Description

Ensembl ID AT1G01210 Gene ID 839481 Accession -
Symbol AT1G01210 Alias - Full Name DNA-directed RNA polymerase, subunit M, archaeal
Status Confidence Length 1881 bases Strand Plus strand
Position 1 : 88622 - 90502 RNA binding domain RNA_POL_M_15KD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT1G01210 RNA_POL_M_15KD PF02150 6.3e-08 1
AT1G01210 RNA_POL_M_15KD PF02150 6.3e-08 2
AT1G01210 RNA_POL_M_15KD PF02150 6.3e-08 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AT1G01210-201 AT1G01210 669 106aa AT1G01210

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G01210arabidopsis_thalianaAT4G16265.230.827118.0451arabidopsis_thalianaAT1G01210.338.679222.6415
AT1G01210arabidopsis_thalianaAT3G16980.140.350924.5614arabidopsis_thalianaAT1G01210.343.396226.4151
AT1G01210arabidopsis_thalianaAT3G25940.136.134521.8487arabidopsis_thalianaAT1G01210.340.56624.5283
AT1G01210arabidopsis_thalianaAT4G07950.198.113295.283arabidopsis_thalianaAT1G01210.398.113295.283

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT1G01210arabidopsis_thalianaAT1G01210.347.169831.1321chlamydomonas_reinhardtiiPNW8694645.871630.2752
AT1G01210arabidopsis_thalianaAT1G01210.35038.6792marchantia_polymorphaPTQ3227648.181837.2727
AT1G01210arabidopsis_thalianaAT1G01210.366.037750.9434papaver_somniferumRZC7356163.636449.0909
AT1G01210arabidopsis_thalianaAT1G01210.366.037750.9434papaver_somniferumRZC7356363.636449.0909
AT1G01210arabidopsis_thalianaAT1G01210.366.037750.9434papaver_somniferumRZC7355863.636449.0909
AT1G01210arabidopsis_thalianaAT1G01210.374.528356.6038cannabis_sativa_femalecds.evm.model.02.173271.818254.5455
AT1G01210arabidopsis_thalianaAT1G01210.373.584956.6038ficus_caricaFCD_00022016-RA:cds70.909154.5455
AT1G01210arabidopsis_thalianaAT1G01210.374.528358.4906theobroma_cacaoEOX9564770.535755.3571
AT1G01210arabidopsis_thalianaAT1G01210.352.830238.6792beta_vulgarisKMT1040960.215144.086
AT1G01210arabidopsis_thalianaAT1G01210.377.358556.6038cucumis_meloMELO3C026899.2.173.873954.0541
AT1G01210arabidopsis_thalianaAT1G01210.377.358556.6038cucumis_sativusKGN5977073.873954.0541
AT1G01210arabidopsis_thalianaAT1G01210.371.698157.5472populus_trichocarpaPotri.012G015900.1.v4.167.857154.4643
AT1G01210arabidopsis_thalianaAT1G01210.368.867946.2264solanum_lycopersicumSolyc05g055890.3.165.765844.1441
AT1G01210arabidopsis_thalianaAT1G01210.338.679229.2453caenorhabditis_elegansY77E11A.6a.137.96328.7037
AT1G01210arabidopsis_thalianaAT1G01210.372.641553.7736lactuca_sativacds-PLY77486.17051.8182
AT1G01210arabidopsis_thalianaAT1G01210.35036.7925ostreococcus_lucimarinusABO9530344.166732.5
AT1G01210arabidopsis_thalianaAT1G01210.361.320851.8868eragrostis_curvulaTVU2796860.185250.9259
AT1G01210arabidopsis_thalianaAT1G01210.378.301957.5472citrullus_lanatusCla97C10G196060.174.774854.955
AT1G01210arabidopsis_thalianaAT1G01210.361.320847.1698amborella_trichopodaERN1924559.090945.4545
AT1G01210arabidopsis_thalianaAT1G01210.375.471759.434vigna_unguiculataVigun05g120700.1.v1.272.072156.7568
AT1G01210arabidopsis_thalianaAT1G01210.373.584953.7736prunus_aviumPav_sc0000586.1_g580.1.mk:mrna70.270351.3514
AT1G01210arabidopsis_thalianaAT1G01210.372.641559.434phaseolus_vulgarisESW1229969.369456.7568
AT1G01210arabidopsis_thalianaAT1G01210.364.150944.3396asparagus_officinalisONK7950549.275434.058
AT1G01210arabidopsis_thalianaAT1G01210.373.584955.6604pisum_sativumPsat3g005240.1.cds70.270353.1532
AT1G01210arabidopsis_thalianaAT1G01210.366.037750quercus_subercds-POE88494.168.627451.9608
AT1G01210arabidopsis_thalianaAT1G01210.398.113295.283arabidopsis_lyratafgenesh1_pm.C_scaffold_100009398.113295.283
AT1G01210arabidopsis_thalianaAT1G01210.368.867948.1132capsicum_annuumPHT8252065.765845.9459
AT1G01210arabidopsis_thalianaAT1G01210.391.509486.7924eutrema_salsugineumESQ3675294.174889.3204
AT1G01210arabidopsis_thalianaAT1G01210.398.113297.1698arabidopsis_hallerig01807.t198.113297.1698
AT1G01210arabidopsis_thalianaAT1G01210.366.981152.8302cajanus_cajanC.cajan_43660.t66.981152.8302
AT1G01210arabidopsis_thalianaAT1G01210.368.867946.2264solanum_tuberosumPGSC0003DMT40006032865.765844.1441
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434setaria_viridisTKW4085662.727349.0909
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434oryza_nivaraONIVA02G30360.165.094350.9434
AT1G01210arabidopsis_thalianaAT1G01210.369.811348.1132ipomoea_trilobaitb02g04560.t167.889946.789
AT1G01210arabidopsis_thalianaAT1G01210.368.867950.9434oryza_glumipatulaOGLUM02G28050.155.30340.9091
AT1G01210arabidopsis_thalianaAT1G01210.362.264250zea_maysZm00001eb187060_P0016048.1818
AT1G01210arabidopsis_thalianaAT1G01210.363.207550sesamum_indicumSIN_1008681.t60.909148.1818
AT1G01210arabidopsis_thalianaAT1G01210.347.169830.1887chara_brauniiGBG8085332.467520.7792
AT1G01210arabidopsis_thalianaAT1G01210.352.830233.9623chara_brauniiGBG8967041.79126.8657
AT1G01210arabidopsis_thalianaAT1G01210.388.679281.1321arabis_alpinaKFK4250791.262183.4951
AT1G01210arabidopsis_thalianaAT1G01210.343.396233.0189ciona_savignyiENSCSAVP0000001407342.592632.4074
AT1G01210arabidopsis_thalianaAT1G01210.388.679283.0189brassica_junceacds.BjuA09g26030S91.262185.4369
AT1G01210arabidopsis_thalianaAT1G01210.387.735880.1887brassica_junceacds.BjuB02g00660S90.291382.5243
AT1G01210arabidopsis_thalianaAT1G01210.387.735882.0755brassica_junceacds.BjuA03g48480S90.291384.466
AT1G01210arabidopsis_thalianaAT1G01210.367.924551.8868oryza_brachyanthaOB02G34910.165.454550
AT1G01210arabidopsis_thalianaAT1G01210.374.528362.2642glycine_maxKRH4908771.171259.4595
AT1G01210arabidopsis_thalianaAT1G01210.374.528360.3774glycine_maxKRG9991471.171257.6577
AT1G01210arabidopsis_thalianaAT1G01210.371.698152.8302corymbia_citriodoracds-KAF8029789.167.857150
AT1G01210arabidopsis_thalianaAT1G01210.371.698152.8302corymbia_citriodoracds-KAF7847772.167.857150
AT1G01210arabidopsis_thalianaAT1G01210.368.867950.9434fraxinus_excelsiorFRAEX38873_v2_000339940.1.cds65.765848.6486
AT1G01210arabidopsis_thalianaAT1G01210.368.867950.9434fraxinus_excelsiorFRAEX38873_v2_000321800.1.cds65.765848.6486
AT1G01210arabidopsis_thalianaAT1G01210.362.264249.0566musa_acuminataMa06_p00100.164.077750.4854
AT1G01210arabidopsis_thalianaAT1G01210.365.094350musa_acuminataMa04_p36980.162.727348.1818
AT1G01210arabidopsis_thalianaAT1G01210.367.924550.9434oryza_glaberrimaORGLA02G0237100.165.454549.0909
AT1G01210arabidopsis_thalianaAT1G01210.365.094349.0566panicum_halliiPUZ7701662.727347.2727
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434echinochloa_crusgalliscaffold2.831.cds62.727349.0909
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434echinochloa_crusgalliscaffold108.121.cds62.727349.0909
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434echinochloa_crusgalliscaffold46.224.cds62.727349.0909
AT1G01210arabidopsis_thalianaAT1G01210.371.698158.4906actinidia_chinensisPSS2351868.468555.8559
AT1G01210arabidopsis_thalianaAT1G01210.363.207548.1132citrus_clementinaESR5803560.909146.3636
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434oryza_indicaBGIOSGA008792-PA65.094350.9434
AT1G01210arabidopsis_thalianaAT1G01210.344.339632.0755selaginella_moellendorffiiEFJ3216343.925231.7757
AT1G01210arabidopsis_thalianaAT1G01210.344.339632.0755selaginella_moellendorffiiEFJ1682343.925231.7757
AT1G01210arabidopsis_thalianaAT1G01210.342.452833.0189selaginella_moellendorffiiEFJ0535842.056132.7103
AT1G01210arabidopsis_thalianaAT1G01210.367.924550.9434oryza_sativaOs02t0672700-0165.454549.0909
AT1G01210arabidopsis_thalianaAT1G01210.341.509428.3019homo_sapiensENSP0000029386040.740727.7778
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434oryza_rufipogonORUFI02G28970.129.113922.7848
AT1G01210arabidopsis_thalianaAT1G01210.376.415158.4906gossypium_raimondiiKJB5305273.636456.3636
AT1G01210arabidopsis_thalianaAT1G01210.376.415159.434gossypium_raimondiiKJB2454673.636457.2727
AT1G01210arabidopsis_thalianaAT1G01210.372.641553.7736helianthus_annuusmRNA:HanXRQr2_Chr17g08218317051.8182
AT1G01210arabidopsis_thalianaAT1G01210.372.641553.7736helianthus_annuusmRNA:HanXRQr2_Chr05g01944617051.8182
AT1G01210arabidopsis_thalianaAT1G01210.365.094351.8868oryza_punctataOPUNC02G25210.165.094351.8868
AT1G01210arabidopsis_thalianaAT1G01210.362.264250.9434eragrostis_tefEt_1B_013190.CDS41.509433.9623
AT1G01210arabidopsis_thalianaAT1G01210.360.377450eragrostis_tefEt_1A_008358.CDS59.259349.0741
AT1G01210arabidopsis_thalianaAT1G01210.366.037744.3396medicago_truncatulaKEH2770754.687536.7188
AT1G01210arabidopsis_thalianaAT1G01210.369.811345.283medicago_truncatulaAES8273463.247941.0256
AT1G01210arabidopsis_thalianaAT1G01210.354.71744.3396saccharum_spontaneumSspon.04G0023690-1B-mRNA-1:cds60.416748.9583
AT1G01210arabidopsis_thalianaAT1G01210.363.207550saccharum_spontaneumSspon.04G0006570-1A-mRNA-1:cds60.909148.1818
AT1G01210arabidopsis_thalianaAT1G01210.363.207550.9434sorghum_bicolorKXG3102260.909149.0909
AT1G01210arabidopsis_thalianaAT1G01210.369.811355.6604coffea_canephoraCDP1166367.272753.6364
AT1G01210arabidopsis_thalianaAT1G01210.369.811354.717coffea_canephoraCDP1765567.272752.7273
AT1G01210arabidopsis_thalianaAT1G01210.371.698158.4906manihot_esculentaOAY6212667.857155.3571
AT1G01210arabidopsis_thalianaAT1G01210.366.037745.283kalanchoe_fedtschenkoiKaladp0055s0519.1.v1.165.420644.8598
AT1G01210arabidopsis_thalianaAT1G01210.367.924549.0566kalanchoe_fedtschenkoiKaladp0049s0040.1.v1.167.289748.5981
AT1G01210arabidopsis_thalianaAT1G01210.369.811352.8302trifolium_pratenseTp57577_TGAC_v2_mRNA497269.158952.3364
AT1G01210arabidopsis_thalianaAT1G01210.388.679283.9623brassica_rapa_ro18A09p050500.1_BraROA.191.262186.4078
AT1G01210arabidopsis_thalianaAT1G01210.371.698154.717eucalyptus_grandisKCW7471767.857151.7857
AT1G01210arabidopsis_thalianaAT1G01210.371.698154.717eucalyptus_grandisKCW4470967.857151.7857
AT1G01210arabidopsis_thalianaAT1G01210.371.698154.717eucalyptus_grandisKCW7471467.857151.7857
AT1G01210arabidopsis_thalianaAT1G01210.371.698154.717eucalyptus_grandisKCW7471667.857151.7857
AT1G01210arabidopsis_thalianaAT1G01210.368.867953.7736dioscorea_rotundataDRNTG_31314.166.363651.8182
AT1G01210arabidopsis_thalianaAT1G01210.373.584953.7736prunus_persicaONI2352370.270351.3514
AT1G01210arabidopsis_thalianaAT1G01210.366.981151.8868digitaria_exilisDexi1B01G0022050.1:cds64.545550
AT1G01210arabidopsis_thalianaAT1G01210.366.981151.8868digitaria_exilisDexi1A01G0023080.1:cds64.545550
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434oryza_barthiiOBART02G27520.165.094350.9434
AT1G01210arabidopsis_thalianaAT1G01210.389.622683.9623brassica_oleraceaBo3g017400.192.23386.4078
AT1G01210arabidopsis_thalianaAT1G01210.373.584953.7736prunus_dulcisVVA2551270.270351.3514
AT1G01210arabidopsis_thalianaAT1G01210.345.28335.8491galdieria_sulphurariaEME2815644.859835.514
AT1G01210arabidopsis_thalianaAT1G01210.369.811349.0566nicotiana_attenuataOIT0334766.666746.8468
AT1G01210arabidopsis_thalianaAT1G01210.368.867950olea_europaeaOE9A014069C165.765847.7477
AT1G01210arabidopsis_thalianaAT1G01210.368.867950olea_europaeaOE9A041135C265.765847.7477
AT1G01210arabidopsis_thalianaAT1G01210.342.452828.3019saccharomyces_cerevisiaeYDR045C40.909127.2727
AT1G01210arabidopsis_thalianaAT1G01210.365.094348.1132pistacia_veracds-EVM0016449.162.727346.3636
AT1G01210arabidopsis_thalianaAT1G01210.343.396233.0189drosophila_melanogasterFBpp008556342.592632.4074
AT1G01210arabidopsis_thalianaAT1G01210.388.679283.0189brassica_napusCDY6799555.952452.381
AT1G01210arabidopsis_thalianaAT1G01210.389.622683.9623brassica_napusCDY6737392.23386.4078
AT1G01210arabidopsis_thalianaAT1G01210.388.679283.0189brassica_napusCDY6037191.262185.4369
AT1G01210arabidopsis_thalianaAT1G01210.388.679283.0189brassica_napusCDY3799652.222248.8889
AT1G01210arabidopsis_thalianaAT1G01210.388.679283.0189brassica_napusCDX8875691.262185.4369
AT1G01210arabidopsis_thalianaAT1G01210.377.358559.434corchorus_capsularisOMO6425274.545557.2727
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434oryza_meridionalisOMERI02G26800.165.094350.9434
AT1G01210arabidopsis_thalianaAT1G01210.398.113294.3396camelina_sativaCsa14g001950.198.113294.3396
AT1G01210arabidopsis_thalianaAT1G01210.399.056695.283camelina_sativaCsa03g002020.199.056695.283
AT1G01210arabidopsis_thalianaAT1G01210.397.169893.3962camelina_sativaCsa17g001680.197.169893.3962
AT1G01210arabidopsis_thalianaAT1G01210.375.471757.5472malus_domestica_goldenmRNA:MD01G006580072.072154.955
AT1G01210arabidopsis_thalianaAT1G01210.369.811350rosa_chinensisPRQ5854466.666747.7477
AT1G01210arabidopsis_thalianaAT1G01210.375.471759.434juglans_regiacds.Jr12_05530_p172.072156.7568
AT1G01210arabidopsis_thalianaAT1G01210.361.320845.283nymphaea_colorataNC10G0162210.1:cds58.558643.2432
AT1G01210arabidopsis_thalianaAT1G01210.365.094350.9434setaria_italicaKQL3090462.727349.0909
AT1G01210arabidopsis_thalianaAT1G01210.344.339633.9623physcomitrium_patensPp3c15_5550V3.442.727332.7273
AT1G01210arabidopsis_thalianaAT1G01210.370.754757.5472vitis_viniferaVitvi15g00930_P00367.567654.955
AT1G01210arabidopsis_thalianaAT1G01210.370.754754.717cynara_cardunculusKVH9730268.181852.7273

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003676enables nucleic acid binding1IEAArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0006355involved_in regulation of DNA-templated transcription1IEAArabidopsis_thaliana(3702)Process
GO:0008270enables zinc ion binding1IEAArabidopsis_thaliana(3702)Function
GO:0042780involved_in tRNA 3-end processing1IEAArabidopsis_thaliana(3702)Process

Expression