RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AT1G03400	Gene ID	838751	Accession	-
Symbol	AT1G03400	Alias	-	Full Name	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Status	Confidence	Length	1593 bases	Strand	Minus strand
Position	1 : 842659 - 844251	RNA binding domain	2OG-FeII_Oxy
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
AT1G03400	2OG-FeII_Oxy	PF03171	7.3e-25	1
AT1G03400	2OG-FeII_Oxy	PF03171	2.5e-21	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AT1G03400-201	AT1G03400	1385	351aa	AT1G03400

Gene Model

Click here to download AT1G03400's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AT1G03400's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AT1G03400	arabidopsis_thaliana	AT1G04380.1	65.5072	49.2754	arabidopsis_thaliana	AT1G03400.2	59.6306	44.8549
AT1G03400	arabidopsis_thaliana	AT5G43440.1	66.3014	49.589	arabidopsis_thaliana	AT1G03400.2	63.8522	47.7573

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AT1G03400	arabidopsis_thaliana	AT1G03400.2	44.591	31.3984	papaver_somniferum	RZC68886	61.0108	42.9603
AT1G03400	arabidopsis_thaliana	AT1G03400.2	54.0897	39.5778	cannabis_sativa_female	cds.evm.model.07.48	58.0737	42.4929
AT1G03400	arabidopsis_thaliana	AT1G03400.2	26.1214	18.9974	ficus_carica	FCD_00021622-RA:cds	66.8919	48.6486
AT1G03400	arabidopsis_thaliana	AT1G03400.2	52.2427	38.2586	theobroma_cacao	EOY05996	64.0777	46.9256
AT1G03400	arabidopsis_thaliana	AT1G03400.2	55.1451	42.2164	theobroma_cacao	EOY05989	59.375	45.4545
AT1G03400	arabidopsis_thaliana	AT1G03400.2	59.1029	40.8971	cucumis_melo	MELO3C022978.2.1	59.5745	41.2234
AT1G03400	arabidopsis_thaliana	AT1G03400.2	59.3668	41.1609	cucumis_sativus	KGN61614	59.8404	41.4894
AT1G03400	arabidopsis_thaliana	AT1G03400.2	60.1583	44.0633	citrullus_lanatus	Cla97C06G116470.1	60.8	44.5333
AT1G03400	arabidopsis_thaliana	AT1G03400.2	56.2005	41.6887	amborella_trichopoda	ERN14044	59.0028	43.7673
AT1G03400	arabidopsis_thaliana	AT1G03400.2	40.6332	29.2876	amborella_trichopoda	ERN05151	60.6299	43.7008
AT1G03400	arabidopsis_thaliana	AT1G03400.2	55.6728	42.4802	prunus_avium	Pav_sc0000027.1_g430.1.br:mrna	65.3251	49.8452
AT1G03400	arabidopsis_thaliana	AT1G03400.2	53.562	42.2164	prunus_avium	Pav_sc0000027.1_g410.1.br:mrna	62.6543	49.3827
AT1G03400	arabidopsis_thaliana	AT1G03400.2	33.7731	25.8575	pisum_sativum	Psat3g148360.1.cds	67.0157	51.3089
AT1G03400	arabidopsis_thaliana	AT1G03400.2	59.6306	41.6887	pisum_sativum	Psat3g147600.1.cds	63.3053	44.2577
AT1G03400	arabidopsis_thaliana	AT1G03400.2	40.8971	25.066	quercus_suber	cds-POF20610.1	52.3649	32.0946
AT1G03400	arabidopsis_thaliana	AT1G03400.2	24.8021	16.3588	quercus_suber	cds-POE68780.1	71.7557	47.3282
AT1G03400	arabidopsis_thaliana	AT1G03400.2	36.1478	27.4406	quercus_suber	cds-POF00791.1	65.2381	49.5238
AT1G03400	arabidopsis_thaliana	AT1G03400.2	58.0475	42.2164	ananas_comosus	Aco006249.1.mrna1	39.5683	28.777
AT1G03400	arabidopsis_thaliana	AT1G03400.2	59.6306	43.0079	ananas_comosus	Aco010438.1.mrna1	38.8316	28.0069
AT1G03400	arabidopsis_thaliana	AT1G03400.2	75.4617	64.3799	eutrema_salsugineum	ESQ43432	67.6123	57.6832
AT1G03400	arabidopsis_thaliana	AT1G03400.2	80.2111	76.781	arabidopsis_halleri	g01970.t1	95.2978	91.2226
AT1G03400	arabidopsis_thaliana	AT1G03400.2	56.7282	41.4248	cajanus_cajan	C.cajan_40059.t	66.358	48.4568
AT1G03400	arabidopsis_thaliana	AT1G03400.2	22.1636	17.1504	solanum_tuberosum	PGSC0003DMT400089650	76.3636	59.0909
AT1G03400	arabidopsis_thaliana	AT1G03400.2	38.7863	28.496	ipomoea_triloba	itb04g08010.t1	36.8421	27.0677
AT1G03400	arabidopsis_thaliana	AT1G03400.2	27.4406	16.8865	ipomoea_triloba	itb13g18210.t1	61.5385	37.8698
AT1G03400	arabidopsis_thaliana	AT1G03400.2	56.2005	41.6887	sesamum_indicum	SIN_1021803.t	64.7416	48.0243
AT1G03400	arabidopsis_thaliana	AT1G03400.2	37.7309	27.4406	oryza_brachyantha	OB04G12420.1	65.5963	47.7064
AT1G03400	arabidopsis_thaliana	AT1G03400.2	36.9393	26.3852	oryza_brachyantha	OB04G12440.1	70.3518	50.2513
AT1G03400	arabidopsis_thaliana	AT1G03400.2	34.8285	23.219	glycine_max	KRH46705	63.7681	42.5121
AT1G03400	arabidopsis_thaliana	AT1G03400.2	53.0343	39.5778	glycine_max	KRH43756	63.4069	47.3186
AT1G03400	arabidopsis_thaliana	AT1G03400.2	50.6596	37.9947	glycine_max	KRH38583	65.3061	48.9796
AT1G03400	arabidopsis_thaliana	AT1G03400.2	43.5356	30.8707	corymbia_citriodora	cds-KAF7846619.1	62.9771	44.6565
AT1G03400	arabidopsis_thaliana	AT1G03400.2	51.9789	37.7309	corymbia_citriodora	cds-KAF8016435.1	59.697	43.3333
AT1G03400	arabidopsis_thaliana	AT1G03400.2	43.7995	31.1346	corymbia_citriodora	cds-KAF8040825.1	63.3588	45.0382
AT1G03400	arabidopsis_thaliana	AT1G03400.2	20.8443	13.1926	aegilops_tauschii	AET2Gv20047200.1	71.1712	45.045
AT1G03400	arabidopsis_thaliana	AT1G03400.2	38.2586	27.1768	oryza_longistaminata	KN539085.1_FGP010	69.378	49.2823
AT1G03400	arabidopsis_thaliana	AT1G03400.2	16.3588	12.4011	fraxinus_excelsior	FRAEX38873_v2_000350100.1.cds	68.1319	51.6483
AT1G03400	arabidopsis_thaliana	AT1G03400.2	27.4406	20.5805	avena_sativa_sang	AVESA.00010b.r2.2CG0324600.1.CDS	67.5325	50.6493
AT1G03400	arabidopsis_thaliana	AT1G03400.2	26.3852	19.2612	avena_sativa_sang	AVESA.00010b.r2.4CG1323900.1.CDS	64.9351	47.4026
AT1G03400	arabidopsis_thaliana	AT1G03400.2	27.7045	20.8443	avena_sativa_sang	AVESA.00010b.r2.2DG0357230.1.CDS	67.3077	50.641
AT1G03400	arabidopsis_thaliana	AT1G03400.2	33.2454	24.0106	hordeum_vulgare	HORVU.MOREX.r3.3HG0315100.1	70.3911	50.838
AT1G03400	arabidopsis_thaliana	AT1G03400.2	27.4406	20.8443	citrus_clementina	ESR33683	65.4088	49.6855
AT1G03400	arabidopsis_thaliana	AT1G03400.2	34.5646	26.6491	citrus_clementina	ESR33713	62.6794	48.3254
AT1G03400	arabidopsis_thaliana	AT1G03400.2	53.8259	36.1478	secale_cereale	SECCE6Rv1G0426250.1	63.5514	42.6791
AT1G03400	arabidopsis_thaliana	AT1G03400.2	55.1451	40.3694	gossypium_raimondii	KJB34540	62.0178	45.4006
AT1G03400	arabidopsis_thaliana	AT1G03400.2	62.2691	45.6464	gossypium_raimondii	KJB38330	64.4809	47.2678
AT1G03400	arabidopsis_thaliana	AT1G03400.2	57.2559	40.6332	medicago_truncatula	KEH22661	42.9703	30.4951
AT1G03400	arabidopsis_thaliana	AT1G03400.2	25.066	15.8311	medicago_truncatula	AES80748	71.4286	45.1128
AT1G03400	arabidopsis_thaliana	AT1G03400.2	36.4116	25.3298	triticum_dicoccoides	TRIDC2AG002710.1	67.3171	46.8293
AT1G03400	arabidopsis_thaliana	AT1G03400.2	35.6201	25.3298	triticum_dicoccoides	TRIDC2AG002730.1	68.8775	48.9796
AT1G03400	arabidopsis_thaliana	AT1G03400.2	38.7863	28.2322	coffea_canephora	CDO99211	58.5657	42.6295
AT1G03400	arabidopsis_thaliana	AT1G03400.2	38.7863	28.2322	coffea_canephora	CDO99212	62.0253	45.1477
AT1G03400	arabidopsis_thaliana	AT1G03400.2	35.0924	26.3852	coffea_canephora	CDO99210	66.8342	50.2513
AT1G03400	arabidopsis_thaliana	AT1G03400.2	37.2032	28.7599	coffea_canephora	CDO99205	64.6789	50
AT1G03400	arabidopsis_thaliana	AT1G03400.2	16.095	12.9288	trifolium_pratense	Tp57577_TGAC_v2_mRNA33227	78.2051	62.8205
AT1G03400	arabidopsis_thaliana	AT1G03400.2	74.4063	62.0053	brassica_rapa_ro18	A10p002160.1_BraROA.1	78.5515	65.4596
AT1G03400	arabidopsis_thaliana	AT1G03400.2	57.7836	43.2718	eucalyptus_grandis	KCW88506	58.7131	43.9678
AT1G03400	arabidopsis_thaliana	AT1G03400.2	58.8391	43.7995	eucalyptus_grandis	KCW60401	63.1728	47.0255
AT1G03400	arabidopsis_thaliana	AT1G03400.2	57.5198	44.3272	eucalyptus_grandis	KCW60387	63.3721	48.8372
AT1G03400	arabidopsis_thaliana	AT1G03400.2	54.0897	40.1055	eucalyptus_grandis	KCW60407	61.747	45.7831
AT1G03400	arabidopsis_thaliana	AT1G03400.2	51.4512	39.5778	eucalyptus_grandis	KCW60386	67.7083	52.0833
AT1G03400	arabidopsis_thaliana	AT1G03400.2	25.3298	17.942	dioscorea_rotundata	DRNTG_29340.1	54.8571	38.8571
AT1G03400	arabidopsis_thaliana	AT1G03400.2	53.0343	42.2164	prunus_persica	ONI26634	61.8462	49.2308
AT1G03400	arabidopsis_thaliana	AT1G03400.2	54.8813	41.9525	prunus_persica	ONI26636	64.5963	49.3789
AT1G03400	arabidopsis_thaliana	AT1G03400.2	52.7704	41.6887	prunus_persica	ONI26635	61.7284	48.7654
AT1G03400	arabidopsis_thaliana	AT1G03400.2	43.5356	30.343	avena_sativa_ot3098	cds.AVESA.00001b.r3.2Dg0002294.1	62.5	43.5606
AT1G03400	arabidopsis_thaliana	AT1G03400.2	47.4934	32.7177	chenopodium_quinoa	AUR62030585-RA:cds	60	41.3333
AT1G03400	arabidopsis_thaliana	AT1G03400.2	29.5515	21.1082	digitaria_exilis	Dexi7A01G0001710.1:cds	77.2414	55.1724
AT1G03400	arabidopsis_thaliana	AT1G03400.2	31.9261	27.1768	brassica_oleracea	Bo5g003830.1	81.2081	69.1275
AT1G03400	arabidopsis_thaliana	AT1G03400.2	54.6174	41.9525	prunus_dulcis	VVA16051	64.2857	49.3789
AT1G03400	arabidopsis_thaliana	AT1G03400.2	53.0343	41.9525	prunus_dulcis	VVA41716	62.037	49.0741
AT1G03400	arabidopsis_thaliana	AT1G03400.2	52.5066	41.1609	prunus_dulcis	VVA16050	61.4198	48.1481
AT1G03400	arabidopsis_thaliana	AT1G03400.2	34.0369	23.4828	olea_europaea	OE9A069320C1	54.661	37.7119
AT1G03400	arabidopsis_thaliana	AT1G03400.2	19.2612	13.4565	olea_europaea	OE9A041451C1	68.2243	47.6636
AT1G03400	arabidopsis_thaliana	AT1G03400.2	71.2401	61.2137	brassica_napus	CDX89892	76.9231	66.0969
AT1G03400	arabidopsis_thaliana	AT1G03400.2	31.9261	27.1768	brassica_napus	CDY18171	81.2081	69.1275
AT1G03400	arabidopsis_thaliana	AT1G03400.2	36.1478	33.5092	camelina_sativa	Csa03g004500.1	91.9463	85.2349
AT1G03400	arabidopsis_thaliana	AT1G03400.2	53.0343	41.1609	malus_domestica_golden	mRNA:MD16G0187000	63.6076	49.3671
AT1G03400	arabidopsis_thaliana	AT1G03400.2	45.3826	32.19	malus_domestica_golden	mRNA:MD16G0229500	55.8442	39.6104
AT1G03400	arabidopsis_thaliana	AT1G03400.2	16.6227	13.1926	daucus_carota	KZM96634	74.1176	58.8235
AT1G03400	arabidopsis_thaliana	AT1G03400.2	19.5251	12.9288	vitis_vinifera	Vitvi05g04226_P001	59.6774	39.5161
AT1G03400	arabidopsis_thaliana	AT1G03400.2	35.0924	26.1214	cynara_cardunculus	KVE74425	65.8416	49.0099
AT1G03400	arabidopsis_thaliana	AT1G03400.2	37.2032	25.5937	cynara_cardunculus	KVH96371	63.5135	43.6937

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005737	located_in cytoplasm	1	ISM	Arabidopsis_thaliana(3702)	Component
GO:0009416	acts_upstream_of_or_within response to light stimulus	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0009815	enables 1-aminocyclopropane-1-carboxylate oxidase activity	1	ISS	Arabidopsis_thaliana(3702)	Function
GO:0031347	acts_upstream_of_or_within regulation of defense response	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0033993	acts_upstream_of_or_within response to lipid	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0042742	acts_upstream_of_or_within defense response to bacterium	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0050832	acts_upstream_of_or_within defense response to fungus	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0071446	acts_upstream_of_or_within cellular response to salicylic acid stimulus	1	IEA	Arabidopsis_thaliana(3702)	Process

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression