Description

Ensembl ID AMTR_s00107p00035950 Gene ID Accession -
Symbol Alias - Full Name Ribosomal protein L1p/L10e family
Status Confidence Length 23465 bases Strand Minus strand
Position AmTr_v1.0_scaffold00107 : 275349 - 298813 RNA binding domain Ribosomal_L1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN00288 Ribosomal_L1 PF00687 5e-49 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN00288 1086 361aa ERN00288

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00107p00035950

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00107p00035950amborella_trichopodaERN0028848.199433.795chondrus_crispusCCP3808873.417751.4768
AMTR_s00107p00035950amborella_trichopodaERN0028872.853261.7729papaver_somniferumRZC8294469.576758.9947
AMTR_s00107p00035950amborella_trichopodaERN0028873.130261.7729papaver_somniferumRZC7762167.175656.743
AMTR_s00107p00035950amborella_trichopodaERN0028862.049949.0305marchantia_polymorphaPTQ3992168.923154.4615
AMTR_s00107p00035950amborella_trichopodaERN0028875.346363.9889cannabis_sativa_femalecds.evm.model.03.7273.712762.6016
AMTR_s00107p00035950amborella_trichopodaERN0028871.191160.3878beta_vulgarisKMT1878571.787760.8939
AMTR_s00107p00035950amborella_trichopodaERN0028874.792264.8199theobroma_cacaoEOX9663075.842765.7303
AMTR_s00107p00035950amborella_trichopodaERN0028857.063742.1053chlamydomonas_reinhardtiiPNW8649669.360351.1785
AMTR_s00107p00035950amborella_trichopodaERN0028854.847649.0305cucumis_meloMELO3C023997.2.196.116585.9223
AMTR_s00107p00035950amborella_trichopodaERN0028871.468161.7729arabidopsis_thalianaAT3G63490.174.566564.4509
AMTR_s00107p00035950amborella_trichopodaERN0028876.177367.036populus_trichocarpaPotri.009G057100.3.v4.177.464868.169
AMTR_s00107p00035950amborella_trichopodaERN0028875.069366.759populus_trichocarpaPotri.001G262400.6.v4.176.33867.8873
AMTR_s00107p00035950amborella_trichopodaERN0028875.069365.097cucumis_sativusKGN4509475.277865.2778
AMTR_s00107p00035950amborella_trichopodaERN0028875.069365.651cucumis_sativusKGN5857276.123666.573
AMTR_s00107p00035950amborella_trichopodaERN0028871.191160.9418brassica_junceacds.BjuA04g00050S75.811264.8968
AMTR_s00107p00035950amborella_trichopodaERN0028871.191160.9418brassica_napusCDY5371275.811264.8968
AMTR_s00107p00035950amborella_trichopodaERN0028870.914160.6648brassica_napusCDX9390376.417965.3731
AMTR_s00107p00035950amborella_trichopodaERN0028874.238264.5429prunus_persicaONI2055575.49365.6338
AMTR_s00107p00035950amborella_trichopodaERN0028873.684263.7119cajanus_cajanC.cajan_20944.t77.777867.2515
AMTR_s00107p00035950amborella_trichopodaERN0028873.684263.1579malus_domestica_goldenmRNA:MD07G001720075.568264.7727
AMTR_s00107p00035950amborella_trichopodaERN0028873.684263.7119malus_domestica_goldenmRNA:MD02G02523007665.7143
AMTR_s00107p00035950amborella_trichopodaERN0028872.299262.6039glycine_maxKRH2390276.764766.4706
AMTR_s00107p00035950amborella_trichopodaERN0028874.792264.2659glycine_maxKRH3990778.260967.2464
AMTR_s00107p00035950amborella_trichopodaERN0028873.961264.2659prunus_dulcisVVA2520175.211365.3521
AMTR_s00107p00035950amborella_trichopodaERN0028872.576261.4958medicago_truncatulaKEH1696272.980561.8384
AMTR_s00107p00035950amborella_trichopodaERN0028870.914161.4958lupinus_angustifoliusOIW0555578.048867.6829
AMTR_s00107p00035950amborella_trichopodaERN0028865.92855.6787physcomitrium_patensPp3c24_9740V3.267.806357.265
AMTR_s00107p00035950amborella_trichopodaERN0028865.92856.5097physcomitrium_patensPp3c23_7820V3.267.231657.6271
AMTR_s00107p00035950amborella_trichopodaERN0028864.265955.4017physcomitrium_patensPp3c23_11170V3.165.722456.6572
AMTR_s00107p00035950amborella_trichopodaERN0028872.853262.8809phaseolus_vulgarisESW0340575.358265.043
AMTR_s00107p00035950amborella_trichopodaERN0028872.576261.7729pisum_sativumPsat7g200640.1.cds70.810860.2703
AMTR_s00107p00035950amborella_trichopodaERN0028872.299262.3269vigna_angularisKOM5124674.785164.4699
AMTR_s00107p00035950amborella_trichopodaERN0028872.299262.6039vigna_unguiculataVigun11g214900.1.v1.274.785164.7564
AMTR_s00107p00035950amborella_trichopodaERN0028876.454367.313manihot_esculentaOAY4484678.18768.8385
AMTR_s00107p00035950amborella_trichopodaERN0028875.346364.8199manihot_esculentaOAY3994673.315463.0728
AMTR_s00107p00035950amborella_trichopodaERN0028874.792264.2659solanum_lycopersicumSolyc01g087730.3.179.881768.6391
AMTR_s00107p00035950amborella_trichopodaERN0028872.576262.3269vigna_radiataVradi02g00890.175.071664.4699
AMTR_s00107p00035950amborella_trichopodaERN0028873.130264.8199sesamum_indicumSIN_1008150.t75.213766.6667
AMTR_s00107p00035950amborella_trichopodaERN0028870.637159.8338lactuca_sativacds-PLY69251.172.649661.5385
AMTR_s00107p00035950amborella_trichopodaERN0028869.806159.5568helianthus_annuusmRNA:HanXRQr2_Chr14g064066172.206361.6046
AMTR_s00107p00035950amborella_trichopodaERN0028870.360157.3407avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0001258.161.352750
AMTR_s00107p00035950amborella_trichopodaERN0028870.360157.0637avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0001243.165.803153.3679
AMTR_s00107p00035950amborella_trichopodaERN0028869.529156.7867lolium_perennecds.KYUSt_chr1.2967671.306858.2386
AMTR_s00107p00035950amborella_trichopodaERN0028860.941851.5235oryza_longistaminataKN538820.1_FGP02783.018970.1887
AMTR_s00107p00035950amborella_trichopodaERN0028870.360157.3407avena_sativa_sangAVESA.00010b.r2.1DG0170780.1.CDS72.159158.8068
AMTR_s00107p00035950amborella_trichopodaERN0028870.083157.0637avena_sativa_sangAVESA.00010b.r2.1AG0019940.1.CDS72.079858.6895
AMTR_s00107p00035950amborella_trichopodaERN0028874.515263.7119solanum_tuberosumPGSC0003DMT40001764678.885667.4487
AMTR_s00107p00035950amborella_trichopodaERN0028860.387849.8615oryza_brachyanthaOB05G22910.184.169969.4981
AMTR_s00107p00035950amborella_trichopodaERN0028871.468158.1717oryza_glaberrimaORGLA05G0128700.171.866358.4958
AMTR_s00107p00035950amborella_trichopodaERN0028871.745258.1717oryza_punctataOPUNC05G13080.173.163859.322
AMTR_s00107p00035950amborella_trichopodaERN0028870.637159.8338setaria_italicaKQL1567674.127962.7907
AMTR_s00107p00035950amborella_trichopodaERN0028870.637159.8338setaria_viridisTKW2755874.127962.7907
AMTR_s00107p00035950amborella_trichopodaERN0028871.468158.4488sorghum_bicolorEES1816274.566560.9827
AMTR_s00107p00035950amborella_trichopodaERN0028869.252157.0637triticum_turgidumTRITD1Bv1G142860.172.046159.366
AMTR_s00107p00035950amborella_trichopodaERN0028869.252156.7867secale_cerealeSECCE1Rv1G0035570.172.254359.2486
AMTR_s00107p00035950amborella_trichopodaERN0028869.252157.0637triticum_aestivumTraesCS1D02G242500.171.839159.1954
AMTR_s00107p00035950amborella_trichopodaERN0028869.252157.0637triticum_aestivumTraesCS1B02G254000.172.046159.366
AMTR_s00107p00035950amborella_trichopodaERN0028871.191157.8947zea_maysZm00001eb287080_P00174.492860.5797
AMTR_s00107p00035950amborella_trichopodaERN0028870.083160.6648ananas_comosusAco019565.1.mrna168.378459.1892
AMTR_s00107p00035950amborella_trichopodaERN0028870.637160.3878chenopodium_quinoaAUR62009416-RA:cds72.23861.7564
AMTR_s00107p00035950amborella_trichopodaERN0028863.434949.8615chara_brauniiGBG8674156.127544.1176
AMTR_s00107p00035950amborella_trichopodaERN0028870.914161.4958arabis_alpinaKFK3550177.108466.8675
AMTR_s00107p00035950amborella_trichopodaERN0028854.016649.0305corylus_avellanaCav01g33210.t181.5974.0586
AMTR_s00107p00035950amborella_trichopodaERN0028869.806156.5097brachypodium_distachyonKQK065547258.2857
AMTR_s00107p00035950amborella_trichopodaERN0028872.576263.1579ipomoea_trilobaitb09g17180.t173.389463.8655
AMTR_s00107p00035950amborella_trichopodaERN0028868.421157.0637ipomoea_trilobaitb11g02190.t166.756855.6757
AMTR_s00107p00035950amborella_trichopodaERN0028854.293648.7535kalanchoe_fedtschenkoiKaladp0081s0125.1.v1.195.145685.4369
AMTR_s00107p00035950amborella_trichopodaERN0028870.914162.0499kalanchoe_fedtschenkoiKaladp0094s0144.1.v1.171.910162.9213
AMTR_s00107p00035950amborella_trichopodaERN0028869.252157.0637triticum_urartuTuG1812G0100002828.01.T0172.046159.366
AMTR_s00107p00035950amborella_trichopodaERN0028874.792267.59eucalyptus_grandisKCW6604162.355756.351
AMTR_s00107p00035950amborella_trichopodaERN0028846.814435.1801cyanidioschyzon_merolaeCMV103CT75.446456.6964
AMTR_s00107p00035950amborella_trichopodaERN0028871.745261.7729trifolium_pratenseTp57577_TGAC_v2_mRNA3119170.380460.5978
AMTR_s00107p00035950amborella_trichopodaERN0028875.069364.8199gossypium_raimondiiKJB2497475.487565.1811
AMTR_s00107p00035950amborella_trichopodaERN0028871.191161.7729arabidopsis_lyratascaffold_503640.174.709364.8256
AMTR_s00107p00035950amborella_trichopodaERN0028851.246543.7673oryza_barthiiOBART05G15020.184.862472.4771
AMTR_s00107p00035950amborella_trichopodaERN0028872.853263.1579asparagus_officinalisONK6744242.215136.5971
AMTR_s00107p00035950amborella_trichopodaERN0028871.468161.4958musa_acuminataMa08_p09340.173.714363.4286
AMTR_s00107p00035950amborella_trichopodaERN0028873.130262.8809musa_acuminataMa11_p05860.173.537663.2312
AMTR_s00107p00035950amborella_trichopodaERN0028871.191161.7729arabidopsis_hallerig30179.t174.709364.8256
AMTR_s00107p00035950amborella_trichopodaERN0028867.86756.7867eragrostis_tefEt_9B_064274.CDS71.220959.593
AMTR_s00107p00035950amborella_trichopodaERN0028870.360158.4488eragrostis_tefEt_9A_061696.CDS72.571460.2857
AMTR_s00107p00035950amborella_trichopodaERN0028874.792265.928corymbia_citriodoracds-KAF8020222.175.41966.4804
AMTR_s00107p00035950amborella_trichopodaERN0028874.792263.1579rosa_chinensisPRQ5482176.704564.7727
AMTR_s00107p00035950amborella_trichopodaERN0028877.008367.036juglans_regiacds.Jr05_00560_p170.20261.1111
AMTR_s00107p00035950amborella_trichopodaERN0028877.008367.036juglans_regiacds.Jr05_00570_p177.222267.2222
AMTR_s00107p00035950amborella_trichopodaERN0028870.914158.1717saccharum_spontaneumSspon.07G0008850-1T-mRNA-1:cds73.988460.6936
AMTR_s00107p00035950amborella_trichopodaERN0028861.495853.1856triticum_dicoccoidesTRIDC1AG036560.381.021970.073
AMTR_s00107p00035950amborella_trichopodaERN0028862.326953.7396triticum_dicoccoidesTRIDC1BG041580.290.361477.9116
AMTR_s00107p00035950amborella_trichopodaERN0028870.360158.4488oryza_indicaBGIOSGA019789-PA61.352750.9662
AMTR_s00107p00035950amborella_trichopodaERN0028871.745262.0499dioscorea_rotundataDRNTG_17798.274.425364.3678
AMTR_s00107p00035950amborella_trichopodaERN0028870.914157.3407leersia_perrieriLPERR05G11880.172.112758.3099
AMTR_s00107p00035950amborella_trichopodaERN0028871.191161.2188olea_europaeaOE9A028721C167.8158.3113
AMTR_s00107p00035950amborella_trichopodaERN0028868.421158.4488olea_europaeaOE9A082173C177.187565.9375
AMTR_s00107p00035950amborella_trichopodaERN0028872.853263.1579actinidia_chinensisPSS0997177.126166.8622
AMTR_s00107p00035950amborella_trichopodaERN0028872.576263.4349actinidia_chinensisPSS2444276.832867.1554
AMTR_s00107p00035950amborella_trichopodaERN0028874.515264.8199prunus_aviumPav_sc0003515.1_g130.1.mk:mrna75.774765.9155
AMTR_s00107p00035950amborella_trichopodaERN0028875.900366.205quercus_subercds-POE74250.175.068565.4795
AMTR_s00107p00035950amborella_trichopodaERN0028873.130263.4349nicotiana_attenuataOIT0745677.647167.3529
AMTR_s00107p00035950amborella_trichopodaERN0028873.961265.374citrus_clementinaESR5219672.357763.9566
AMTR_s00107p00035950amborella_trichopodaERN0028869.529158.4488daucus_carotaKZM8209171.919860.4585
AMTR_s00107p00035950amborella_trichopodaERN0028872.576264.2659nymphaea_colorataNC2G0191620.1:cds74.857166.2857
AMTR_s00107p00035950amborella_trichopodaERN0028844.598334.349ostreococcus_lucimarinusABO9763477.033559.3301
AMTR_s00107p00035950amborella_trichopodaERN0028876.731365.928coffea_canephoraCDP1782274.064263.6364
AMTR_s00107p00035950amborella_trichopodaERN0028865.65155.6787aegilops_tauschiiAET1Gv20591100.385.251872.3022
AMTR_s00107p00035950amborella_trichopodaERN0028874.238265.097pistacia_veracds-EVM0013275.172.826163.8587
AMTR_s00107p00035950amborella_trichopodaERN0028869.806158.1717digitaria_exilisDexi3B01G0025950.1:cds71.590959.6591
AMTR_s00107p00035950amborella_trichopodaERN0028871.468158.1717oryza_sativaOs05t0388500-0171.866358.4958
AMTR_s00107p00035950amborella_trichopodaERN0028871.468159.2798panicum_halliiPUZ6618174.566561.8497
AMTR_s00107p00035950amborella_trichopodaERN0028875.900365.651quercus_lobataQL04p009835:mrna74.659464.5777
AMTR_s00107p00035950amborella_trichopodaERN0028870.360158.7258eragrostis_curvulaTVU1922272.779460.745
AMTR_s00107p00035950amborella_trichopodaERN0028871.468162.0499camelina_sativaCsa07g001100.174.137964.3678
AMTR_s00107p00035950amborella_trichopodaERN0028871.468162.0499camelina_sativaCsa16g001030.173.714364
AMTR_s00107p00035950amborella_trichopodaERN0028871.468161.7729camelina_sativaCsa05g095880.173.714363.7143
AMTR_s00107p00035950amborella_trichopodaERN0028866.20554.8476selaginella_moellendorffiiEFJ3417969.679357.7259
AMTR_s00107p00035950amborella_trichopodaERN0028866.48255.6787selaginella_moellendorffiiEFJ2179269.767458.4302
AMTR_s00107p00035950amborella_trichopodaERN0028874.792265.928vitis_viniferaVitvi13g01650_P00177.809868.5879
AMTR_s00107p00035950amborella_trichopodaERN0028871.745262.3269eutrema_salsugineumESQ4372072.752863.2022
AMTR_s00107p00035950amborella_trichopodaERN0028868.14456.7867echinochloa_crusgalliscaffold123.117.cds54.910745.7589
AMTR_s00107p00035950amborella_trichopodaERN0028870.360158.7258echinochloa_crusgalliscaffold22.75.cds74.052561.8076
AMTR_s00107p00035950amborella_trichopodaERN0028870.914159.2798echinochloa_crusgalliscaffold8.639.cds74.202962.029
AMTR_s00107p00035950amborella_trichopodaERN0028875.069364.8199corchorus_capsularisOMO6972076.553766.1017
AMTR_s00107p00035950amborella_trichopodaERN0028872.299261.7729fraxinus_excelsiorFRAEX38873_v2_000103040.1.cds73.314662.6404
AMTR_s00107p00035950amborella_trichopodaERN0028875.900365.651citrullus_lanatusCla97C09G166750.176.111165.8333
AMTR_s00107p00035950amborella_trichopodaERN0028874.515265.928citrullus_lanatusCla97C10G195000.174.515265.928

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression