| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | AMTR_s00390p00012910 | Gene ID |
|
Accession |
- |
| Symbol |
|
Alias |
- |
Full Name |
DNA-directed RNA polymerase family protein |
| Status |
Confidence |
Length |
5926 bases |
Strand |
Minus strand |
| Position |
AmTr_v1.0_scaffold00390 : 14979 - 20904 |
RNA binding domain |
RNA_pol_Rpb1_4 , RNA_pol_Rpb1_5 , Ribosomal_S2 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ERN02618 |
RNA_pol_Rpb1_4 |
PF05000 |
1.6e-10 |
1 |
| ERN02618 |
RNA_pol_Rpb1_5 |
PF04998 |
2.3e-49 |
2 |
| ERN02618 |
RNA_pol_Rpb1_5 |
PF04998 |
2.3e-49 |
3 |
| ERN02618 |
Ribosomal_S2 |
PF00318 |
1e-75 |
4 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
ERN02618 |
5202 |
1733aa |
ERN02618 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN10595 | 88.9655 | 81.3793 | amborella_trichopoda | ERN02618 | 7.44374 | 6.809 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02619 | 21.9697 | 14.3939 | amborella_trichopoda | ERN02618 | 3.3468 | 2.19273 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN19398 | 23.9234 | 12.201 | amborella_trichopoda | ERN02618 | 5.77034 | 2.94287 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN19396 | 9.83437 | 3.93375 | amborella_trichopoda | ERN02618 | 5.48182 | 2.19273 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERM96260 | 16.1605 | 7.64642 | amborella_trichopoda | ERN02618 | 17.1956 | 8.13618 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERM95665 | 17.2813 | 8.31526 | amborella_trichopoda | ERN02618 | 13.7911 | 6.63589 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERM99420 | 12.9958 | 4.90605 | amborella_trichopoda | ERN02618 | 14.3681 | 5.42412 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN11762 | 15.5625 | 7.3125 | amborella_trichopoda | ERN02618 | 14.3681 | 6.7513 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 35.9492 | 22.1581 | chondrus_crispus | CCP38174 | 50.4862 | 31.1183 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 7.84766 | 7.03982 | papaver_somniferum | RZC62333 | 82.9268 | 74.3902 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 24.8125 | 23.6584 | papaver_somniferum | RZC75665 | 91.8803 | 87.6068 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 10.4443 | 10.3866 | papaver_somniferum | RZC81611 | 81.9005 | 81.448 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 19.2152 | 18.4074 | papaver_somniferum | RZC45340 | 93.2773 | 89.3557 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 66.936 | 61.6849 | arabidopsis_thaliana | ATCG00170.1 | 84.3023 | 77.689 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 15.0029 | 14.4836 | populus_trichocarpa | Potri.019G028101.1.v4.1 | 94.5455 | 91.2727 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 13.041 | 12.4639 | populus_trichocarpa | Potri.003G067266.1.v4.1 | 95.3587 | 91.1392 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 68.2631 | 63.0121 | populus_trichocarpa | Potri.013G140260.1.v4.1 | 84.8637 | 78.3357 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 37.2764 | 33.5257 | brassica_juncea | cds.BjuUnng02600S | 68 | 61.1579 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 13.2141 | 12.8679 | brassica_juncea | cds.BjuB05g58810S | 95.4167 | 92.9167 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 13.2141 | 12.8679 | brassica_juncea | cds.BjuUnng02800S | 95.4167 | 92.9167 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 67.1091 | 61.8581 | brassica_napus | CDY21185 | 84.3977 | 77.7939 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 67.1091 | 61.8581 | brassica_napus | CDY21191 | 84.3977 | 77.7939 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 6.8667 | 6.8667 | cajanus_cajan | C.cajan_44260.t | 94.4444 | 94.4444 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 68.4362 | 63.9931 | cajanus_cajan | C.cajan_28982.t | 84.4128 | 78.9324 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 28.2747 | 26.255 | cajanus_cajan | C.cajan_30660.t | 87.9713 | 81.6876 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 36.1223 | 35.0837 | prunus_dulcis | VVA36831 | 86.8239 | 84.3273 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 65.2626 | 59.146 | medicago_truncatula | AES88229 | 82.6754 | 74.9269 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 13.4449 | 12.9833 | medicago_truncatula | KEH18367 | 93.5743 | 90.3614 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 29.8327 | 27.9284 | pisum_sativum | Psat4g147920.1.cds | 74.6032 | 69.8413 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 10.2712 | 9.98269 | pisum_sativum | Psat5g134600.1.cds | 82.0276 | 79.7235 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 13.1564 | 12.4062 | pisum_sativum | Psat0s5655g0040.1.cds1 | 77.2881 | 72.8814 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 17.8304 | 16.8494 | vigna_angularis | KOM57431 | 90.3509 | 85.3801 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 33.6411 | 30.6405 | vigna_unguiculata | VigunL070201.1.v1.2.CDS.1 | 81.311 | 74.0586 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 64.2239 | 57.5303 | vigna_unguiculata | VigunL028600.1.v1.2.CDS.1 | 81.1816 | 72.7206 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 64.6278 | 57.7611 | vigna_unguiculata | VigunL035300.1.v1.2 | 80.4598 | 71.9109 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 33.8142 | 30.8136 | vigna_unguiculata | Vigun10g102500.1.v1.2.CDS.1 | 80.3841 | 73.251 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 19.7346 | 18.5228 | vigna_unguiculata | VigunL043366.1.v1.2.CDS.1 | 87.0229 | 81.6794 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 9.92499 | 9.69417 | vigna_unguiculata | Vigun04g099580.1.v1.2.CDS.1 | 96.0894 | 93.8548 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 9.57876 | 9.05943 | manihot_esculenta | OAY54569 | 87.8307 | 83.0688 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 10.1558 | 9.17484 | solanum_lycopersicum | Solyc08g028950.2.1 | 52.5373 | 47.4627 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 6.34737 | 5.65493 | solanum_lycopersicum | Solyc04g049730.1.1.1 | 79.1367 | 70.5036 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 4.67398 | 4.44316 | capsicum_annuum | PHT70741 | 94.186 | 89.5349 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 29.775 | 27.6399 | capsicum_annuum | PHT94099 | 88.3562 | 82.0205 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 68.1477 | 62.839 | capsicum_annuum | PHT85291 | 84.842 | 78.2328 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 10.9059 | 10.2712 | capsicum_annuum | PHT94552 | 92.1951 | 86.8293 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 12.0023 | 11.5984 | capsicum_annuum | PHT94640 | 93.6937 | 90.5405 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 20.1385 | 17.8881 | capsicum_annuum | PHT72802 | 76.3676 | 67.8337 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 10.0981 | 9.69417 | capsicum_annuum | PHT61499 | 90.6736 | 87.0466 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 8.36699 | 7.15522 | capsicum_annuum | PHT68263 | 51.4184 | 43.9716 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 3.57761 | 3.4045 | capsicum_annuum | PHT81463 | 88.5714 | 84.2857 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 29.8327 | 28.1016 | lactuca_sativa | cds-PLY79379.1 | 66.538 | 62.677 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 25.6203 | 24.6394 | solanum_tuberosum | PGSC0003DMT400052303 | 92.1162 | 88.5892 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 61.4541 | 53.7796 | sorghum_bicolor | EES02995 | 70.0658 | 61.3158 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 25.0433 | 22.8505 | triticum_turgidum | TRITD1Av1G209870.1 | 86.4542 | 78.8845 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 21.6965 | 19.7923 | triticum_turgidum | TRITD7Bv1G049370.1 | 89.5238 | 81.6667 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 60.3001 | 52.5678 | secale_cereale | SECCE6Rv1G0444280.1.CDS.1 | 71.8707 | 62.6547 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 60.3001 | 52.914 | secale_cereale | SECCEUnv1G0554490.1 | 65.9306 | 57.8549 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 19.7346 | 18.1766 | triticum_aestivum | TraesCS7B02G117800.1.cds1 | 92.4324 | 85.1351 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 25.5626 | 24.0046 | chenopodium_quinoa | AUR62024082-RA:cds | 91.1523 | 85.5967 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 48.9902 | 41.835 | ipomoea_triloba | itb13g11620.t1 | 45.6452 | 38.9785 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 17.4841 | 16.6763 | ipomoea_triloba | itb13g09630.t1 | 92.9448 | 88.6503 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 37.2764 | 23.543 | galdieria_sulphuraria | EME28514 | 20.6258 | 13.0268 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 42.1235 | 36.8725 | triticum_urartu | TuG1812S0003211100.01.T01.s_cds27447 | 68.2243 | 59.7196 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 32.3139 | 20.3116 | cyanidioschyzon_merolae | CMV217CT | 33.4129 | 21.0024 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 67.0514 | 61.8581 | arabidopsis_lyrata | scaffold_201046.1 | 84.264 | 77.7375 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 44.4316 | 38.4305 | oryza_barthii | OBART04G05110.1 | 68.6274 | 59.3583 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 8.77092 | 8.30929 | saccharum_spontaneum | Sspon.04G0029810-2C-mRNA-1:cds | 93.2515 | 88.3436 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 6.7513 | 6.23197 | triticum_dicoccoides | TRIDC1AG059090.1 | 87.9699 | 81.203 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 9.57876 | 9.11714 | olea_europaea | OE9A028225C1 | 93.7853 | 89.2655 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 57.8765 | 54.1258 | brassica_rapa_ro18 | A09g505880.1_BraROA.1 | 85.7265 | 80.1709 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 36.2954 | 33.5257 | brassica_rapa_ro18 | A08p003340.1_BraROA.1.cds1 | 84.543 | 78.0914 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 66.936 | 61.9735 | daucus_carota | KZM81212 | 83.4532 | 77.2662 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 4.84709 | 4.32776 | nymphaea_colorata | NC8G0125130.1:cds | 82.3529 | 73.5294 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 5.0779 | 4.73168 | aegilops_tauschii | AET0Gv20063500.1 | 96.7033 | 90.1099 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 11.2522 | 10.4443 | aegilops_tauschii | AET4Gv20044700.2 | 95.1219 | 88.2927 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 12.637 | 11.7715 | aegilops_tauschii | AET5Gv20017600.1 | 86.2205 | 80.315 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 43.1044 | 30.8713 | selaginella_moellendorffii | EFJ05014 | 49.8332 | 35.6905 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 43.1621 | 30.929 | selaginella_moellendorffii | ADH10429 | 49.8999 | 35.7572 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 18.4074 | 18.2343 | vitis_vinifera | Vitvi13g00108_P001 | 93.2749 | 92.3977 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 22.8505 | 18.6959 | eutrema_salsugineum | ESQ29735 | 59.6386 | 48.7952 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 4.21235 | 4.21235 | corchorus_capsularis | OMP10687 | 97.3333 | 97.3333 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 6.57819 | 6.34737 | citrullus_lanatus | Cla97C10G197640.1 | 78.0822 | 75.3425 |
| AMTR_s00390p00012910 | amborella_trichopoda | ERN02618 | 40.9694 | 36.8725 | oryza_nivara | ONIVA07G21520.1 | 86.3747 | 77.7372 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
