Description

Ensembl ID AT1G16740 Gene ID 838245 Accession -
Symbol AT1G16740 Alias - Full Name Ribosomal protein L20
Status Confidence Length 1494 bases Strand Plus strand
Position 1 : 5727622 - 5729115 RNA binding domain Ribosomal_L20
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G16740 Ribosomal_L20 PF00453 9.3e-41 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT1G16740-201 AT1G16740 697 126aa AT1G16740

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G16740arabidopsis_thalianaATCG00660.147.008528.2051arabidopsis_thalianaAT1G16740.143.650826.1905

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G16740arabidopsis_thalianaAT1G16740.155.555636.5079chondrus_crispusCCP3815661.403540.3509
AT1G16740arabidopsis_thalianaAT1G16740.163.492149.2063chlamydomonas_reinhardtiiPNW8896469.565253.913
AT1G16740arabidopsis_thalianaAT1G16740.177.777869.0476marchantia_polymorphaPTQ4965185.217475.6522
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587papaver_somniferumRZC8373688.888980.1587
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587papaver_somniferumRZC7648888.888980.1587
AT1G16740arabidopsis_thalianaAT1G16740.192.063583.3333cannabis_sativa_femalecds.novel_model_871_5bd9a17a.5.5bd9b13492.884
AT1G16740arabidopsis_thalianaAT1G16740.191.269885.7143ficus_caricaFCD_00018680-RA:cds9286.4
AT1G16740arabidopsis_thalianaAT1G16740.193.650885.7143theobroma_cacaoEOY2618794.486.4
AT1G16740arabidopsis_thalianaAT1G16740.188.888979.3651beta_vulgarisKMT1351091.803381.9672
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746beta_vulgarisKMT2066893.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.189.682581.746cucumis_meloMELO3C019631.2.190.482.4
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.9524cucumis_sativusKGN4679490.481.6
AT1G16740arabidopsis_thalianaAT1G16740.195.238187.3016populus_trichocarpaPotri.017G119300.1.v4.195.238187.3016
AT1G16740arabidopsis_thalianaAT1G16740.190.476280.9524solanum_lycopersicumSolyc02g069840.3.178.620770.3448
AT1G16740arabidopsis_thalianaAT1G16740.144.444418.254caenorhabditis_elegansY48C3A.10.129.319412.0419
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.1587lactuca_sativacds-PLY85733.190.480.8
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.1587lactuca_sativacds-PLY93088.190.480.8
AT1G16740arabidopsis_thalianaAT1G16740.166.666753.1746ostreococcus_lucimarinusABP0105776.363660.9091
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.1587eragrostis_curvulaTVU3520791.735583.4711
AT1G16740arabidopsis_thalianaAT1G16740.189.682581.746eragrostis_curvulaTVU2049491.869983.7398
AT1G16740arabidopsis_thalianaAT1G16740.189.682581.746citrullus_lanatusCla97C02G044640.190.482.4
AT1G16740arabidopsis_thalianaAT1G16740.186.507980.1587amborella_trichopodaERN0957587.280.8
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746vigna_unguiculataVigun09g066300.1.v1.292.56285.124
AT1G16740arabidopsis_thalianaAT1G16740.152.38147.619prunus_aviumPav_sc0010928.1_g020.1.br:CDS:178.571471.4286
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746phaseolus_vulgarisESW1029292.56285.124
AT1G16740arabidopsis_thalianaAT1G16740.188.095279.3651pisum_sativumPsat2g023600.2.cds91.735582.6446
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587brachypodium_distachyonKQK0960491.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587brachypodium_distachyonKQK0526592.56283.4711
AT1G16740arabidopsis_thalianaAT1G16740.156.349250quercus_subercds-POE97008.171.717263.6364
AT1G16740arabidopsis_thalianaAT1G16740.189.682583.3333quercus_subercds-POE74160.173.376668.1818
AT1G16740arabidopsis_thalianaAT1G16740.189.682581.746ananas_comosusAco019202.1.mrna186.259578.626
AT1G16740arabidopsis_thalianaAT1G16740.110099.2064arabidopsis_lyrataAl_scaffold_0001_173210099.2064
AT1G16740arabidopsis_thalianaAT1G16740.151.587346.0317quercus_lobataQL06p000079:mrna80.246971.6049
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.9524capsicum_annuumPHT8993789.682580.9524
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524lupinus_angustifoliusOIW1625092.56284.2975
AT1G16740arabidopsis_thalianaAT1G16740.189.682581.746lupinus_angustifoliusOIW0277293.388485.124
AT1G16740arabidopsis_thalianaAT1G16740.199.206498.4127eutrema_salsugineumESQ3513899.206498.4127
AT1G16740arabidopsis_thalianaAT1G16740.110099.2064arabidopsis_hallerig09920.t110099.2064
AT1G16740arabidopsis_thalianaAT1G16740.151.587345.2381cajanus_cajanC.cajan_47147.t.cds190.277879.1667
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746solanum_tuberosumPGSC0003DMT40005460691.282.4
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746setaria_viridisTKW2624191.803384.4262
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524setaria_viridisTKW1661292.56284.2975
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746oryza_nivaraONIVA08G22150.192.56285.124
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.1587oryza_nivaraONIVA01G34260.160.98955.4945
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746ipomoea_trilobaitb04g05910.t191.282.4
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746oryza_glumipatulaOGLUM05G24870.192.56285.124
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746zea_maysZm00001eb353650_P00291.803384.4262
AT1G16740arabidopsis_thalianaAT1G16740.153.174648.4127zea_maysZm00001eb154030_P00188.157980.2632
AT1G16740arabidopsis_thalianaAT1G16740.186.507977.7778sesamum_indicumSIN_1019575.t87.903279.0323
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587lolium_perennecds.KYUSt_chr1.3626091.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.167.460349.2063chara_brauniiGBG8934435.564925.9414
AT1G16740arabidopsis_thalianaAT1G16740.198.412796.8254arabis_alpinaKFK4387798.412796.8254
AT1G16740arabidopsis_thalianaAT1G16740.199.206499.2064brassica_junceacds.BjuB06g21360S99.206499.2064
AT1G16740arabidopsis_thalianaAT1G16740.198.412797.619brassica_junceacds.BjuB03g53330S98.412797.619
AT1G16740arabidopsis_thalianaAT1G16740.198.412797.619brassica_junceacds.BjuA06g31250S70.454569.8864
AT1G16740arabidopsis_thalianaAT1G16740.198.412797.619brassica_junceacds.BjuA08g26040S98.412797.619
AT1G16740arabidopsis_thalianaAT1G16740.174.603267.4603oryza_brachyanthaOB01G38860.187.850579.4393
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524glycine_maxKRH7341692.56284.2975
AT1G16740arabidopsis_thalianaAT1G16740.144.444431.746cyanidioschyzon_merolaeCMV151CT48.275934.4828
AT1G16740arabidopsis_thalianaAT1G16740.190.476280.9524corymbia_citriodoracds-KAF8039644.191.281.6
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587aegilops_tauschiiAET4Gv20320800.191.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.161.904857.1429aegilops_tauschiiAET1Gv20840700.180.412474.2268
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746aegilops_tauschiiAET1Gv20831000.193.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746triticum_urartuTuG1812U0000272000.01.T0193.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587triticum_urartuTuG1812G0300003240.01.T0191.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746triticum_urartuTuG1812G0100003908.01.T0193.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524oryza_longistaminataKN539349.1_FGP01191.803383.6066
AT1G16740arabidopsis_thalianaAT1G16740.191.269882.5397fraxinus_excelsiorFRAEX38873_v2_000068100.1.cds92.741983.871
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746fraxinus_excelsiorFRAEX38873_v2_000043480.1.cds91.935583.0645
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587avena_sativa_sangAVESA.00010b.r2.3CG0504170.3.CDS91.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587avena_sativa_sangAVESA.00010b.r2.3DG0550730.1.CDS91.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587avena_sativa_sangAVESA.00010b.r2.1DG0159510.1.CDS91.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524avena_sativa_sangAVESA.00010b.r2.1AG0009000.2.CDS91.803383.6066
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587avena_sativa_sangAVESA.00010b.r2.1AG0040740.1.CDS91.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587avena_sativa_sangAVESA.00010b.r2.3AG0449970.3.CDS91.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.187.301681.746musa_acuminataMa07_p04080.290.909185.124
AT1G16740arabidopsis_thalianaAT1G16740.184.920676.9841oryza_glaberrimaORGLA01G0245800.187.704979.5082
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746panicum_halliiPUZ6508491.803384.4262
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524echinochloa_crusgalliscaffold84.103.cds44.094540.1575
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.9524echinochloa_crusgalliscaffold182.51.cds74.496668.4564
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.9524echinochloa_crusgalliscaffold32.23.cds47.844843.9655
AT1G16740arabidopsis_thalianaAT1G16740.167.460363.4921echinochloa_crusgalliscaffold89.180.cds24.425322.9885
AT1G16740arabidopsis_thalianaAT1G16740.183.333369.8413echinochloa_crusgalliscaffold15.531.cds39.473733.0827
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.9524echinochloa_crusgalliscaffold80.65.cds39.784936.5591
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524actinidia_chinensisPSS2896890.322682.2581
AT1G16740arabidopsis_thalianaAT1G16740.194.444488.8889citrus_clementinaESR3843895.289.6
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.1587oryza_indicaBGIOSGA004405-PA90.983682.7869
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746oryza_indicaBGIOSGA017691-PA74.172268.2119
AT1G16740arabidopsis_thalianaAT1G16740.176.984162.6984selaginella_moellendorffiiEFJ1062481.512666.3866
AT1G16740arabidopsis_thalianaAT1G16740.176.984162.6984selaginella_moellendorffiiEFJ3536581.512666.3866
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.1587oryza_sativaOs01t0734100-0190.983682.7869
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746oryza_sativaOs05t0528200-0192.56285.124
AT1G16740arabidopsis_thalianaAT1G16740.153.968334.9206homo_sapiensENSP0000034108245.637629.5302
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587triticum_aestivumTraesCS3B02G314100.191.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.9524triticum_aestivumTraesCS3D02G280000.192.622983.6066
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746triticum_aestivumTraesCS1D02G351300.193.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746triticum_aestivumTraesCS1B02G362900.193.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.9524triticum_aestivumTraesCS3A02G280300.192.622983.6066
AT1G16740arabidopsis_thalianaAT1G16740.189.682581.746triticum_aestivumTraesCS1A02G348300.192.622984.4262
AT1G16740arabidopsis_thalianaAT1G16740.153.968347.619oryza_rufipogonORUFI01G33080.270.103161.8557
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746oryza_rufipogonORUFI05G24960.192.56285.124
AT1G16740arabidopsis_thalianaAT1G16740.189.682581.746secale_cerealeSECCE3Rv1G0188150.192.622984.4262
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746secale_cerealeSECCE1Rv1G0049610.193.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.193.650887.3016gossypium_raimondiiKJB4643694.488
AT1G16740arabidopsis_thalianaAT1G16740.191.269884.9206helianthus_annuusmRNA:HanXRQr2_Chr03g01320219285.6
AT1G16740arabidopsis_thalianaAT1G16740.191.269884.127helianthus_annuusmRNA:HanXRQr2_Chr17g07923419284.8
AT1G16740arabidopsis_thalianaAT1G16740.153.968347.619oryza_punctataOPUNC01G29810.188.311777.9221
AT1G16740arabidopsis_thalianaAT1G16740.188.888982.5397eragrostis_tefEt_9B_065096.CDS78.873273.2394
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.9524eragrostis_tefEt_9A_062523.CDS67.272761.8182
AT1G16740arabidopsis_thalianaAT1G16740.188.095279.3651eragrostis_tefEt_3A_024910.CDS91.735582.6446
AT1G16740arabidopsis_thalianaAT1G16740.188.095281.746eragrostis_tefEt_3B_029293.CDS55.778951.7588
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.1587medicago_truncatulaAET0000993.388483.4711
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.1587medicago_truncatulaKEH1728293.388483.4711
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.9524saccharum_spontaneumSspon.07G0035500-1D-mRNA-172.077966.2338
AT1G16740arabidopsis_thalianaAT1G16740.187.301680.9524saccharum_spontaneumSspon.03G0007070-4D-mRNA-1:cds49.773846.1538
AT1G16740arabidopsis_thalianaAT1G16740.188.888982.5397saccharum_spontaneumSspon.03G0007070-1A-mRNA-1:cds92.56285.9504
AT1G16740arabidopsis_thalianaAT1G16740.188.888982.5397sorghum_bicolorEES0142692.56285.9504
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746sorghum_bicolorEES1985191.803384.4262
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587triticum_dicoccoidesTRIDC3BG046850.191.803382.7869
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746triticum_dicoccoidesTRIDC1AG051290.193.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746triticum_dicoccoidesTRIDC1BG058530.193.442684.4262
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.9524triticum_dicoccoidesTRIDC3AG041530.192.622983.6066
AT1G16740arabidopsis_thalianaAT1G16740.192.063583.3333coffea_canephoraCDP1731192.884
AT1G16740arabidopsis_thalianaAT1G16740.193.650887.3016manihot_esculentaOAY5470494.488
AT1G16740arabidopsis_thalianaAT1G16740.190.476284.127kalanchoe_fedtschenkoiKaladp0009s0064.1.v1.192.682986.1789
AT1G16740arabidopsis_thalianaAT1G16740.188.888977.7778trifolium_pratenseTp57577_TGAC_v2_mRNA3094292.56280.9917
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.9524eucalyptus_grandisKCW8724990.481.6
AT1G16740arabidopsis_thalianaAT1G16740.186.507980.1587dioscorea_rotundataDRNTG_03416.190.082683.4711
AT1G16740arabidopsis_thalianaAT1G16740.190.476282.5397prunus_persicaONI3597991.283.2
AT1G16740arabidopsis_thalianaAT1G16740.190.476282.5397prunus_persicaONI1183491.283.2
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.1587chenopodium_quinoaAUR62000936-RA:cds90.243982.1138
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.9524digitaria_exilisDexi3B01G0018670.1:cds88.881.6
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524digitaria_exilisDexi9A01G0046980.1:cds45.161341.129
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524digitaria_exilisDexi3A01G0018250.1:cds89.681.6
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524digitaria_exilisDexi9B01G0046280.1:cds45.161341.129
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746oryza_barthiiOBART01G29980.192.56285.124
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524oryza_barthiiOBART01G29970.178.873271.831
AT1G16740arabidopsis_thalianaAT1G16740.198.412797.619brassica_oleraceaBo5g022140.198.412797.619
AT1G16740arabidopsis_thalianaAT1G16740.190.476282.5397prunus_dulcisVVA2695691.283.2
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524prunus_dulcisVVA2125489.681.6
AT1G16740arabidopsis_thalianaAT1G16740.151.587347.619corylus_avellanaCav07g13110.t180.246974.0741
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.9524leersia_perrieriLPERR05G19360.191.735584.2975
AT1G16740arabidopsis_thalianaAT1G16740.189.682580.9524nicotiana_attenuataOIT0615390.481.6
AT1G16740arabidopsis_thalianaAT1G16740.190.476283.3333olea_europaeaOE9A036270C191.935584.6774
AT1G16740arabidopsis_thalianaAT1G16740.192.063584.127pistacia_veracds-EVM0016978.192.884.8
AT1G16740arabidopsis_thalianaAT1G16740.153.968336.5079drosophila_melanogasterFBpp007563145.333330.6667
AT1G16740arabidopsis_thalianaAT1G16740.198.412797.619brassica_napusCDY4003698.412797.619
AT1G16740arabidopsis_thalianaAT1G16740.198.412797.619brassica_napusCDY3511598.412797.619
AT1G16740arabidopsis_thalianaAT1G16740.198.412797.619brassica_napusCDX9680898.412797.619
AT1G16740arabidopsis_thalianaAT1G16740.198.412796.8254brassica_napusCDX8394298.412796.8254
AT1G16740arabidopsis_thalianaAT1G16740.192.857188.0952corchorus_capsularisOMO8329192.857188.0952
AT1G16740arabidopsis_thalianaAT1G16740.188.095281.746oryza_meridionalisOMERI05G20980.169.811364.7799
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524oryza_meridionalisOMERI01G27430.191.803383.6066
AT1G16740arabidopsis_thalianaAT1G16740.1100100camelina_sativaCsa14g020830.1100100
AT1G16740arabidopsis_thalianaAT1G16740.1100100camelina_sativaCsa03g020470.1100100
AT1G16740arabidopsis_thalianaAT1G16740.1100100camelina_sativaCsa17g022320.1100100
AT1G16740arabidopsis_thalianaAT1G16740.155.555647.619malus_domestica_goldenmRNA:MD07G013860066.666757.1429
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.1587malus_domestica_goldenmRNA:MD10G018210089.680.8
AT1G16740arabidopsis_thalianaAT1G16740.188.095282.5397daucus_carotaKZN1120088.883.2
AT1G16740arabidopsis_thalianaAT1G16740.186.507977.7778rosa_chinensisPRQ3033187.903279.0323
AT1G16740arabidopsis_thalianaAT1G16740.190.476281.746juglans_regiacds.Jr07_10630_p191.282.4
AT1G16740arabidopsis_thalianaAT1G16740.186.507980.1587nymphaea_colorataNC11G0302460.1:cds91.596684.8739
AT1G16740arabidopsis_thalianaAT1G16740.188.888982.5397vigna_angularisKOM4019292.56285.9504
AT1G16740arabidopsis_thalianaAT1G16740.188.888981.746setaria_italicaKQL1464091.803384.4262
AT1G16740arabidopsis_thalianaAT1G16740.188.888980.9524setaria_italicaKQL0685256.281451.2563
AT1G16740arabidopsis_thalianaAT1G16740.180.158768.254physcomitrium_patensPp3c20_1830V3.289.380576.1062
AT1G16740arabidopsis_thalianaAT1G16740.187.301681.746vitis_viniferaVitvi03g04488_P00144.715441.8699
AT1G16740arabidopsis_thalianaAT1G16740.188.095280.9524cynara_cardunculusKVH9116190.983683.6066

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0006412involved_in translation1IEAArabidopsis_thaliana(3702)Process
GO:0009507located_in chloroplast1ISMArabidopsis_thaliana(3702)Component
GO:0016070acts_upstream_of_or_within RNA metabolic process1IEAArabidopsis_thaliana(3702)Process

Expression