Description

Ensembl ID AMTR_s00119p00131140 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 594 bases Strand Minus strand
Position AmTr_v1.0_scaffold00119 : 1803914 - 1804507 RNA binding domain Ribosomal_L12
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERM97278 Ribosomal_L12 PF00542 1.2e-21 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERM97278 594 197aa ERM97278

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00119p00131140amborella_trichopodaERN1957393.258489.8876amborella_trichopodaERM9727884.26481.2183
AMTR_s00119p00131140amborella_trichopodaERM9436250.232634.4186amborella_trichopodaERM9727854.822337.5635
AMTR_s00119p00131140amborella_trichopodaERN1036763.716843.3628amborella_trichopodaERM9727836.548224.8731
AMTR_s00119p00131140amborella_trichopodaERN0124647.926334.1014amborella_trichopodaERM9727852.791937.5635
AMTR_s00119p00131140amborella_trichopodaERN1863254.87839.6341amborella_trichopodaERM9727845.685332.9949
AMTR_s00119p00131140amborella_trichopodaERN1983249.122832.7485amborella_trichopodaERM9727842.639628.4264

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00119p00131140amborella_trichopodaERM9727849.238640.6091papaver_somniferumRZC6774162.179551.2821
AMTR_s00119p00131140amborella_trichopodaERM9727868.020354.8223papaver_somniferumRZC8346469.430155.9585
AMTR_s00119p00131140amborella_trichopodaERM9727856.852846.1929marchantia_polymorphaPTQ3625948.908339.738
AMTR_s00119p00131140amborella_trichopodaERM9727869.035555.8376cannabis_sativa_femalecds.evm.model.03.726.3.5bd9b13770.466356.9948
AMTR_s00119p00131140amborella_trichopodaERM9727867.005155.8376ficus_caricaFCD_00003714-RA:cds68.041256.701
AMTR_s00119p00131140amborella_trichopodaERM9727864.46750.7614beta_vulgarisKMT1059667.195852.9101
AMTR_s00119p00131140amborella_trichopodaERM9727871.573659.3909theobroma_cacaoEOY2073471.938859.6939
AMTR_s00119p00131140amborella_trichopodaERM9727840.101535.533cucumis_meloMELO3C011871.2.158.955252.2388
AMTR_s00119p00131140amborella_trichopodaERM9727869.543160.4061cucumis_meloMELO3C003920.2.170.984561.658
AMTR_s00119p00131140amborella_trichopodaERM9727868.020356.8528arabidopsis_thalianaAT3G06040.272.04360.2151
AMTR_s00119p00131140amborella_trichopodaERM9727868.527955.8376populus_trichocarpaPotri.015G077200.2.v4.169.230856.4103
AMTR_s00119p00131140amborella_trichopodaERM9727867.005159.3909cucumis_sativusKGN5832868.393860.6218
AMTR_s00119p00131140amborella_trichopodaERM9727868.527957.3604brassica_junceacds.BjuB01g01490S71.052659.4737
AMTR_s00119p00131140amborella_trichopodaERM9727838.071132.4873brassica_junceacds.BjuA03g28790S81.521769.5652
AMTR_s00119p00131140amborella_trichopodaERM9727869.035556.3452brassica_napusCDY0522571.578958.4211
AMTR_s00119p00131140amborella_trichopodaERM9727867.512756.3452brassica_napusCDY2771570.370458.7302
AMTR_s00119p00131140amborella_trichopodaERM9727841.624434.5178brassica_napusCDY4999571.304359.1304
AMTR_s00119p00131140amborella_trichopodaERM9727870.558459.3909prunus_persicaONI0834872.020760.6218
AMTR_s00119p00131140amborella_trichopodaERM9727868.020355.8376cajanus_cajanC.cajan_25669.t.cds170.157157.5916
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.3756malus_domestica_goldenCDS:MD14G0156600.172.538959.5855
AMTR_s00119p00131140amborella_trichopodaERM9727872.081260.9137malus_domestica_goldenCDS:MD06G0141600.173.575162.1762
AMTR_s00119p00131140amborella_trichopodaERM9727869.543157.868glycine_maxKRH3686071.727759.6859
AMTR_s00119p00131140amborella_trichopodaERM9727870.050857.3604glycine_maxKRH1185171.87558.8542
AMTR_s00119p00131140amborella_trichopodaERM9727870.558459.3909prunus_dulcisVVA3050272.020760.6218
AMTR_s00119p00131140amborella_trichopodaERM9727867.512755.8376medicago_truncatulaKEH371037057.8947
AMTR_s00119p00131140amborella_trichopodaERM9727867.512756.3452lupinus_angustifoliusOIV9597271.505459.6774
AMTR_s00119p00131140amborella_trichopodaERM9727867.512756.3452phaseolus_vulgarisESW1942769.633558.1152
AMTR_s00119p00131140amborella_trichopodaERM9727868.020354.3147pisum_sativumPsat1g164640.1.cds170.157156.0209
AMTR_s00119p00131140amborella_trichopodaERM9727869.543157.3604vigna_angularisKOM5309571.727759.1623
AMTR_s00119p00131140amborella_trichopodaERM9727868.020355.3299vigna_unguiculataVigun06g135500.1.v1.2.CDS.170.157157.0681
AMTR_s00119p00131140amborella_trichopodaERM9727870.050858.3756manihot_esculentaOAY4778071.502659.5855
AMTR_s00119p00131140amborella_trichopodaERM9727869.035556.8528manihot_esculentaOAY3086970.466358.0311
AMTR_s00119p00131140amborella_trichopodaERM9727862.944250.2538solanum_lycopersicumSolyc09g010030.2.173.809558.9286
AMTR_s00119p00131140amborella_trichopodaERM9727869.543154.8223capsicum_annuumPHT7163868.159253.7313
AMTR_s00119p00131140amborella_trichopodaERM9727869.543157.3604vigna_radiataVradi10g06010.171.727759.1623
AMTR_s00119p00131140amborella_trichopodaERM9727868.527953.2995sesamum_indicumSIN_1024798.t.cds169.587654.1237
AMTR_s00119p00131140amborella_trichopodaERM9727867.512754.8223sesamum_indicumSIN_1002571.t.cds168.556755.6701
AMTR_s00119p00131140amborella_trichopodaERM9727869.543156.8528lactuca_sativacds-PLY94173.172.872359.5745
AMTR_s00119p00131140amborella_trichopodaERM9727868.020355.8376helianthus_annuusCDS:HanXRQr2_Chr08g0355191.170.526357.8947
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.8832helianthus_annuusCDS:HanXRQr2_Chr05g0229881.172.538960.1036
AMTR_s00119p00131140amborella_trichopodaERM9727862.436550.2538avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0000298.150.617340.7407
AMTR_s00119p00131140amborella_trichopodaERM9727863.959451.269lolium_perennecds.KYUSt_chr6.2210465.62552.6042
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.7766oryza_longistaminataKN538855.1_FGP03063.730652.8497
AMTR_s00119p00131140amborella_trichopodaERM9727862.436549.7462avena_sativa_sangAVESA.00010b.r2.6AG1013220.2.CDS.164.736851.5789
AMTR_s00119p00131140amborella_trichopodaERM9727863.451851.269avena_sativa_sangAVESA.00010b.r2.6CG1106690.1.CDS.165.789553.1579
AMTR_s00119p00131140amborella_trichopodaERM9727862.944250.2538avena_sativa_sangAVESA.00010b.r2.6DG1186070.1.CDS.165.263252.1053
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.3756solanum_tuberosumPGSC0003DMT40002287172.164959.2784
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.7766oryza_rufipogonORUFI02G07660.163.730652.8497
AMTR_s00119p00131140amborella_trichopodaERM9727855.329946.7005oryza_brachyanthaOB02G16850.169.426858.5987
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.7766oryza_glaberrimaORGLA02G0071000.163.730652.8497
AMTR_s00119p00131140amborella_trichopodaERM9727862.944252.2843oryza_punctataOPUNC02G06760.164.248753.3679
AMTR_s00119p00131140amborella_trichopodaERM9727864.46752.7919setaria_italicaKQL2824966.145854.1667
AMTR_s00119p00131140amborella_trichopodaERM9727864.46752.7919setaria_viridisTKW3742466.145854.1667
AMTR_s00119p00131140amborella_trichopodaERM9727856.345245.1777sorghum_bicolorOQU8458165.680552.6627
AMTR_s00119p00131140amborella_trichopodaERM9727856.345245.6853sorghum_bicolorOQU8458365.680553.2544
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.2386triticum_turgidumTRITD6Bv1G071670.164.583350.5208
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.7462triticum_turgidumTRITD6Av1G064730.164.583351.0417
AMTR_s00119p00131140amborella_trichopodaERM9727862.944250.7614secale_cerealeSECCE6Rv1G0387650.1.CDS.164.921552.356
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.7462triticum_aestivumTraesCS6A02G161800.1.cds164.583351.0417
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.2386triticum_aestivumTraesCS6D02G150400.1.cds164.583350.5208
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.2386triticum_aestivumTraesCS6B02G189400.1.cds164.583350.5208
AMTR_s00119p00131140amborella_trichopodaERM9727862.944250.7614zea_maysZm00001eb205850_P00164.921552.356
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.7462zea_maysZm00001eb235930_P00264.583351.0417
AMTR_s00119p00131140amborella_trichopodaERM9727865.989854.3147ananas_comosusAco020081.1.mrna1.cds167.708355.7292
AMTR_s00119p00131140amborella_trichopodaERM9727863.959452.2843chenopodium_quinoaAUR62008204-RA:cds66.666754.4974
AMTR_s00119p00131140amborella_trichopodaERM9727852.284340.6091chara_brauniiGBG6832752.284340.6091
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.8832corylus_avellanaCav03g04840.t1.cds172.164959.7938
AMTR_s00119p00131140amborella_trichopodaERM9727863.959450.2538brachypodium_distachyonKQJ9389265.62551.5625
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.7766oryza_glumipatulaOGLUM02G07600.263.730652.8497
AMTR_s00119p00131140amborella_trichopodaERM9727866.497554.3147ipomoea_trilobaitb12g08760.t154.132244.2149
AMTR_s00119p00131140amborella_trichopodaERM9727867.005155.3299ipomoea_trilobaitb11g21110.t168.041256.1856
AMTR_s00119p00131140amborella_trichopodaERM9727870.050858.3756kalanchoe_fedtschenkoiKaladp0032s0086.1.v1.1.CDS.171.13459.2784
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.7462triticum_urartuTuG1812G0600001683.01.T01.cds45717764.583351.0417
AMTR_s00119p00131140amborella_trichopodaERM9727870.558458.8832eucalyptus_grandisKCW7780269.849258.2915
AMTR_s00119p00131140amborella_trichopodaERM9727871.573657.3604cynara_cardunculusKVH9893875.806460.7527
AMTR_s00119p00131140amborella_trichopodaERM9727867.512754.8223trifolium_pratenseTp57577_TGAC_v2_mRNA830869.633556.5445
AMTR_s00119p00131140amborella_trichopodaERM9727871.573659.3909gossypium_raimondiiKJB5291272.307760
AMTR_s00119p00131140amborella_trichopodaERM9727868.020356.3452arabidopsis_lyratafgenesh2_kg.3__604__AT3G06040.272.04359.6774
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.269oryza_barthiiOBART02G07550.163.730652.3316
AMTR_s00119p00131140amborella_trichopodaERM9727855.837648.2234asparagus_officinalisONK5650085.271373.6434
AMTR_s00119p00131140amborella_trichopodaERM9727868.020357.868musa_acuminataMa11_p24780.269.791759.375
AMTR_s00119p00131140amborella_trichopodaERM9727868.527956.3452arabidopsis_hallerig06397.t1.cds172.580659.6774
AMTR_s00119p00131140amborella_trichopodaERM9727855.329944.1624eragrostis_tefEt_1B_010231.CDS64.49751.4793
AMTR_s00119p00131140amborella_trichopodaERM9727855.329944.1624eragrostis_tefEt_1A_005256.CDS64.49751.4793
AMTR_s00119p00131140amborella_trichopodaERM9727870.050858.3756corymbia_citriodoracds-KAF8032804.171.13459.2784
AMTR_s00119p00131140amborella_trichopodaERM9727867.005153.2995corymbia_citriodoracds-KAF8009818.168.7554.6875
AMTR_s00119p00131140amborella_trichopodaERM9727870.050856.3452rosa_chinensisPRQ1730371.502657.513
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.3756juglans_regiacds.Jr02_03300_p172.538959.5855
AMTR_s00119p00131140amborella_trichopodaERM9727862.944251.7766saccharum_spontaneumSspon.04G0015630-2B-mRNA-147.148338.7833
AMTR_s00119p00131140amborella_trichopodaERM9727860.913749.7462saccharum_spontaneumSspon.04G0015630-3C-mRNA-1.cds164.516152.6882
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.269saccharum_spontaneumSspon.04G0027920-1P-mRNA-1:cds26.739121.9565
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.2386triticum_dicoccoidesTRIDC6BG028440.151.028839.9177
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.7462triticum_dicoccoidesTRIDC6AG022930.346.616536.8421
AMTR_s00119p00131140amborella_trichopodaERM9727869.035556.3452brassica_oleraceaBo5g144830.171.578958.4211
AMTR_s00119p00131140amborella_trichopodaERM9727843.147234.5178brassica_oleraceaBo3g060380.173.91359.1304
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.7766oryza_indicaBGIOSGA006937-PA63.730652.8497
AMTR_s00119p00131140amborella_trichopodaERM9727871.573656.8528dioscorea_rotundataDRNTG_08658.1.cds175.401159.893
AMTR_s00119p00131140amborella_trichopodaERM9727861.928951.7766leersia_perrieriLPERR02G06520.152.813944.1558
AMTR_s00119p00131140amborella_trichopodaERM9727869.035554.8223olea_europaeaOE9A038465C170.103155.6701
AMTR_s00119p00131140amborella_trichopodaERM9727868.527956.8528olea_europaeaOE9A107336C169.587657.732
AMTR_s00119p00131140amborella_trichopodaERM9727870.050856.8528actinidia_chinensisPSS0778071.13457.732
AMTR_s00119p00131140amborella_trichopodaERM9727870.558459.3909prunus_aviumPav_sc0001309.1_g980.1.mk:CDS:172.020760.6218
AMTR_s00119p00131140amborella_trichopodaERM9727839.086331.4721prunus_aviumPav_sc0004634.1_g100.1.br:mrna55.395744.6043
AMTR_s00119p00131140amborella_trichopodaERM9727838.071130.9645prunus_aviumPav_sc0002106.1_g050.1.br:CDS:172.115458.6538
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.8832quercus_subercds-POE82808.172.538960.1036
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.8832quercus_subercds-POE82810.172.538960.1036
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.8832quercus_subercds-POE76091.172.538960.1036
AMTR_s00119p00131140amborella_trichopodaERM9727870.050857.3604nicotiana_attenuataOIT0169870.050857.3604
AMTR_s00119p00131140amborella_trichopodaERM9727868.527952.7919citrus_clementinaESR4229669.948253.886
AMTR_s00119p00131140amborella_trichopodaERM9727868.527956.3452brassica_rapa_ro18A05p051910.1_BraROA.131.177825.6351
AMTR_s00119p00131140amborella_trichopodaERM9727867.005154.8223daucus_carotaKZM8906368.7556.25
AMTR_s00119p00131140amborella_trichopodaERM9727877.66563.9594nymphaea_colorataNC8G0214240.1:cds79.274665.285
AMTR_s00119p00131140amborella_trichopodaERM9727877.66564.9746nymphaea_colorataNC1G0177110.1:cds61.445851.4056
AMTR_s00119p00131140amborella_trichopodaERM9727840.609130.4569ostreococcus_lucimarinusABO9984657.97143.4783
AMTR_s00119p00131140amborella_trichopodaERM9727870.558459.3909coffea_canephoraCDP1851771.649560.3093
AMTR_s00119p00131140amborella_trichopodaERM9727870.558459.3909coffea_canephoraCDP0035364.055353.917
AMTR_s00119p00131140amborella_trichopodaERM9727869.035557.3604coffea_canephoraCDP1851957.872348.0851
AMTR_s00119p00131140amborella_trichopodaERM9727862.944249.2386aegilops_tauschiiAET6Gv20408000.245.756535.7934
AMTR_s00119p00131140amborella_trichopodaERM9727872.081261.9289pistacia_veracds-EVM0007142.173.575163.2124
AMTR_s00119p00131140amborella_trichopodaERM9727852.284343.6548digitaria_exilisDexi1B01G0007840.1:cds74.100761.8705
AMTR_s00119p00131140amborella_trichopodaERM9727852.284343.1472digitaria_exilisDexi1A01G0008130.1:cds74.100761.1511
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.7766oryza_sativaOs02t0198900-0163.730652.8497
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.269panicum_halliiPUZ7454864.062552.6042
AMTR_s00119p00131140amborella_trichopodaERM9727871.06658.8832quercus_lobataQL10p015865:mrna:CDS:172.538960.1036
AMTR_s00119p00131140amborella_trichopodaERM9727869.543157.3604camelina_sativaCsa01g007040.1.cds172.872360.1064
AMTR_s00119p00131140amborella_trichopodaERM9727869.543157.3604camelina_sativaCsa19g008680.1.cds172.872360.1064
AMTR_s00119p00131140amborella_trichopodaERM9727869.035556.8528camelina_sativaCsa15g007610.1.cds172.340459.5745
AMTR_s00119p00131140amborella_trichopodaERM9727844.670132.9949selaginella_moellendorffiiEFJ1278758.278143.0464
AMTR_s00119p00131140amborella_trichopodaERM9727844.670132.9949selaginella_moellendorffiiEFJ1394758.278143.0464
AMTR_s00119p00131140amborella_trichopodaERM9727871.06655.8376vitis_viniferaVitvi17g00824_P00172.538956.9948
AMTR_s00119p00131140amborella_trichopodaERM9727870.558457.3604eutrema_salsugineumESQ4944273.936260.1064
AMTR_s00119p00131140amborella_trichopodaERM9727863.451852.2843echinochloa_crusgalliscaffold6.178.cds23.364519.2523
AMTR_s00119p00131140amborella_trichopodaERM9727862.436551.7766echinochloa_crusgalliscaffold258.10.cds55.405445.9459
AMTR_s00119p00131140amborella_trichopodaERM9727869.035556.8528corchorus_capsularisOMO5994970.103157.732
AMTR_s00119p00131140amborella_trichopodaERM9727869.035557.868fraxinus_excelsiorFRAEX38873_v2_000087340.1.cds170.103158.7629
AMTR_s00119p00131140amborella_trichopodaERM9727868.527952.7919fraxinus_excelsiorFRAEX38873_v2_000394510.1.cds169.587653.6082
AMTR_s00119p00131140amborella_trichopodaERM9727869.543157.3604citrullus_lanatusCla97C06G125280.161.99151.1312
AMTR_s00119p00131140amborella_trichopodaERM9727858.883248.731oryza_nivaraONIVA02G09080.162.365651.6129

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression