Description

Ensembl ID AMTR_s00077p00038730 Gene ID Accession -
Symbol Alias - Full Name CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687), Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has 709 Blast hits to 643 proteins in 201 species: Archae - 0; Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45; Viruses - 0; Ot /.../karyotes - 254 (source: NCBI BLink).
Status Confidence Length 18440 bases Strand Plus strand
Position AmTr_v1.0_scaffold00077 : 312049 - 330488 RNA binding domain Nop53
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN04113 Nop53 PF07767 7.6e-50 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN04113 1230 409aa ERN04113

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00077p00038730

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00077p00038730amborella_trichopodaERN0411364.058749.8778papaver_somniferumRZC8045169.312253.9683
AMTR_s00077p00038730amborella_trichopodaERN0411364.547749.6333papaver_somniferumRZC5071867.175651.6539
AMTR_s00077p00038730amborella_trichopodaERN0411356.479236.9193marchantia_polymorphaPTQ5008153.596335.0348
AMTR_s00077p00038730amborella_trichopodaERN0411359.413244.7433cannabis_sativa_femalecds.evm.model.02.102767.550.8333
AMTR_s00077p00038730amborella_trichopodaERN0411361.369245.4768ficus_caricaFCD_00009980-RA:cds69.14651.2397
AMTR_s00077p00038730amborella_trichopodaERN0411363.080745.4768ficus_caricaFCD_00015160-RA:cds60.849143.8679
AMTR_s00077p00038730amborella_trichopodaERN0411358.924243.0318beta_vulgarisKMT1887066.944448.8889
AMTR_s00077p00038730amborella_trichopodaERN0411363.325248.8998theobroma_cacaoEOY1762670.958954.7945
AMTR_s00077p00038730amborella_trichopodaERN0411342.787326.6504chlamydomonas_reinhardtiiPNW8124930.434818.9565
AMTR_s00077p00038730amborella_trichopodaERN0411360.391247.4328cucumis_meloMELO3C020109.2.168.802254.039
AMTR_s00077p00038730amborella_trichopodaERN0411357.946242.7873arabidopsis_thalianaAT2G40430.252.78438.9755
AMTR_s00077p00038730amborella_trichopodaERN0411362.836250.8557populus_trichocarpaPotri.008G075700.2.v4.169.272256.0647
AMTR_s00077p00038730amborella_trichopodaERN0411359.902247.1883cucumis_sativusKGN5071468.245153.7604
AMTR_s00077p00038730amborella_trichopodaERN0411354.767740.3423brassica_junceacds.BjuB06g57000S59.259343.6508
AMTR_s00077p00038730amborella_trichopodaERN0411354.767740.0978brassica_napusCDY2390957.435942.0513
AMTR_s00077p00038730amborella_trichopodaERN0411355.501239.6088brassica_napusCDY6618759.736842.6316
AMTR_s00077p00038730amborella_trichopodaERN0411355.745740.5868brassica_napusCDX7998958.461542.5641
AMTR_s00077p00038730amborella_trichopodaERN0411356.234740.0978brassica_napusCDY5293052.511437.4429
AMTR_s00077p00038730amborella_trichopodaERN0411362.836248.4108prunus_persicaONI2474370.994554.6961
AMTR_s00077p00038730amborella_trichopodaERN0411363.325247.9218cajanus_cajanC.cajan_42561.t70.189753.1165
AMTR_s00077p00038730amborella_trichopodaERN0411360.880245.2323malus_domestica_goldenmRNA:MD01G013040068.784551.105
AMTR_s00077p00038730amborella_trichopodaERN0411343.765332.0293malus_domestica_goldenmRNA:MD07G018920063.701146.6192
AMTR_s00077p00038730amborella_trichopodaERN0411361.124746.4548glycine_maxKRH1707369.060852.4862
AMTR_s00077p00038730amborella_trichopodaERN0411362.102747.6773glycine_maxKRH7273170.949754.4693
AMTR_s00077p00038730amborella_trichopodaERN0411363.325248.4108prunus_dulcisVVA1848371.54754.6961
AMTR_s00077p00038730amborella_trichopodaERN0411359.413245.9658medicago_truncatulaAES9969966.393451.3661
AMTR_s00077p00038730amborella_trichopodaERN0411364.303247.4328lupinus_angustifoliusOIW0541863.990347.2019
AMTR_s00077p00038730amborella_trichopodaERN0411353.300734.9633physcomitrium_patensPAC:32904283.CDS.153.041434.7932
AMTR_s00077p00038730amborella_trichopodaERN0411362.836248.4108phaseolus_vulgarisESW1416571.587755.1532
AMTR_s00077p00038730amborella_trichopodaERN0411360.635746.9438pisum_sativumPsat0s1511g0040.1.cds69.080853.4819
AMTR_s00077p00038730amborella_trichopodaERN0411358.924244.2543vigna_angularisKOM4735268.66151.567
AMTR_s00077p00038730amborella_trichopodaERN0411363.325247.6773vigna_unguiculataVigun08g123100.1.v1.272.144854.3175
AMTR_s00077p00038730amborella_trichopodaERN0411364.547751.3447manihot_esculentaOAY4637272.131157.377
AMTR_s00077p00038730amborella_trichopodaERN0411359.902248.1663solanum_lycopersicumSolyc02g068420.3.155.056244.2697
AMTR_s00077p00038730amborella_trichopodaERN0411324.205421.0269capsicum_annuumPHT893037565.1515
AMTR_s00077p00038730amborella_trichopodaERN0411336.185827.6284capsicum_annuumPHT8930460.655746.3115
AMTR_s00077p00038730amborella_trichopodaERN0411358.679744.2543vigna_radiataVradi0153s00480.165.395149.3188
AMTR_s00077p00038730amborella_trichopodaERN0411360.880246.9438sesamum_indicumSIN_1017590.t59.144945.6057
AMTR_s00077p00038730amborella_trichopodaERN0411361.369246.2103lactuca_sativacds-PLY75219.168.206551.3587
AMTR_s00077p00038730amborella_trichopodaERN0411358.924245.2323helianthus_annuusmRNA:HanXRQr2_Chr07g028006167.130951.532
AMTR_s00077p00038730amborella_trichopodaERN0411359.902244.7433helianthus_annuusmRNA:HanXRQr2_Chr10g045506168.435851.1173
AMTR_s00077p00038730amborella_trichopodaERN0411359.413246.4548avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0002417.157.176544.7059
AMTR_s00077p00038730amborella_trichopodaERN0411359.168746.4548avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0002622.156.674544.4965
AMTR_s00077p00038730amborella_trichopodaERN0411358.924246.4548avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0000347.156.440344.4965
AMTR_s00077p00038730amborella_trichopodaERN0411358.924246.4548avena_sativa_sangAVESA.00010b.r2.7AG1194290.1.CDS61.167548.2234
AMTR_s00077p00038730amborella_trichopodaERN0411359.168746.4548avena_sativa_sangAVESA.00010b.r2.1DG0142550.1.CDS61.421348.2234
AMTR_s00077p00038730amborella_trichopodaERN0411359.413246.4548avena_sativa_sangAVESA.00010b.r2.3DG0563250.1.CDS61.675148.2234
AMTR_s00077p00038730amborella_trichopodaERN0411359.902248.4108solanum_tuberosumPGSC0003DMT40002440068.055655
AMTR_s00077p00038730amborella_trichopodaERN0411361.124748.6553solanum_tuberosumPGSC0003DMT40006282869.252155.1247
AMTR_s00077p00038730amborella_trichopodaERN0411358.679745.9658oryza_rufipogonORUFI05G03110.260.453447.3552
AMTR_s00077p00038730amborella_trichopodaERN0411358.924246.4548oryza_brachyanthaOB05G12960.163.756650.2645
AMTR_s00077p00038730amborella_trichopodaERN0411358.924246.2103oryza_glaberrimaORGLA05G0028600.162.597449.0909
AMTR_s00077p00038730amborella_trichopodaERN0411359.168746.2103oryza_punctataOPUNC05G02850.162.532348.8372
AMTR_s00077p00038730amborella_trichopodaERN0411355.990242.5428setaria_italicaKQL1331260.263245.7895
AMTR_s00077p00038730amborella_trichopodaERN0411355.990242.5428setaria_viridisTKW2458860.263245.7895
AMTR_s00077p00038730amborella_trichopodaERN0411359.413245.9658sorghum_bicolorKXG2128663.612649.2147
AMTR_s00077p00038730amborella_trichopodaERN0411358.924243.5208triticum_turgidumTRITD1Av1G032560.456.046541.3953
AMTR_s00077p00038730amborella_trichopodaERN0411359.657744.0098triticum_turgidumTRITD1Bv1G041930.357.009342.0561
AMTR_s00077p00038730amborella_trichopodaERN0411358.190743.5208secale_cerealeSECCE1Rv1G0012780.158.765443.9506
AMTR_s00077p00038730amborella_trichopodaERN0411358.924243.5208triticum_aestivumTraesCS1D02G088100.160.099844.389
AMTR_s00077p00038730amborella_trichopodaERN0411358.924243.5208triticum_aestivumTraesCS1A02G086600.159.950244.2786
AMTR_s00077p00038730amborella_trichopodaERN0411358.924244.0098triticum_aestivumTraesCS1B02G105100.159.213844.226
AMTR_s00077p00038730amborella_trichopodaERN0411356.968244.0098zea_maysZm00001eb417890_P00359.590846.0358
AMTR_s00077p00038730amborella_trichopodaERN0411354.034243.2763ananas_comosusAco007316.1.mrna161.904849.5798
AMTR_s00077p00038730amborella_trichopodaERN0411340.342321.2714caenorhabditis_elegansY39B6A.33.137.671219.863
AMTR_s00077p00038730amborella_trichopodaERN0411339.364319.5599drosophila_melanogasterFBpp007119333.68216.7364
AMTR_s00077p00038730amborella_trichopodaERN0411339.119822.2494homo_sapiensENSP0000024680233.472819.0377
AMTR_s00077p00038730amborella_trichopodaERN0411336.674818.3374saccharomyces_cerevisiaeYPL146C32.96716.4835
AMTR_s00077p00038730amborella_trichopodaERN0411355.012242.7873chenopodium_quinoaAUR62022979-RA:cds61.475447.8142
AMTR_s00077p00038730amborella_trichopodaERN0411353.545235.4523chara_brauniiGBG6725545.815930.3347
AMTR_s00077p00038730amborella_trichopodaERN0411355.012239.8533arabis_alpinaKFK2981562.154745.0276
AMTR_s00077p00038730amborella_trichopodaERN0411363.569750.1222corylus_avellanaCav07g24210.t154.279842.7975
AMTR_s00077p00038730amborella_trichopodaERN0411359.168744.4988brachypodium_distachyonKQK0759261.421346.1929
AMTR_s00077p00038730amborella_trichopodaERN0411358.435245.9658oryza_glumipatulaOGLUM05G03000.162.077948.8312
AMTR_s00077p00038730amborella_trichopodaERN0411350.611238.6308oryza_meridionalisOMERI05G02930.148.820837.2642
AMTR_s00077p00038730amborella_trichopodaERN0411360.391248.4108ipomoea_trilobaitb15g15620.t147.591538.1503
AMTR_s00077p00038730amborella_trichopodaERN0411361.613749.3888ipomoea_trilobaitb12g17120.t169.613355.8011
AMTR_s00077p00038730amborella_trichopodaERN0411348.410837.1638kalanchoe_fedtschenkoiKaladp1077s0004.1.v1.156.571443.4286
AMTR_s00077p00038730amborella_trichopodaERN0411358.435246.4548kalanchoe_fedtschenkoiKaladp0037s0212.1.v1.165.840252.3416
AMTR_s00077p00038730amborella_trichopodaERN0411359.413244.2543triticum_urartuTuG1812G0100001067.01.T0359.413244.2543
AMTR_s00077p00038730amborella_trichopodaERN0411361.369249.6333eucalyptus_grandisKCW5040068.95655.7692
AMTR_s00077p00038730amborella_trichopodaERN0411360.391245.7213cynara_cardunculusKVI0999768.802252.0891
AMTR_s00077p00038730amborella_trichopodaERN0411362.102744.9878trifolium_pratenseTp57577_TGAC_v2_mRNA1521369.780250.5494
AMTR_s00077p00038730amborella_trichopodaERN0411363.080748.4108gossypium_raimondiiKJB7439570.491854.0984
AMTR_s00077p00038730amborella_trichopodaERN0411357.212742.0538arabidopsis_lyratascaffold_402835.154.166739.8148
AMTR_s00077p00038730amborella_trichopodaERN0411359.657744.4988hordeum_vulgareHORVU.MOREX.r3.1HG0019380.160.39645.0495
AMTR_s00077p00038730amborella_trichopodaERN0411349.877838.3863oryza_barthiiOBART05G02990.158.285744.8571
AMTR_s00077p00038730amborella_trichopodaERN0411352.322740.8313asparagus_officinalisONK7857363.313649.4083
AMTR_s00077p00038730amborella_trichopodaERN0411361.613747.6773musa_acuminataMa11_p23920.268.478352.9891
AMTR_s00077p00038730amborella_trichopodaERN0411360.391248.4108musa_acuminataMa03_p25030.167.302553.951
AMTR_s00077p00038730amborella_trichopodaERN0411356.968242.0538arabidopsis_hallerig12630.t153.440439.4495
AMTR_s00077p00038730amborella_trichopodaERN0411359.413245.7213eragrostis_tefEt_9B_065209.CDS59.705245.9459
AMTR_s00077p00038730amborella_trichopodaERN0411360.635747.1883eragrostis_tefEt_9A_063452.CDS56.363643.8636
AMTR_s00077p00038730amborella_trichopodaERN0411362.591749.8778corymbia_citriodoracds-KAF8009841.171.309256.8245
AMTR_s00077p00038730amborella_trichopodaERN0411362.102748.1663rosa_chinensisPRQ5955769.972554.27
AMTR_s00077p00038730amborella_trichopodaERN0411361.124746.9438juglans_regiacds.Jr12_24970_p168.681352.7473
AMTR_s00077p00038730amborella_trichopodaERN0411319.559916.1369saccharum_spontaneumSspon.07G0011490-3D-mRNA-1:cds81.632767.3469
AMTR_s00077p00038730amborella_trichopodaERN0411358.924244.0098triticum_dicoccoidesTRIDC1BG015200.156.572842.2535
AMTR_s00077p00038730amborella_trichopodaERN0411358.924243.5208triticum_dicoccoidesTRIDC1AG012320.156.705941.8824
AMTR_s00077p00038730amborella_trichopodaERN0411354.767740.3423brassica_oleraceaBo4g012550.153.846239.6635
AMTR_s00077p00038730amborella_trichopodaERN0411338.386326.4059brassica_oleraceaBo3g103560.151.307235.2941
AMTR_s00077p00038730amborella_trichopodaERN0411355.256739.8533brassica_oleraceaBo4g190120.159.317642.7822
AMTR_s00077p00038730amborella_trichopodaERN0411343.031829.5844brassica_oleraceaBo5g008980.153.822637.0031
AMTR_s00077p00038730amborella_trichopodaERN0411358.924246.4548oryza_indicaBGIOSGA018823-PA60.2547.5
AMTR_s00077p00038730amborella_trichopodaERN0411335.941320.5379ciona_savignyiENSCSAVP0000001018036.117920.6388
AMTR_s00077p00038730amborella_trichopodaERN0411359.413245.7213dioscorea_rotundataDRNTG_07865.167.551.9444
AMTR_s00077p00038730amborella_trichopodaERN0411358.679746.4548leersia_perrieriLPERR05G02780.162.176249.2228
AMTR_s00077p00038730amborella_trichopodaERN0411361.613748.1663olea_europaeaOE9A015978C169.041153.9726
AMTR_s00077p00038730amborella_trichopodaERN0411349.633339.6088olea_europaeaOE9A090206C167.441953.8206
AMTR_s00077p00038730amborella_trichopodaERN0411348.899836.6748olea_europaeaOE9A013984C166.445249.8339
AMTR_s00077p00038730amborella_trichopodaERN0411364.792250.8557actinidia_chinensisPSS3442873.204457.4586
AMTR_s00077p00038730amborella_trichopodaERN0411364.792251.5892actinidia_chinensisPSS3250073.204458.2873
AMTR_s00077p00038730amborella_trichopodaERN0411357.212744.0098prunus_aviumPav_sc0001205.1_g210.1.mk:mrna69.850753.7313
AMTR_s00077p00038730amborella_trichopodaERN0411360.880246.9438quercus_subercds-POE78224.168.59552.8926
AMTR_s00077p00038730amborella_trichopodaERN0411362.102748.4108quercus_subercds-POF17429.170.555655
AMTR_s00077p00038730amborella_trichopodaERN0411361.613750.1222nicotiana_attenuataOIS9877470.19557.1031
AMTR_s00077p00038730amborella_trichopodaERN0411363.325248.6553citrus_clementinaESR4909671.153854.6703
AMTR_s00077p00038730amborella_trichopodaERN0411355.501240.0978brassica_rapa_ro18A04p036540.1_BraROA.159.580143.0446
AMTR_s00077p00038730amborella_trichopodaERN0411357.946241.5648brassica_rapa_ro18A05p002860.1_BraROA.144.548931.9549
AMTR_s00077p00038730amborella_trichopodaERN0411365.281249.1443daucus_carotaKZN0313666.583550.1247
AMTR_s00077p00038730amborella_trichopodaERN0411362.591747.6773nymphaea_colorataNC9G0146510.1:cds60.235345.8824
AMTR_s00077p00038730amborella_trichopodaERN0411338.630821.7604ostreococcus_lucimarinusABO9537737.176520.9412
AMTR_s00077p00038730amborella_trichopodaERN0411363.080750.6112coffea_canephoraCDP1394070.879156.8681
AMTR_s00077p00038730amborella_trichopodaERN0411358.679743.2763aegilops_tauschiiAET1Gv20214300.359.701544.0299
AMTR_s00077p00038730amborella_trichopodaERN0411365.036751.1002pistacia_veracds-EVM0011879.173.076957.4176
AMTR_s00077p00038730amborella_trichopodaERN0411365.036751.1002pistacia_veracds-EVM0023108.173.076957.4176
AMTR_s00077p00038730amborella_trichopodaERN0411351.833738.1418digitaria_exilisDexi3B01G0011190.1:cds60.571444.5714
AMTR_s00077p00038730amborella_trichopodaERN0411356.723743.2763digitaria_exilisDexi3A01G0011060.1:cds57.568243.9206
AMTR_s00077p00038730amborella_trichopodaERN0411358.679745.7213oryza_sativaOs05t0144200-0162.337748.5714
AMTR_s00077p00038730amborella_trichopodaERN0411357.701744.0098panicum_halliiPUZ639975945
AMTR_s00077p00038730amborella_trichopodaERN0411362.591748.4108quercus_lobataQL08p064289:mrna70.914154.8476
AMTR_s00077p00038730amborella_trichopodaERN0411358.190743.7653camelina_sativaCsa06g044820.164.324348.3784
AMTR_s00077p00038730amborella_trichopodaERN0411357.212743.0318camelina_sativaCsa05g012320.158.064543.6725
AMTR_s00077p00038730amborella_trichopodaERN0411343.031831.2958camelina_sativaCsa04g054760.156.591641.1576
AMTR_s00077p00038730amborella_trichopodaERN0411363.569750.6112vitis_viniferaVitvi13g00136_P00171.428656.8681
AMTR_s00077p00038730amborella_trichopodaERN0411357.701742.2983eutrema_salsugineumESQ5275364.835247.5275
AMTR_s00077p00038730amborella_trichopodaERN0411358.190744.9878echinochloa_crusgalliscaffold116.139.cds61.182547.3008
AMTR_s00077p00038730amborella_trichopodaERN0411357.946244.9878echinochloa_crusgalliscaffold242.36.cds59.697746.3476
AMTR_s00077p00038730amborella_trichopodaERN0411359.168744.2543echinochloa_crusgalliscaffold13.302.cds55.504641.5138
AMTR_s00077p00038730amborella_trichopodaERN0411359.168745.2323fraxinus_excelsiorFRAEX38873_v2_000094720.1.cds69.942253.4682
AMTR_s00077p00038730amborella_trichopodaERN0411357.457243.0318fraxinus_excelsiorFRAEX38873_v2_000136260.3.cds66.761450
AMTR_s00077p00038730amborella_trichopodaERN0411359.657746.9438citrullus_lanatusCla97C06G119510.168.347353.7815
AMTR_s00077p00038730amborella_trichopodaERN0411359.168746.6993citrullus_lanatusCla97C07G133240.166.301452.3288
AMTR_s00077p00038730amborella_trichopodaERN0411358.679746.2103oryza_nivaraONIVA05G02900.262.663249.3473

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression