Description

Ensembl ID AMTR_s00102p00018040 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 36236 bases Strand Plus strand
Position AmTr_v1.0_scaffold00102 : 58051 - 94286 RNA binding domain RNA_ligase
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN00501 RNA_ligase PF09414 9.8e-08 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN00501 2091 696aa ERN00501

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00102p00018040amborella_trichopodaERN1245522.512.6786amborella_trichopodaERN0050136.206920.4023
AMTR_s00102p00018040amborella_trichopodaERN0563027.413918.0284amborella_trichopodaERN0050158.333338.3621
AMTR_s00102p00018040amborella_trichopodaERN1982699.224898.4496amborella_trichopodaERN0050118.390818.2471
AMTR_s00102p00018040amborella_trichopodaERN1982593.687.2amborella_trichopodaERN0050116.810315.6609

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00102p00018040amborella_trichopodaERN0050164.224147.7011chondrus_crispusCDF3901754.050840.1451
AMTR_s00102p00018040amborella_trichopodaERN0050177.729967.0977papaver_somniferumRZC7054870.71961.0458
AMTR_s00102p00018040amborella_trichopodaERN0050141.95435.2011papaver_somniferumRZC5145679.781466.9399
AMTR_s00102p00018040amborella_trichopodaERN0050159.770150.431papaver_somniferumRZC5153273.628362.1239
AMTR_s00102p00018040amborella_trichopodaERN0050161.781651.0057papaver_somniferumRZC5005672.268959.6639
AMTR_s00102p00018040amborella_trichopodaERN0050178.59267.8161papaver_somniferumRZC7704170.946861.2192
AMTR_s00102p00018040amborella_trichopodaERN0050138.074732.3276papaver_somniferumRZC5011873.407262.3269
AMTR_s00102p00018040amborella_trichopodaERN0050179.741466.954marchantia_polymorphaPTQ4173578.389865.8192
AMTR_s00102p00018040amborella_trichopodaERN0050181.034568.8218cannabis_sativa_femalecds.evm.model.06.109470.943460.2516
AMTR_s00102p00018040amborella_trichopodaERN0050182.327670.977ficus_caricaFCD_00001184-RA:cds72.348562.3737
AMTR_s00102p00018040amborella_trichopodaERN0050179.45467.3851beta_vulgarisKMT0236056.085247.5659
AMTR_s00102p00018040amborella_trichopodaERN0050165.229944.5402beta_vulgarisKMT0377864.305943.9093
AMTR_s00102p00018040amborella_trichopodaERN0050113.649411.6379beta_vulgarisKMS9808075.396864.2857
AMTR_s00102p00018040amborella_trichopodaERN0050180.890867.5287theobroma_cacaoEOY3449570.37558.75
AMTR_s00102p00018040amborella_trichopodaERN0050165.229948.8506chlamydomonas_reinhardtiiPNW8063746.659834.9435
AMTR_s00102p00018040amborella_trichopodaERN0050180.890868.5345cucumis_meloMELO3C026949.2.166.313356.1837
AMTR_s00102p00018040amborella_trichopodaERN0050170.689755.3161arabidopsis_thalianaAT1G49250.174.885858.5997
AMTR_s00102p00018040amborella_trichopodaERN0050180.172465.9483arabidopsis_thalianaAT1G08130.170.632958.1013
AMTR_s00102p00018040amborella_trichopodaERN0050182.471369.5402populus_trichocarpaPotri.009G005900.2.v4.171.7560.5
AMTR_s00102p00018040amborella_trichopodaERN0050181.178269.3966cucumis_sativusKGN4687670.536860.2996
AMTR_s00102p00018040amborella_trichopodaERN0050178.735665.3736brassica_junceacds.BjuB04g27620S69.808957.9618
AMTR_s00102p00018040amborella_trichopodaERN0050179.166765.5172brassica_junceacds.BjuA09g03100S72.787360.2378
AMTR_s00102p00018040amborella_trichopodaERN0050178.879365.6609brassica_junceacds.BjuA06g37430S71.11459.1969
AMTR_s00102p00018040amborella_trichopodaERN0050179.02365.6609brassica_napusCDX9509275.136662.4317
AMTR_s00102p00018040amborella_trichopodaERN0050179.02365.9483brassica_napusCDY2270270.876359.1495
AMTR_s00102p00018040amborella_trichopodaERN0050179.166765.5172brassica_napusCDY0630070.64158.4615
AMTR_s00102p00018040amborella_trichopodaERN0050178.879365.5172brassica_napusCDX935887562.2951
AMTR_s00102p00018040amborella_trichopodaERN0050181.896670.8333prunus_persicaONI0092972.243362.4842
AMTR_s00102p00018040amborella_trichopodaERN0050178.160964.0805cajanus_cajanC.cajan_21590.t70.833358.0729
AMTR_s00102p00018040amborella_trichopodaERN0050133.90827.2989cajanus_cajanC.cajan_38534.t77.124262.0915
AMTR_s00102p00018040amborella_trichopodaERN0050172.988563.2184malus_domestica_goldenmRNA:MD03G010550086.394674.8299
AMTR_s00102p00018040amborella_trichopodaERN0050155.172447.8448malus_domestica_goldenmRNA:MD11G011680088.479376.7281
AMTR_s00102p00018040amborella_trichopodaERN0050179.310366.954glycine_maxKRH2510371.13460.0515
AMTR_s00102p00018040amborella_trichopodaERN0050158.189747.5575glycine_maxKRH3056867.275754.9834
AMTR_s00102p00018040amborella_trichopodaERN0050181.752970.8333prunus_dulcisVVA3425972.025362.4051
AMTR_s00102p00018040amborella_trichopodaERN0050179.02365.8046medicago_truncatulaKEH2995570.785158.9447
AMTR_s00102p00018040amborella_trichopodaERN0050175.862161.7816medicago_truncatulaAES8853472.032758.663
AMTR_s00102p00018040amborella_trichopodaERN0050170.97754.8851medicago_truncatulaKEH1978469.284753.5764
AMTR_s00102p00018040amborella_trichopodaERN0050176.867864.2241lupinus_angustifoliusOIW0582974.202561.9972
AMTR_s00102p00018040amborella_trichopodaERN0050176.724163.9368lupinus_angustifoliusOIV9930875.423762.8531
AMTR_s00102p00018040amborella_trichopodaERN0050179.885166.092physcomitrium_patensPp3c13_20200V3.171.649559.2784
AMTR_s00102p00018040amborella_trichopodaERN0050179.885166.092physcomitrium_patensPp3c13_20209V3.471.649559.2784
AMTR_s00102p00018040amborella_trichopodaERN0050136.925328.7356phaseolus_vulgarisESW2086557.623344.843
AMTR_s00102p00018040amborella_trichopodaERN0050117.528714.2241phaseolus_vulgarisESW2086487.142970.7143
AMTR_s00102p00018040amborella_trichopodaERN0050178.017262.7874phaseolus_vulgarisESW0432667.20354.0842
AMTR_s00102p00018040amborella_trichopodaERN0050129.597724.4253pisum_sativumPsat1g136680.1.cds73.571460.7143
AMTR_s00102p00018040amborella_trichopodaERN0050178.879365.5172pisum_sativumPsat7g191720.1.cds69.493757.7215
AMTR_s00102p00018040amborella_trichopodaERN0050178.59264.0805vigna_angularisKOM5064073.620560.0269
AMTR_s00102p00018040amborella_trichopodaERN0050177.155263.0747vigna_unguiculataVigun11g135300.1.v1.267.888755.4994
AMTR_s00102p00018040amborella_trichopodaERN0050177.873665.0862manihot_esculentaOAY3809267.412956.3433
AMTR_s00102p00018040amborella_trichopodaERN0050180.747168.1034solanum_lycopersicumSolyc11g066370.2.170.074859.1022
AMTR_s00102p00018040amborella_trichopodaERN0050181.609269.5402capsicum_annuumPHT6921866.123456.3446
AMTR_s00102p00018040amborella_trichopodaERN0050172.844858.6207vigna_radiataVradi02g06280.161.603949.5747
AMTR_s00102p00018040amborella_trichopodaERN0050182.040269.6839sesamum_indicumSIN_1024085.t72.09661.2374
AMTR_s00102p00018040amborella_trichopodaERN0050161.350654.3103lactuca_sativacds-PLY70545.185.475.6
AMTR_s00102p00018040amborella_trichopodaERN0050112.06910.6322helianthus_annuusmRNA:HanXRQr2_Chr15g068363182.352972.549
AMTR_s00102p00018040amborella_trichopodaERN0050181.034569.9713helianthus_annuusmRNA:HanXRQr2_Chr11g050967171.392461.6456
AMTR_s00102p00018040amborella_trichopodaERN0050180.459867.5287helianthus_annuusmRNA:HanXRQr2_Chr01g003041170.440359.1195
AMTR_s00102p00018040amborella_trichopodaERN0050183.764472.4138ananas_comosusAco007673.1.mrna173.797563.7975
AMTR_s00102p00018040amborella_trichopodaERN0050158.90842.5287caenorhabditis_elegansC29A12.3a.153.040138.2924
AMTR_s00102p00018040amborella_trichopodaERN0050162.787443.8218drosophila_melanogasterFBpp007204158.500740.83
AMTR_s00102p00018040amborella_trichopodaERN0050166.52346.2644homo_sapiensENSP0000026327450.380835.0381
AMTR_s00102p00018040amborella_trichopodaERN0050159.913839.6552saccharomyces_cerevisiaeYDL164C55.231836.5563
AMTR_s00102p00018040amborella_trichopodaERN0050178.59266.6667chenopodium_quinoaAUR62029176-RA:cds75.034363.6488
AMTR_s00102p00018040amborella_trichopodaERN0050175.287460.0575chara_brauniiGBG8737542.845534.1782
AMTR_s00102p00018040amborella_trichopodaERN0050110.20118.33333arabis_alpinaKFK2856278.02263.7363
AMTR_s00102p00018040amborella_trichopodaERN0050154.166741.092arabis_alpinaKFK2968874.066856.1886
AMTR_s00102p00018040amborella_trichopodaERN0050179.166766.6667arabis_alpinaKFK4311874.258862.5337
AMTR_s00102p00018040amborella_trichopodaERN0050156.752941.8103arabis_alpinaKFK4066661.145545.0464
AMTR_s00102p00018040amborella_trichopodaERN0050130.172425.5747corylus_avellanaCav10g08150.t183.00470.3557
AMTR_s00102p00018040amborella_trichopodaERN0050180.172468.8218ipomoea_trilobaitb04g30760.t170.902260.864
AMTR_s00102p00018040amborella_trichopodaERN0050153.59244.1092kalanchoe_fedtschenkoiKaladp0008s0456.1.v1.162.794651.6835
AMTR_s00102p00018040amborella_trichopodaERN005019.051727.32759kalanchoe_fedtschenkoiKaladp0008s0445.1.v1.176.829362.1951
AMTR_s00102p00018040amborella_trichopodaERN0050134.626427.7299kalanchoe_fedtschenkoiKaladp0008s0459.1.v1.179.801363.9073
AMTR_s00102p00018040amborella_trichopodaERN0050133.189725.5747kalanchoe_fedtschenkoiKaladp0622s0007.1.v1.157.178244.0594
AMTR_s00102p00018040amborella_trichopodaERN0050171.120756.7529kalanchoe_fedtschenkoiKaladp0008s0458.1.v1.164.875551.7693
AMTR_s00102p00018040amborella_trichopodaERN0050159.770147.8448kalanchoe_fedtschenkoiKaladp0008s0446.1.v1.160.028948.0519
AMTR_s00102p00018040amborella_trichopodaERN0050162.93143.3908galdieria_sulphurariaEME3028059.109340.7557
AMTR_s00102p00018040amborella_trichopodaERN0050181.034569.6839eucalyptus_grandisKCW5070375.300464.753
AMTR_s00102p00018040amborella_trichopodaERN0050163.936843.3908cyanidioschyzon_merolaeCMK235CT43.287929.3774
AMTR_s00102p00018040amborella_trichopodaERN005017565.2299cynara_cardunculusKVI0018274.678164.9499
AMTR_s00102p00018040amborella_trichopodaERN0050178.017265.0862trifolium_pratenseTp57577_TGAC_v2_mRNA3802672.593660.5615
AMTR_s00102p00018040amborella_trichopodaERN0050121.120717.6724trifolium_pratenseTp57577_TGAC_v2_mRNA332587.573.2143
AMTR_s00102p00018040amborella_trichopodaERN0050143.103436.2069trifolium_pratenseTp57577_TGAC_v2_mRNA3800381.743968.6648
AMTR_s00102p00018040amborella_trichopodaERN0050157.040245.2586trifolium_pratenseTp57577_TGAC_v2_mRNA845375.908260.2294
AMTR_s00102p00018040amborella_trichopodaERN0050179.885167.9598gossypium_raimondiiKJB2038869.154258.8308
AMTR_s00102p00018040amborella_trichopodaERN0050179.741466.092arabidopsis_lyratascaffold_100834.169.987458.0076
AMTR_s00102p00018040amborella_trichopodaERN0050165.948352.2989arabidopsis_lyratafgenesh1_pg.C_scaffold_100361373.4458.24
AMTR_s00102p00018040amborella_trichopodaERN0050167.241456.3218asparagus_officinalisONK7274275.362363.124
AMTR_s00102p00018040amborella_trichopodaERN0050183.47772.7011musa_acuminataMa04_p22700.177.466767.4667
AMTR_s00102p00018040amborella_trichopodaERN0050169.396655.4598arabidopsis_hallerig31443.t172.522557.958
AMTR_s00102p00018040amborella_trichopodaERN0050179.741465.9483arabidopsis_hallerig18284.t175.101562.111
AMTR_s00102p00018040amborella_trichopodaERN0050132.040228.7356corymbia_citriodoracds-KAF8009577.188.142379.0514
AMTR_s00102p00018040amborella_trichopodaERN0050159.482850.2874corymbia_citriodoracds-KAF8009553.165.196955.1181
AMTR_s00102p00018040amborella_trichopodaERN0050180.028767.5287rosa_chinensisPRQ3337969.974959.0452
AMTR_s00102p00018040amborella_trichopodaERN0050177.442566.523juglans_regiacds.Jr14_14990_p172.34962.1477
AMTR_s00102p00018040amborella_trichopodaERN0050181.752969.8276juglans_regiacds.Jr14_14980_p172.576561.9898
AMTR_s00102p00018040amborella_trichopodaERN0050179.02365.9483brassica_oleraceaBo8g112670.168.83657.4468
AMTR_s00102p00018040amborella_trichopodaERN0050178.448365.5172brassica_oleraceaBo01028s020.17058.4615
AMTR_s00102p00018040amborella_trichopodaERN0050164.942546.2644ciona_savignyiENSCSAVP0000000353853.873738.379
AMTR_s00102p00018040amborella_trichopodaERN0050183.189772.4138dioscorea_rotundataDRNTG_10103.176.587366.6667
AMTR_s00102p00018040amborella_trichopodaERN0050180.747168.6782olea_europaeaOE9A051562C464.228654.6286
AMTR_s00102p00018040amborella_trichopodaERN0050180.603469.2529olea_europaeaOE9A117723C266.706357.3127
AMTR_s00102p00018040amborella_trichopodaERN0050181.465570.1149actinidia_chinensisPSR8655370.347460.5459
AMTR_s00102p00018040amborella_trichopodaERN0050182.040270.4023prunus_aviumPav_sc0000467.1_g1060.1.mk:mrna70.755960.7187
AMTR_s00102p00018040amborella_trichopodaERN0050117.672413.5057quercus_subercds-POF07374.158.293844.5498
AMTR_s00102p00018040amborella_trichopodaERN0050180.459868.6782quercus_subercds-POE73794.167.307757.4519
AMTR_s00102p00018040amborella_trichopodaERN0050181.465568.9655nicotiana_attenuataOIT2549873.161361.9355
AMTR_s00102p00018040amborella_trichopodaERN0050182.614969.8276citrus_clementinaESR3769776.259964.4562
AMTR_s00102p00018040amborella_trichopodaERN0050140.948330.7471citrus_clementinaESR6139464.479648.4163
AMTR_s00102p00018040amborella_trichopodaERN0050178.879365.6609brassica_rapa_ro18A06p006080.1_BraROA.171.11459.1969
AMTR_s00102p00018040amborella_trichopodaERN0050179.02365.2299brassica_rapa_ro18A09p080080.1_BraROA.168.7556.75
AMTR_s00102p00018040amborella_trichopodaERN0050178.879366.6667daucus_carotaKZM9552673.395762.0321
AMTR_s00102p00018040amborella_trichopodaERN0050186.206978.1609nymphaea_colorataNC12G0188280.1:cds78.53471.2042
AMTR_s00102p00018040amborella_trichopodaERN0050165.804651.4368ostreococcus_lucimarinusABO9820068.975953.9157
AMTR_s00102p00018040amborella_trichopodaERN0050181.321867.8161coffea_canephoraCDP0703479.718366.4789
AMTR_s00102p00018040amborella_trichopodaERN0050115.660910.9195coffea_canephoraCDP0780660.22141.9889
AMTR_s00102p00018040amborella_trichopodaERN0050134.913830.4598coffea_canephoraCDP1461988.043576.8116
AMTR_s00102p00018040amborella_trichopodaERN0050182.040268.9655pistacia_veracds-EVM0018951.171.19759.8504
AMTR_s00102p00018040amborella_trichopodaERN0050180.459869.2529quercus_lobataQL01p015243:mrna75.06764.6113
AMTR_s00102p00018040amborella_trichopodaERN0050174.56961.2069camelina_sativaCsa17g011580.167.14155.11
AMTR_s00102p00018040amborella_trichopodaERN0050179.310365.6609camelina_sativaCsa14g009580.169.785157.775
AMTR_s00102p00018040amborella_trichopodaERN0050127.011520.8333camelina_sativaCsa10g044870.171.755755.3435
AMTR_s00102p00018040amborella_trichopodaERN0050164.511552.1552camelina_sativaCsa03g011570.156.195245.4318
AMTR_s00102p00018040amborella_trichopodaERN0050176.149464.9425selaginella_moellendorffiiEFJ1478883.072170.8464
AMTR_s00102p00018040amborella_trichopodaERN0050176.005765.0862selaginella_moellendorffiiEFJ2653282.915471.0031
AMTR_s00102p00018040amborella_trichopodaERN0050180.459869.1092vitis_viniferaVitvi06g01341_P00171.611361.509
AMTR_s00102p00018040amborella_trichopodaERN0050179.310366.092eutrema_salsugineumESQ3607769.873458.2278
AMTR_s00102p00018040amborella_trichopodaERN0050167.241452.1552eutrema_salsugineumESQ4717863.847249.5225
AMTR_s00102p00018040amborella_trichopodaERN0050150.862140.2299eutrema_salsugineumESQ4717174.526358.9474
AMTR_s00102p00018040amborella_trichopodaERN0050139.942528.592corchorus_capsularisOMP1173463.90845.7471
AMTR_s00102p00018040amborella_trichopodaERN0050179.02366.3793corchorus_capsularisOMO8287072.655261.0304
AMTR_s00102p00018040amborella_trichopodaERN0050143.965535.3448fraxinus_excelsiorFRAEX38873_v2_000039900.1.cds62.06949.8986
AMTR_s00102p00018040amborella_trichopodaERN0050143.534538.6494fraxinus_excelsiorFRAEX38873_v2_000314090.1.cds89.380579.351
AMTR_s00102p00018040amborella_trichopodaERN0050112.643710.9195fraxinus_excelsiorFRAEX38873_v2_000039890.1.cds83.018971.6981
AMTR_s00102p00018040amborella_trichopodaERN0050130.603425fraxinus_excelsiorFRAEX38873_v2_000314100.1.cds62.831951.3274
AMTR_s00102p00018040amborella_trichopodaERN0050181.034569.2529citrullus_lanatusCla97C02G047630.170.149359.9502

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression