Description

Ensembl ID AMTR_s00146p00098380 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 891 bases Strand Minus strand
Position AmTr_v1.0_scaffold00146 : 1184809 - 1185699 RNA binding domain Isy1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN04871 Isy1 PF06246 3e-93 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN04871 891 296aa ERN04871

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00146p00098380amborella_trichopodaERN1601797.635196.6216amborella_trichopodaERN0487197.635196.6216

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00146p00098380amborella_trichopodaERN0487187.837880.0676papaver_somniferumRZC4902978.787971.8182
AMTR_s00146p00098380amborella_trichopodaERN0487184.459572.6351marchantia_polymorphaPTQ4320885.324273.3788
AMTR_s00146p00098380amborella_trichopodaERN0487189.52776.6892cannabis_sativa_femalecds.novel_model_4850_5bd9a17a88.039975.4153
AMTR_s00146p00098380amborella_trichopodaERN0487189.189280.4054beta_vulgarisKMT0457488.590679.8658
AMTR_s00146p00098380amborella_trichopodaERN0487188.513577.7027theobroma_cacaoEOX9240287.043276.412
AMTR_s00146p00098380amborella_trichopodaERN0487171.283857.7703chlamydomonas_reinhardtiiPNW7721676.449361.9565
AMTR_s00146p00098380amborella_trichopodaERN0487189.864978.3784cucumis_meloMELO3C023475.2.187.788876.5677
AMTR_s00146p00098380amborella_trichopodaERN0487188.175774.6622arabidopsis_thalianaAT3G18790.18773.6667
AMTR_s00146p00098380amborella_trichopodaERN0487189.864978.0405populus_trichocarpaPotri.017G060200.1.v4.187.788876.2376
AMTR_s00146p00098380amborella_trichopodaERN0487189.864978.0405cucumis_sativusKGN4521187.788876.2376
AMTR_s00146p00098380amborella_trichopodaERN0487187.162272.2973brassica_junceacds.BjuB01g12520S86.577271.8121
AMTR_s00146p00098380amborella_trichopodaERN0487187.162273.3108brassica_junceacds.BjuA05g26490S86.868773.064
AMTR_s00146p00098380amborella_trichopodaERN0487187.162273.6487brassica_junceacds.BjuB07g43210S86.868773.4007
AMTR_s00146p00098380amborella_trichopodaERN0487157.094645.9459brassica_junceacds.BjuA01g10000S75.784860.9865
AMTR_s00146p00098380amborella_trichopodaERN0487170.945960.1351brassica_napusCDX9227478.651766.6667
AMTR_s00146p00098380amborella_trichopodaERN0487171.959560.1351brassica_napusCDX9931479.775366.6667
AMTR_s00146p00098380amborella_trichopodaERN0487139.864932.7703brassica_napusCDY1854680.272165.9864
AMTR_s00146p00098380amborella_trichopodaERN0487189.864978.3784prunus_persicaONH9504488.372177.0764
AMTR_s00146p00098380amborella_trichopodaERN0487171.283863.5135prunus_persicaONI0445388.655578.9916
AMTR_s00146p00098380amborella_trichopodaERN0487179.054169.9324cajanus_cajanC.cajan_35778.t88.973478.7072
AMTR_s00146p00098380amborella_trichopodaERN0487178.716269.5946cajanus_cajanC.cajan_14659.t88.931378.626
AMTR_s00146p00098380amborella_trichopodaERN0487188.851378.0405malus_domestica_goldenCDS:MD12G0180700.187.375476.7442
AMTR_s00146p00098380amborella_trichopodaERN0487187.576.0135glycine_maxKRH1527386.622175.2508
AMTR_s00146p00098380amborella_trichopodaERN0487187.576.0135glycine_maxKRH3815186.622175.2508
AMTR_s00146p00098380amborella_trichopodaERN0487188.513577.3649glycine_maxKRH5515987.043276.0797
AMTR_s00146p00098380amborella_trichopodaERN0487139.52732.0946prunus_dulcisVVA1265788.636471.9697
AMTR_s00146p00098380amborella_trichopodaERN0487188.513575medicago_truncatulaAET0075086.468673.2673
AMTR_s00146p00098380amborella_trichopodaERN0487189.189278.7162lupinus_angustifoliusOIW0823286.557476.3934
AMTR_s00146p00098380amborella_trichopodaERN0487188.175776.6892lupinus_angustifoliusOIV9912986.423875.1656
AMTR_s00146p00098380amborella_trichopodaERN0487182.432467.9054physcomitrium_patensPp3c13_15060V3.183.561668.8356
AMTR_s00146p00098380amborella_trichopodaERN0487188.851379.0541phaseolus_vulgarisESW1386787.375477.7409
AMTR_s00146p00098380amborella_trichopodaERN0487182.770373.3108phaseolus_vulgarisESW1853686.267676.4084
AMTR_s00146p00098380amborella_trichopodaERN0487186.486574.3243pisum_sativumPsat2g008160.1.cds184.488472.6073
AMTR_s00146p00098380amborella_trichopodaERN048715040.2027vigna_angularisKOM4527463.793151.2931
AMTR_s00146p00098380amborella_trichopodaERN0487148.648640.5405vigna_angularisKOM4527382.758668.9655
AMTR_s00146p00098380amborella_trichopodaERN0487173.648764.527vigna_angularisKOM4527682.889772.6236
AMTR_s00146p00098380amborella_trichopodaERN0487157.770349.3243vigna_angularisKOM4700979.166767.5926
AMTR_s00146p00098380amborella_trichopodaERN0487188.851380.0676vigna_unguiculataVigun08g148400.1.v1.2.CDS.187.959979.2642
AMTR_s00146p00098380amborella_trichopodaERN0487189.52779.0541manihot_esculentaOAY5975287.748377.4834
AMTR_s00146p00098380amborella_trichopodaERN0487189.189278.7162solanum_lycopersicumSolyc05g051070.3.185.161375.1613
AMTR_s00146p00098380amborella_trichopodaERN0487151.689241.5541capsicum_annuumPHT6746363.7551.25
AMTR_s00146p00098380amborella_trichopodaERN0487189.864979.3919capsicum_annuumPHT8182788.963278.5953
AMTR_s00146p00098380amborella_trichopodaERN0487148.986545.9459vigna_radiataVradi06g05290.188.414682.9268
AMTR_s00146p00098380amborella_trichopodaERN0487172.297361.4865sesamum_indicumSIN_1025355.t85.672.8
AMTR_s00146p00098380amborella_trichopodaERN0487188.851379.3919lactuca_sativacds-PLY83467.187.375478.0731
AMTR_s00146p00098380amborella_trichopodaERN0487189.189279.3919helianthus_annuusCDS:HanXRQr2_Chr03g0135951.188.294378.5953
AMTR_s00146p00098380amborella_trichopodaERN0487182.432470.9459avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0001175.268.539358.9888
AMTR_s00146p00098380amborella_trichopodaERN0487182.432470.9459avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0001487.168.347358.8235
AMTR_s00146p00098380amborella_trichopodaERN0487178.716266.8919lolium_perennecds.KYUSt_chr6.1894677.408665.7807
AMTR_s00146p00098380amborella_trichopodaERN0487150.337842.9054oryza_longistaminataKN539183.1_FGP01373.39962.5616
AMTR_s00146p00098380amborella_trichopodaERN0487182.094670.9459avena_sativa_sangAVESA.00010b.r2.6CG1077810.1.CDS.178.13567.5241
AMTR_s00146p00098380amborella_trichopodaERN0487182.094670.9459avena_sativa_sangAVESA.00010b.r2.6DG1163550.1.CDS.178.13567.5241
AMTR_s00146p00098380amborella_trichopodaERN0487182.432470.9459avena_sativa_sangAVESA.00010b.r2.6AG1036790.1.CDS.178.456667.5241
AMTR_s00146p00098380amborella_trichopodaERN0487189.52779.0541solanum_tuberosumPGSC0003DMT40001797888.628878.2609
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946oryza_rufipogonORUFI02G24550.178.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487182.770369.5946oryza_brachyanthaOB02G30580.178.778166.2379
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946oryza_glaberrimaORGLA02G0199300.178.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946oryza_punctataOPUNC02G21090.178.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487182.432468.9189setaria_italicaKQL3036278.456665.5949
AMTR_s00146p00098380amborella_trichopodaERN0487182.432468.9189setaria_viridisTKW4013678.456665.5949
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946sorghum_bicolorEES0710978.964466.6667
AMTR_s00146p00098380amborella_trichopodaERN0487181.756869.9324triticum_turgidumTRITD6Bv1G127630.177.813566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487182.094669.9324triticum_turgidumTRITD6Av1G134040.178.13566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487170.608157.7703triticum_turgidumTRITD3Bv1G280910.173.851660.424
AMTR_s00146p00098380amborella_trichopodaERN0487169.256858.4459secale_cerealeSECCE6Rv1G0439160.1.CDS.177.358565.283
AMTR_s00146p00098380amborella_trichopodaERN0487181.418969.5946secale_cerealeSECCE6Rv1G0396940.1.CDS.177.49266.2379
AMTR_s00146p00098380amborella_trichopodaERN0487181.756869.9324triticum_aestivumTraesCS6B02G244300.1.cds177.813566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487158.445948.9865triticum_aestivumTraesCS3A02G532300.1.cds178.280565.6109
AMTR_s00146p00098380amborella_trichopodaERN0487181.756869.9324triticum_aestivumTraesCS6D02G197000.1.cds177.813566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487169.594657.7703triticum_aestivumTraesCS3B02G609900.1.cds172.280760
AMTR_s00146p00098380amborella_trichopodaERN0487182.094669.5946triticum_aestivumTraesCS6A02G214300.1.cds178.13566.2379
AMTR_s00146p00098380amborella_trichopodaERN0487139.864928.3784zea_maysZm00001eb424510_P00133.90824.1379
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946zea_maysZm00001eb246450_P00178.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487142.567630.7432zea_maysZm00001eb267310_P00146.840133.829
AMTR_s00146p00098380amborella_trichopodaERN0487165.878457.4324ananas_comosusAco031342.1.mrna1.cds179.91869.6721
AMTR_s00146p00098380amborella_trichopodaERN0487154.729746.6216ananas_comosusAco000163.1.mrna179.80367.9803
AMTR_s00146p00098380amborella_trichopodaERN0487186.486573.6487ananas_comosusAco022429.1.mrna1.cds182.315170.0965
AMTR_s00146p00098380amborella_trichopodaERN0487156.756839.1892caenorhabditis_elegansF53B7.3.162.921343.4457
AMTR_s00146p00098380amborella_trichopodaERN0487156.418944.2568drosophila_melanogasterFBpp008130561.397148.1618
AMTR_s00146p00098380amborella_trichopodaERN0487164.189249.3243homo_sapiensENSP0000037697366.666751.2281
AMTR_s00146p00098380amborella_trichopodaERN0487139.864922.6351saccharomyces_cerevisiaeYJR050W50.212828.5106
AMTR_s00146p00098380amborella_trichopodaERN0487181.081173.3108chenopodium_quinoaAUR62014898-RA:cds90.56681.8868
AMTR_s00146p00098380amborella_trichopodaERN0487179.054166.5541chara_brauniiGBG4403572.670861.1801
AMTR_s00146p00098380amborella_trichopodaERN0487174.324366.2162corylus_avellanaCav03g09650.t1.cds176.388968.0556
AMTR_s00146p00098380amborella_trichopodaERN0487179.054167.2297brachypodium_distachyonPNT6898978.787967.0034
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946oryza_glumipatulaOGLUM02G23500.178.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487190.202780.0676ipomoea_trilobaitb05g22000.t190.202780.0676
AMTR_s00146p00098380amborella_trichopodaERN0487189.864976.6892kalanchoe_fedtschenkoiKaladp0040s0520.1.v1.1.CDS.188.963275.9197
AMTR_s00146p00098380amborella_trichopodaERN0487160.135141.5541galdieria_sulphurariaEME3167966.666746.0674
AMTR_s00146p00098380amborella_trichopodaERN0487182.094669.9324triticum_urartuTuG1812G0600002107.01.T01.cds29097278.13566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487189.189275.3378eucalyptus_grandisKCW786018874.3333
AMTR_s00146p00098380amborella_trichopodaERN0487190.878481.7568cynara_cardunculusKVH8835089.666780.6667
AMTR_s00146p00098380amborella_trichopodaERN0487187.574.3243trifolium_pratenseTp57577_TGAC_v2_mRNA890485.478572.6073
AMTR_s00146p00098380amborella_trichopodaERN0487144.594636.1486gossypium_raimondiiKJB2006776.300661.8497
AMTR_s00146p00098380amborella_trichopodaERN0487187.837877.3649gossypium_raimondiiKJB1838886.956576.5886
AMTR_s00146p00098380amborella_trichopodaERN0487188.513574.3243arabidopsis_lyratafgenesh2_kg.3__2091__AT3G18790.187.333373.3333
AMTR_s00146p00098380amborella_trichopodaERN0487178.716267.2297hordeum_vulgareHORVU.MOREX.r3.6HG0550340.1.CDS177.152365.894
AMTR_s00146p00098380amborella_trichopodaERN0487178.378466.5541hordeum_vulgareHORVU.MOREX.r3.6HG0550330.1.CDS176.821265.2318
AMTR_s00146p00098380amborella_trichopodaERN0487181.756869.9324hordeum_vulgareHORVU.MOREX.r3.6HG0592240.1.CDS177.813566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487180.067667.5676hordeum_vulgareHORVU.MOREX.r3.6HG0546070.1.CDS175.961564.1026
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946oryza_barthiiOBART02G23140.178.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487186.148774.6622musa_acuminataMa09_p15600.183.061971.987
AMTR_s00146p00098380amborella_trichopodaERN0487188.513574.6622arabidopsis_hallerig21633.t1.cds187.333373.6667
AMTR_s00146p00098380amborella_trichopodaERN0487180.743268.5811eragrostis_tefEt_1B_014442.CDS77.096865.4839
AMTR_s00146p00098380amborella_trichopodaERN0487181.081168.5811eragrostis_tefEt_1A_009614.CDS72.948361.7021
AMTR_s00146p00098380amborella_trichopodaERN0487189.189276.3513corymbia_citriodoracds-KAF8033641.18875.3333
AMTR_s00146p00098380amborella_trichopodaERN0487188.175775.6757rosa_chinensisPRQ3823286.423874.1722
AMTR_s00146p00098380amborella_trichopodaERN0487187.837879.0541juglans_regiacds.Jr02_11260_p185.808677.2277
AMTR_s00146p00098380amborella_trichopodaERN0487187.837879.0541juglans_regiacds.Jr02_11270_p185.808677.2277
AMTR_s00146p00098380amborella_trichopodaERN0487187.837879.0541juglans_regiacds.Jr02_11280_p185.808677.2277
AMTR_s00146p00098380amborella_trichopodaERN0487181.756869.9324triticum_dicoccoidesTRIDC6BG039550.177.813566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487169.932457.0946triticum_dicoccoidesTRIDC3BG086850.173.144959.7173
AMTR_s00146p00098380amborella_trichopodaERN0487182.094669.9324triticum_dicoccoidesTRIDC6AG033220.178.13566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487187.162273.3108brassica_oleraceaBo5g117030.187.162273.3108
AMTR_s00146p00098380amborella_trichopodaERN0487148.986540.8784brassica_oleraceaBo1g116180.175.916263.3508
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946oryza_indicaBGIOSGA006098-PA78.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487161.824344.5946ciona_savignyiENSCSAVP0000001532660.59643.7086
AMTR_s00146p00098380amborella_trichopodaERN0487184.459570.9459dioscorea_rotundataDRNTG_02183.187.10873.1707
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946leersia_perrieriLPERR02G18840.178.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487189.52779.7297olea_europaeaOE9A084542C188.628878.9298
AMTR_s00146p00098380amborella_trichopodaERN0487172.97363.1757olea_europaeaOE9A106840C286.74775.1004
AMTR_s00146p00098380amborella_trichopodaERN0487189.864981.7568actinidia_chinensisPSS2667090.476282.3129
AMTR_s00146p00098380amborella_trichopodaERN0487140.540534.4595prunus_aviumPav_sc0000671.1_g280.1.mk:mrna87.591274.4526
AMTR_s00146p00098380amborella_trichopodaERN048715043.5811prunus_aviumPav_sc0001461.1_g180.1.mk:mrna86.046575
AMTR_s00146p00098380amborella_trichopodaERN0487149.662243.2432prunus_aviumPav_sc0001398.1_g010.1.mk:mrna85.465174.4186
AMTR_s00146p00098380amborella_trichopodaERN0487124.324322.973prunus_aviumPav_sc0000412.1_g140.1.mk:mrna86.74781.9277
AMTR_s00146p00098380amborella_trichopodaERN0487189.189278.3784quercus_subercds-POE44591.178.338368.8427
AMTR_s00146p00098380amborella_trichopodaERN0487188.513577.7027quercus_subercds-POF20805.152.087545.7256
AMTR_s00146p00098380amborella_trichopodaERN0487191.216279.7297nicotiana_attenuataOIT0313490.60479.1946
AMTR_s00146p00098380amborella_trichopodaERN0487187.162274.3243citrus_clementinaESR6033185.714373.0897
AMTR_s00146p00098380amborella_trichopodaERN0487186.824375.6757daucus_carotaKZN0272486.824375.6757
AMTR_s00146p00098380amborella_trichopodaERN0487186.824375.6757daucus_carotaKZN0920686.824375.6757
AMTR_s00146p00098380amborella_trichopodaERN0487192.229782.4324nymphaea_colorataNC9G0146960.1:cds92.229782.4324
AMTR_s00146p00098380amborella_trichopodaERN0487161.824342.9054ostreococcus_lucimarinusABO9557567.527746.8635
AMTR_s00146p00098380amborella_trichopodaERN0487188.175777.3649coffea_canephoraCDP127878776.3333
AMTR_s00146p00098380amborella_trichopodaERN0487181.756869.9324aegilops_tauschiiAET6Gv20566300.477.813566.5595
AMTR_s00146p00098380amborella_trichopodaERN0487189.52776.3513pistacia_veracds-EVM0013039.188.628875.5853
AMTR_s00146p00098380amborella_trichopodaERN0487189.52776.3513pistacia_veracds-EVM0011540.188.628875.5853
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946oryza_sativaOs02t0602500-0278.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487182.770370.2703panicum_halliiPUZ7642178.778166.881
AMTR_s00146p00098380amborella_trichopodaERN0487189.189278.7162quercus_lobataQL09p054497:mrna68.7560.6771
AMTR_s00146p00098380amborella_trichopodaERN0487188.175776.6892quercus_lobataQL12p002363:mrna:CDS:386.138674.9175
AMTR_s00146p00098380amborella_trichopodaERN0487181.756869.2568eragrostis_curvulaTVU2936672.672761.5616
AMTR_s00146p00098380amborella_trichopodaERN0487181.756868.5811eragrostis_curvulaTVU0350677.813565.2733
AMTR_s00146p00098380amborella_trichopodaERN0487189.189274.6622camelina_sativaCsa15g026430.1.cds18873.6667
AMTR_s00146p00098380amborella_trichopodaERN0487188.851373.9865camelina_sativaCsa19g026210.1.cds187.666773
AMTR_s00146p00098380amborella_trichopodaERN0487188.851374.3243camelina_sativaCsa01g021700.157.049947.7223
AMTR_s00146p00098380amborella_trichopodaERN0487171.283856.0811selaginella_moellendorffiiEFJ2651880.228163.1179
AMTR_s00146p00098380amborella_trichopodaERN0487179.054161.8243selaginella_moellendorffiiEFJ147737861
AMTR_s00146p00098380amborella_trichopodaERN0487191.216283.1081vitis_viniferaVitvi04g01610_P00190.60482.5503
AMTR_s00146p00098380amborella_trichopodaERN0487187.162274.3243eutrema_salsugineumESQ4801686.577273.8255
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946echinochloa_crusgalliscaffold139.163.cds78.456666.2379
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946echinochloa_crusgalliscaffold17.345.cds78.205166.0256
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.2568echinochloa_crusgalliscaffold123.19.cds62.086552.1628
AMTR_s00146p00098380amborella_trichopodaERN0487168.581159.4595corchorus_capsularisOMO8673882.520371.5447
AMTR_s00146p00098380amborella_trichopodaERN0487188.513577.027corchorus_capsularisOMO5586087.043275.7475
AMTR_s00146p00098380amborella_trichopodaERN0487189.189279.3919fraxinus_excelsiorFRAEX38873_v2_000318890.2.cds88.590678.8591
AMTR_s00146p00098380amborella_trichopodaERN0487121.283820.6081fraxinus_excelsiorFRAEX38873_v2_000327990.1.cds185.135182.4324
AMTR_s00146p00098380amborella_trichopodaERN0487190.202780.4054fraxinus_excelsiorFRAEX38873_v2_000233000.2.cds89.297779.5987
AMTR_s00146p00098380amborella_trichopodaERN0487189.52777.7027citrullus_lanatusCla97C09G178380.187.458775.9076
AMTR_s00146p00098380amborella_trichopodaERN0487189.864978.3784citrullus_lanatusCla97C01G004800.187.788876.5677
AMTR_s00146p00098380amborella_trichopodaERN0487182.432469.5946oryza_nivaraONIVA02G26050.178.456666.2379

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression