377
AT1G29940arabidopsis_thalianaAT1G29940.182.258169.1851prunus_dulcisVVA3207181.841268.8345
AT1G29940arabidopsis_thalianaAT1G29940.154.923637.9457galdieria_sulphurariaEME3271152.989436.6093
AT1G29940arabidopsis_thalianaAT1G29940.112.903210.3565corylus_avellanaCav01g31880.t174.876860.0985
AT1G29940arabidopsis_thalianaAT1G29940.170.713155.8574leersia_perrieriLPERR10G10880.176.282160.2564
AT1G29940arabidopsis_thalianaAT1G29940.182.597668.4211nicotiana_attenuataOIT0320879.688866.0115
AT1G29940arabidopsis_thalianaAT1G29940.155.687645.7555olea_europaeaOE9A079854C380.195665.8924
AT1G29940arabidopsis_thalianaAT1G29940.168.336254.9236olea_europaeaOE9A017948C275.515960.6942
AT1G29940arabidopsis_thalianaAT1G29940.158.658740.6621saccharomyces_cerevisiaeYPR010C57.439739.8171
AT1G29940arabidopsis_thalianaAT1G29940.150.509342.5297pistacia_veracds-EVM0015223.185.734972.1902
AT1G29940arabidopsis_thalianaAT1G29940.155.432937.2666drosophila_melanogasterFBpp007771457.838838.884
AT1G29940arabidopsis_thalianaAT1G29940.192.27585.9083brassica_napusCDY4319991.807485.473
AT1G29940arabidopsis_thalianaAT1G29940.192.105386.0781brassica_napusCDX9815991.638585.6419
AT1G29940arabidopsis_thalianaAT1G29940.117.996616.9779brassica_napusCDY4319694.642989.2857
AT1G29940arabidopsis_thalianaAT1G29940.178.947465.4499corchorus_capsularisOMO5131282.373868.2905
AT1G29940arabidopsis_thalianaAT1G29940.171.222456.3667oryza_meridionalisOMERI10G11250.174.644159.0747
AT1G29940arabidopsis_thalianaAT1G29940.195.670691.3413camelina_sativaCsa17g042870.194.705990.4202
AT1G29940arabidopsis_thalianaAT1G29940.195.755591.4261camelina_sativaCsa03g033100.192.232288.0621
AT1G29940arabidopsis_thalianaAT1G29940.193.633389.6435camelina_sativaCsa14g037490.181.342277.8761
AT1G29940arabidopsis_thalianaAT1G29940.180.7368.9304malus_domestica_goldenmRNA:MD08G019750081.421269.5205
AT1G29940arabidopsis_thalianaAT1G29940.179.286963.7521daucus_carotaKZM9614077.253962.1175
AT1G29940arabidopsis_thalianaAT1G29940.181.748768.2513rosa_chinensisPRQ5664981.610268.1356
AT1G29940arabidopsis_thalianaAT1G29940.182.852369.4397juglans_regiacds.Jr16_07280_p183.134669.6763
AT1G29940arabidopsis_thalianaAT1G29940.173.769158.1494nymphaea_colorataNC1G0288590.1:cds69.687254.9318
AT1G29940arabidopsis_thalianaAT1G29940.182.427868.7606vigna_angularisKOM3645582.638368.9362
AT1G29940arabidopsis_thalianaAT1G29940.113.242811.1205setaria_italicaKQK8852581.2568.2292
AT1G29940arabidopsis_thalianaAT1G29940.15.602723.56537physcomitrium_patensPAC:32922743.CDS.144.89828.5714
AT1G29940arabidopsis_thalianaAT1G29940.183.87170.5433vitis_viniferaVitvi13g01355_P00184.156770.7836
AT1G29940arabidopsis_thalianaAT1G29940.177.504262.9032cynara_cardunculusKVI1138480.228565.1142

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003677enables DNA binding1IEAArabidopsis_thaliana(3702)Function
GO:0009507located_in chloroplast1ISMArabidopsis_thaliana(3702)Component
GO:0009561involved_in megagametogenesis1IMPArabidopsis_thaliana(3702)Process
GO:0032549enables ribonucleoside binding1IEAArabidopsis_thaliana(3702)Function

Expression