Description

Ensembl ID AMTR_s00069p00051250 Gene ID Accession -
Symbol Alias - Full Name 3'-5' exonuclease domain-containing protein
Status Confidence Length 11245 bases Strand Minus strand
Position AmTr_v1.0_scaffold00069 : 483295 - 494539 RNA binding domain DNA_pol_A_exo1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN19308 DNA_pol_A_exo1 PF01612 2.2e-20 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN19308 1611 536aa ERN19308

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00069p00051250amborella_trichopodaERN1537326.719615.0794amborella_trichopodaERN1930818.843310.6343
AMTR_s00069p00051250amborella_trichopodaERM9357517.15798.94737amborella_trichopodaERN1930830.410415.8582
AMTR_s00069p00051250amborella_trichopodaERN1737418.32999.5723amborella_trichopodaERN1930833.582117.5373

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00069p00051250amborella_trichopodaERN1930869.589655.0373papaver_somniferumRZC7090071.183256.2977
AMTR_s00069p00051250amborella_trichopodaERN1930837.126929.4776papaver_somniferumRZC5648767.229753.3784
AMTR_s00069p00051250amborella_trichopodaERN1930844.962733.5821marchantia_polymorphaPTQ2986736.515227.2727
AMTR_s00069p00051250amborella_trichopodaERN1930867.723951.8657cannabis_sativa_femalecds.evm.model.05.17168.105152.1576
AMTR_s00069p00051250amborella_trichopodaERN1930846.641834.7015ficus_caricaFCD_00009752-RA:cds63.938647.5703
AMTR_s00069p00051250amborella_trichopodaERN1930865.671649.2537beta_vulgarisKMT1596566.041349.531
AMTR_s00069p00051250amborella_trichopodaERN1930863.246347.7612theobroma_cacaoEOY2361666.732350.3937
AMTR_s00069p00051250amborella_trichopodaERN1930863.80650.1866cucumis_meloMELO3C019378.2.165.39251.434
AMTR_s00069p00051250amborella_trichopodaERN1930862.686645.5224arabidopsis_thalianaAT5G24340.265.116347.2868
AMTR_s00069p00051250amborella_trichopodaERN1930864.925448.3209populus_trichocarpaPotri.015G009500.1.v4.166.794649.7121
AMTR_s00069p00051250amborella_trichopodaERN1930864.738850.9328cucumis_sativusKGN5765066.221452.0992
AMTR_s00069p00051250amborella_trichopodaERN1930864.738847.5746brassica_junceacds.BjuA02g03530S69.451
AMTR_s00069p00051250amborella_trichopodaERN1930848.320936.9403brassica_junceacds.BjuB04g51130S54.872941.9492
AMTR_s00069p00051250amborella_trichopodaERN1930864.925447.3881brassica_napusCDY6569969.739550.9018
AMTR_s00069p00051250amborella_trichopodaERN1930864.738847.5746brassica_napusCDY6310169.451
AMTR_s00069p00051250amborella_trichopodaERN1930829.477622.9478brassica_napusCDY0543275.598158.8517
AMTR_s00069p00051250amborella_trichopodaERN1930816.044811.7537brassica_napusCDY6309667.187549.2188
AMTR_s00069p00051250amborella_trichopodaERN1930868.656753.1716prunus_persicaONI2568471.042555.0193
AMTR_s00069p00051250amborella_trichopodaERN1930863.992547.2015cajanus_cajanC.cajan_10090.t66.992249.4141
AMTR_s00069p00051250amborella_trichopodaERN1930866.044851.1194malus_domestica_goldenmRNA:MD07G024640066.168251.215
AMTR_s00069p00051250amborella_trichopodaERN1930862.546.6418glycine_maxKRH1872366.205549.4071
AMTR_s00069p00051250amborella_trichopodaERN1930862.873147.0149glycine_maxKRH1634766.732749.901
AMTR_s00069p00051250amborella_trichopodaERN1930868.656753.3582prunus_dulcisVVA1133770.905655.106
AMTR_s00069p00051250amborella_trichopodaERN1930854.477640.2985lupinus_angustifoliusOIW1658067.749450.116
AMTR_s00069p00051250amborella_trichopodaERN1930842.910430.597physcomitrium_patensPp3c11_25950V3.124.546417.5027
AMTR_s00069p00051250amborella_trichopodaERN1930861.567245.8955phaseolus_vulgarisESW3349565.476248.8095
AMTR_s00069p00051250amborella_trichopodaERN1930865.111948.1343pisum_sativumPsat6g035960.2.cds67.115449.6154
AMTR_s00069p00051250amborella_trichopodaERN1930814.925411.0075vigna_angularisKOM4835466.115748.7603
AMTR_s00069p00051250amborella_trichopodaERN1930861.567245.8955vigna_unguiculataVigun08g079800.1.v1.265.476248.8095
AMTR_s00069p00051250amborella_trichopodaERN1930869.216453.1716manihot_esculentaOAY5953970.801554.3893
AMTR_s00069p00051250amborella_trichopodaERN1930863.992548.1343solanum_lycopersicumSolyc03g082850.3.166.731550.1946
AMTR_s00069p00051250amborella_trichopodaERN1930863.80647.9478capsicum_annuumPHT8754363.450847.6809
AMTR_s00069p00051250amborella_trichopodaERN1930827.238820.1493vigna_radiataVradi06g09050.173.366854.2714
AMTR_s00069p00051250amborella_trichopodaERN1930863.246349.4403sesamum_indicumSIN_1005859.t65.44451.1583
AMTR_s00069p00051250amborella_trichopodaERN1930867.164251.1194lactuca_sativacds-PLY68493.167.924551.6981
AMTR_s00069p00051250amborella_trichopodaERN1930867.164249.6269helianthus_annuusmRNA:HanXRQr2_Chr14g067072169.767451.5504
AMTR_s00069p00051250amborella_trichopodaERN1930858.582141.4179avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0001221.262.549844.2231
AMTR_s00069p00051250amborella_trichopodaERN1930847.574633.209avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0000371.258.891541.1085
AMTR_s00069p00051250amborella_trichopodaERN1930858.955241.6045avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0002936.262.327443.9842
AMTR_s00069p00051250amborella_trichopodaERN1930856.343340.8582lolium_perennecds.KYUSt_chr2.2539663.983146.3983
AMTR_s00069p00051250amborella_trichopodaERN1930840.111931.1567oryza_longistaminataKN539603.1_FGP00570.723754.9342
AMTR_s00069p00051250amborella_trichopodaERN1930858.955241.6045avena_sativa_sangAVESA.00010b.r2.2DG0344950.1.CDS64.227645.3252
AMTR_s00069p00051250amborella_trichopodaERN1930858.955241.6045avena_sativa_sangAVESA.00010b.r2.2AG0204500.1.CDS64.227645.3252
AMTR_s00069p00051250amborella_trichopodaERN1930858.582141.4179avena_sativa_sangAVESA.00010b.r2.2CG0286580.2.CDS63.821145.122
AMTR_s00069p00051250amborella_trichopodaERN1930865.671649.4403solanum_tuberosumPGSC0003DMT40004770768.61651.6569
AMTR_s00069p00051250amborella_trichopodaERN1930861.567244.403oryza_rufipogonORUFI07G13120.165.868347.505
AMTR_s00069p00051250amborella_trichopodaERN1930857.462741.791oryza_brachyanthaOB07G19170.167.396149.0153
AMTR_s00069p00051250amborella_trichopodaERN1930819.962712.3134oryza_glaberrimaORGLA07G0235200.159.11636.4641
AMTR_s00069p00051250amborella_trichopodaERN1930834.514926.306oryza_glaberrimaORGLA07G0235100.159.677445.4839
AMTR_s00069p00051250amborella_trichopodaERN1930861.19444.5896oryza_punctataOPUNC07G11600.265.99648.0885
AMTR_s00069p00051250amborella_trichopodaERN1930859.141843.4701setaria_italicaKQL2345662.772346.1386
AMTR_s00069p00051250amborella_trichopodaERN1930860.634344.5896setaria_viridisTKW3175564.102647.14
AMTR_s00069p00051250amborella_trichopodaERN1930859.888144.7761sorghum_bicolorEER9844163.564447.5248
AMTR_s00069p00051250amborella_trichopodaERN1930858.582141.4179triticum_turgidumTRITD6Bv1G183770.460.73542.94
AMTR_s00069p00051250amborella_trichopodaERN1930858.768741.2313triticum_turgidumTRITD6Av1G192620.463.126344.2886
AMTR_s00069p00051250amborella_trichopodaERN1930859.701541.791secale_cerealeSECCE6Rv1G0408470.165.306145.7143
AMTR_s00069p00051250amborella_trichopodaERN1930856.529940.6716triticum_aestivumTraesCS6B02G344200.163.92445.9916
AMTR_s00069p00051250amborella_trichopodaERN1930858.582141.4179triticum_aestivumTraesCS6D02G293500.262.844.4
AMTR_s00069p00051250amborella_trichopodaERN1930859.141841.9776triticum_aestivumTraesCS6A02G314200.164.562145.8248
AMTR_s00069p00051250amborella_trichopodaERN1930860.074644.403zea_maysZm00001eb096690_P00463.888947.2222
AMTR_s00069p00051250amborella_trichopodaERN1930864.738848.5075ananas_comosusAco008930.1.mrna165.595549.1493
AMTR_s00069p00051250amborella_trichopodaERN1930819.02997.83582caenorhabditis_elegansY57A10A.13.114.36625.91549
AMTR_s00069p00051250amborella_trichopodaERN1930858.20945.1493chenopodium_quinoaAUR62035569-RA:cds63.157948.9879
AMTR_s00069p00051250amborella_trichopodaERN1930843.470129.291chara_brauniiGBG9091414.37389.68538
AMTR_s00069p00051250amborella_trichopodaERN1930816.79111.0075corylus_avellanaCav01g02560.t1.cds164.285742.1429
AMTR_s00069p00051250amborella_trichopodaERN1930839.179127.6119brachypodium_distachyonKQK1643058.988841.573
AMTR_s00069p00051250amborella_trichopodaERN1930861.567244.5896oryza_glumipatulaOGLUM01G07150.165.868347.7046
AMTR_s00069p00051250amborella_trichopodaERN1930852.798537.3134oryza_meridionalisOMERI07G10230.163.31144.7427
AMTR_s00069p00051250amborella_trichopodaERN1930865.298549.4403ipomoea_trilobaitb05g20240.t157.851243.8017
AMTR_s00069p00051250amborella_trichopodaERN1930858.768746.8284kalanchoe_fedtschenkoiKaladp0067s0158.1.v1.1.CDS.164.681751.54
AMTR_s00069p00051250amborella_trichopodaERN1930859.141841.791triticum_urartuTuG1812G0600003379.01.T0164.562145.6212
AMTR_s00069p00051250amborella_trichopodaERN1930866.977652.0522eucalyptus_grandisKCW8912469.439153.9652
AMTR_s00069p00051250amborella_trichopodaERN1930866.79149.8134cynara_cardunculusKVI1021570.058752.2505
AMTR_s00069p00051250amborella_trichopodaERN1930864.552247.7612trifolium_pratenseTp57577_TGAC_v2_mRNA2538067.578150
AMTR_s00069p00051250amborella_trichopodaERN1930864.925450.5597gossypium_raimondiiKJB3738068.235353.1373
AMTR_s00069p00051250amborella_trichopodaERN1930865.111947.2015arabidopsis_lyratafgenesh2_kg.6__2432__AT5G24340.168.700849.8032
AMTR_s00069p00051250amborella_trichopodaERN1930859.328441.791hordeum_vulgareHORVU.MOREX.r3.6HG0616550.163.095244.4444
AMTR_s00069p00051250amborella_trichopodaERN1930861.567244.403oryza_barthiiOBART07G13000.165.868347.505
AMTR_s00069p00051250amborella_trichopodaERN1930865.298549.2537asparagus_officinalisONK5670666.162649.9055
AMTR_s00069p00051250amborella_trichopodaERN1930863.246348.5075musa_acuminataMa05_p22380.167.128751.4851
AMTR_s00069p00051250amborella_trichopodaERN1930861.007544.7761eragrostis_tefEt_5A_040878.CDS65.448
AMTR_s00069p00051250amborella_trichopodaERN1930861.007544.403eragrostis_tefEt_5B_043549.CDS65.927447.9839
AMTR_s00069p00051250amborella_trichopodaERN1930867.164252.4254corymbia_citriodoracds-KAF8042840.168.702353.626
AMTR_s00069p00051250amborella_trichopodaERN1930867.164251.6791rosa_chinensisPRQ6048570.588254.3137
AMTR_s00069p00051250amborella_trichopodaERN1930862.686647.7612juglans_regiacds.Jr16_05550_p164.244748.9484
AMTR_s00069p00051250amborella_trichopodaERN1930864.365748.5075juglans_regiacds.Jr16_05530_p162.613447.1869
AMTR_s00069p00051250amborella_trichopodaERN1930864.365748.694juglans_regiacds.Jr16_05540_p165.589449.6198
AMTR_s00069p00051250amborella_trichopodaERN1930827.425419.5896saccharum_spontaneumSspon.02G0019700-1A-mRNA-145.794432.7103
AMTR_s00069p00051250amborella_trichopodaERN1930835.447825.5597saccharum_spontaneumSspon.02G0019700-2B-mRNA-156.379840.6528
AMTR_s00069p00051250amborella_trichopodaERN1930814.55229.51493saccharum_spontaneumSspon.02G0019670-2C-mRNA-1.cds15032.6923
AMTR_s00069p00051250amborella_trichopodaERN1930836.567225.9328saccharum_spontaneumSspon.02G0019670-1A-mRNA-158.333341.369
AMTR_s00069p00051250amborella_trichopodaERN1930856.90340.6716triticum_dicoccoidesTRIDC6BG055020.367.180648.0176
AMTR_s00069p00051250amborella_trichopodaERN1930859.141841.4179triticum_dicoccoidesTRIDC6AG047250.264.562145.2138
AMTR_s00069p00051250amborella_trichopodaERN1930864.738847.7612brassica_oleraceaBo2g159510.169.539151.3026
AMTR_s00069p00051250amborella_trichopodaERN1930826.119418.6567brassica_oleraceaBo2g159390.124.866817.762
AMTR_s00069p00051250amborella_trichopodaERN1930861.567244.5896oryza_indicaBGIOSGA025625-PA65.868347.7046
AMTR_s00069p00051250amborella_trichopodaERN1930851.679139.9254dioscorea_rotundataDRNTG_22007.169.423653.6341
AMTR_s00069p00051250amborella_trichopodaERN1930860.447844.0299leersia_perrieriLPERR07G10950.165.322647.5806
AMTR_s00069p00051250amborella_trichopodaERN1930865.111949.6269olea_europaeaOE9A003769C140.723531.0385
AMTR_s00069p00051250amborella_trichopodaERN1930867.350752.0522actinidia_chinensisPSS3297869.556853.7572
AMTR_s00069p00051250amborella_trichopodaERN1930866.417950.1866prunus_aviumPav_sc0000138.1_g1050.1.mk:mrna37.751928.526
AMTR_s00069p00051250amborella_trichopodaERN1930864.365748.694quercus_subercds-POE55340.166.346250.1923
AMTR_s00069p00051250amborella_trichopodaERN1930817.350714.1791nicotiana_attenuataOIT1887177.563.3333
AMTR_s00069p00051250amborella_trichopodaERN1930865.298549.8134nicotiana_attenuataOIT2194667.567651.5444
AMTR_s00069p00051250amborella_trichopodaERN1930855.410441.791citrus_clementinaESR5439767.550.9091
AMTR_s00069p00051250amborella_trichopodaERN1930864.925448.1343brassica_rapa_ro18A02p056140.1_BraROA.168.774750.9881
AMTR_s00069p00051250amborella_trichopodaERN1930816.604512.3134brassica_rapa_ro18A02g512490.1_BraROA.143.842432.5123
AMTR_s00069p00051250amborella_trichopodaERN1930866.044849.4403daucus_carotaKZM9808770.238152.5794
AMTR_s00069p00051250amborella_trichopodaERN1930829.104523.1343daucus_carotaKZN0183265.546252.1008
AMTR_s00069p00051250amborella_trichopodaERN1930867.723953.7313nymphaea_colorataNC9G0273440.1:cds67.346953.4323
AMTR_s00069p00051250amborella_trichopodaERN1930821.641814.5522coffea_canephoraCDP1628660.73340.8377
AMTR_s00069p00051250amborella_trichopodaERN1930858.768746.0821coffea_canephoraCDP0502866.037751.782
AMTR_s00069p00051250amborella_trichopodaERN1930858.955241.6045aegilops_tauschiiAET6Gv20774500.164.227645.3252
AMTR_s00069p00051250amborella_trichopodaERN1930865.671650.1866pistacia_veracds-EVM0014452.264.944649.631
AMTR_s00069p00051250amborella_trichopodaERN1930858.022443.6567digitaria_exilisDexi2B01G0010740.1:cds64.389248.4472
AMTR_s00069p00051250amborella_trichopodaERN1930858.395543.4701digitaria_exilisDexi2A01G0011370.1:cds64.803348.2402
AMTR_s00069p00051250amborella_trichopodaERN1930861.567244.403oryza_sativaOs07t0452400-0165.868347.505
AMTR_s00069p00051250amborella_trichopodaERN1930860.820945.1493panicum_halliiPUZ6946665.330748.497
AMTR_s00069p00051250amborella_trichopodaERN1930861.007545.3358panicum_halliiPUZ4937965.531148.6974
AMTR_s00069p00051250amborella_trichopodaERN1930866.044849.8134quercus_lobataQL09p007776:mrna67.557350.9542
AMTR_s00069p00051250amborella_trichopodaERN1930859.701544.0299eragrostis_curvulaTVU3955865.306148.1633
AMTR_s00069p00051250amborella_trichopodaERN1930852.985138.806eragrostis_curvulaTVU3959968.433750.1205
AMTR_s00069p00051250amborella_trichopodaERN1930865.298547.2015camelina_sativaCsa20g040760.168.493149.5108
AMTR_s00069p00051250amborella_trichopodaERN1930864.738847.7612camelina_sativaCsa13g029020.168.172950.2947
AMTR_s00069p00051250amborella_trichopodaERN1930864.738847.5746camelina_sativaCsa08g018780.167.906149.9022
AMTR_s00069p00051250amborella_trichopodaERN1930841.79131.7164selaginella_moellendorffiiEFJ1343850.678738.4615
AMTR_s00069p00051250amborella_trichopodaERN1930844.589632.4627selaginella_moellendorffiiEFJ1185029.987521.8319
AMTR_s00069p00051250amborella_trichopodaERN1930865.298549.6269vitis_viniferaVitvi16g01386_P00268.226151.8519
AMTR_s00069p00051250amborella_trichopodaERN1930864.738847.7612eutrema_salsugineumESQ3197868.441850.4931
AMTR_s00069p00051250amborella_trichopodaERN1930860.447844.0299echinochloa_crusgalliscaffold34.753.cds64.413546.9185
AMTR_s00069p00051250amborella_trichopodaERN1930860.261243.8433echinochloa_crusgalliscaffold12.673.cds63.960446.5347
AMTR_s00069p00051250amborella_trichopodaERN1930859.701543.8433echinochloa_crusgalliscaffold3.446.cds64.516147.379
AMTR_s00069p00051250amborella_trichopodaERN1930863.992550.1866corchorus_capsularisOMO8791367.652953.0572
AMTR_s00069p00051250amborella_trichopodaERN1930864.179148.5075fraxinus_excelsiorFRAEX38873_v2_000058380.1.cds63.703748.1481
AMTR_s00069p00051250amborella_trichopodaERN1930838.432830.7836citrullus_lanatusCla97C05G091420.170.547956.5069
AMTR_s00069p00051250amborella_trichopodaERN1930861.380644.403oryza_nivaraONIVA07G10740.165.668747.505

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression