| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | AMTR_s00068p00181410 | Gene ID |
|
Accession |
- |
| Symbol |
|
Alias |
- |
Full Name |
DNA-directed RNA polymerase family protein |
| Status |
Confidence |
Length |
10911 bases |
Strand |
Plus strand |
| Position |
AmTr_v1.0_scaffold00068 : 3055056 - 3065966 |
RNA binding domain |
RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ERN20505 |
RNA_pol_Rpb2_1 |
PF04563 |
3e-75 |
1 |
| ERN20505 |
RNA_pol_Rpb2_3 |
PF04565 |
5.4e-26 |
2 |
| ERN20505 |
RNA_pol_Rpb2_7 |
PF04560 |
1e-36 |
3 |
| ERN20505 |
RNA_pol_Rpb2_2 |
PF04561 |
1.1e-56 |
4 |
| ERN20505 |
RNA_pol_Rpb2_6 |
PF00562 |
1.2e-126 |
5 |
| ERN20505 |
RNA_pol_Rpb2_4 |
PF04566 |
7.8e-22 |
6 |
| ERN20505 |
RNA_pol_Rpb2_5 |
PF04567 |
2.3e-16 |
7 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
ERN20505 |
3573 |
1190aa |
ERN20505 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20504 | 91.0615 | 79.8883 | amborella_trichopoda | ERN20505 | 13.6975 | 12.0168 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20503 | 71.6814 | 61.0619 | amborella_trichopoda | ERN20505 | 13.6134 | 11.5966 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN05960 | 43.5 | 26 | amborella_trichopoda | ERN20505 | 7.31092 | 4.36975 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN00559 | 37.6106 | 22.1239 | amborella_trichopoda | ERN20505 | 14.2857 | 8.40336 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERM98365 | 30.7692 | 18.5185 | amborella_trichopoda | ERN20505 | 9.07563 | 5.46218 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERM98367 | 36.2035 | 21.5264 | amborella_trichopoda | ERN20505 | 15.5462 | 9.2437 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN11930 | 51.6447 | 33.3882 | amborella_trichopoda | ERN20505 | 26.3866 | 17.0588 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20502 | 75.6032 | 67.2922 | amborella_trichopoda | ERN20505 | 23.6975 | 21.0924 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN11927 | 60.7038 | 43.4018 | amborella_trichopoda | ERN20505 | 17.395 | 12.437 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN11932 | 44.3925 | 28.5047 | amborella_trichopoda | ERN20505 | 7.98319 | 5.12605 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN04734 | 44.086 | 31.7972 | amborella_trichopoda | ERN20505 | 24.1176 | 17.395 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERM94369 | 50.2048 | 32.0229 | amborella_trichopoda | ERN20505 | 51.5126 | 32.8571 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 71.2605 | 56.7227 | chondrus_crispus | CDF38132 | 74.386 | 59.2105 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 85.7983 | 79.3277 | papaver_somniferum | RZC63509 | 91.0794 | 84.2105 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 82.1008 | 75.7143 | papaver_somniferum | RZC47461 | 87.4664 | 80.6625 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 77.8992 | 63.9496 | chlamydomonas_reinhardtii | PNW86155 | 57.3639 | 47.0916 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 94.2017 | 88.6555 | physcomitrium_patens | Pp3c2_10910V3.2 | 94.5992 | 89.0295 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 90.6723 | 85.2101 | solanum_lycopersicum | Solyc12g010600.2.1 | 87.5812 | 82.3052 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 12.605 | 12.1008 | capsicum_annuum | PHT73115 | 90.9091 | 87.2727 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.4622 | 89.6639 | sesamum_indicum | SIN_1016820.t | 94.0397 | 88.3278 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3025 | 91.7647 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.7Cg0001274.2 | 93.6274 | 89.2157 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3025 | 91.7647 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.4Ag0001040.2 | 93.6274 | 89.2157 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3025 | 91.6807 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.4Dg0001400.1 | 93.6274 | 89.134 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3025 | 91.6807 | lolium_perenne | cds.KYUSt_chr4.16807 | 71.313 | 67.8905 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.0504 | 92.1849 | oryza_longistaminata | KN538972.1_FGP012 | 93.3061 | 89.551 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 70.5882 | 67.8992 | avena_sativa_sang | AVESA.00010b.r2.UnG1404330.1.CDS | 97.6744 | 93.9535 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3025 | 91.6807 | avena_sativa_sang | AVESA.00010b.r2.4DG0742190.1.CDS | 93.6274 | 89.134 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 89.0756 | 85.1261 | avena_sativa_sang | AVESA.00010b.r2.7CG0693540.1.CDS | 97.0696 | 92.7656 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 17.8151 | 16.6387 | solanum_tuberosum | PGSC0003DMT400020369 | 92.9825 | 86.8421 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 94.958 | 91.2605 | oryza_rufipogon | ORUFI03G28650.1 | 94.01 | 90.3494 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3866 | 92.605 | oryza_brachyantha | OB03G35300.1 | 93.1006 | 89.4481 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3866 | 92.605 | oryza_glaberrima | ORGLA03G0256300.1 | 93.8625 | 90.18 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 89.1597 | 85.8824 | oryza_punctata | OPUNC03G25150.2 | 97.1612 | 93.5897 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.4706 | 92.1008 | setaria_italica | KQK87931 | 93.6378 | 89.3964 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.4706 | 92.1008 | setaria_viridis | TKV92299 | 93.4853 | 89.2508 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.8824 | 91.3445 | sorghum_bicolor | KXG37943 | 92.5385 | 88.159 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.8824 | 91.9328 | triticum_turgidum | TRITD5Bv1G192360.3 | 93.448 | 89.5987 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.8824 | 91.9328 | triticum_turgidum | TRITD5Av1G198880.3 | 93.448 | 89.5987 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.8824 | 91.9328 | secale_cereale | SECCE5Rv1G0350920.1 | 93.448 | 89.5987 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.8824 | 91.9328 | triticum_aestivum | TraesCS5B02G376200.2 | 93.448 | 89.5987 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.8824 | 91.9328 | triticum_aestivum | TraesCS5D02G383900.2 | 93.448 | 89.5987 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.8824 | 91.9328 | triticum_aestivum | TraesCS5A02G374300.2 | 93.448 | 89.5987 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.0504 | 91.5966 | zea_mays | Zm00001eb218650_P001 | 93.0024 | 88.69 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.9664 | 91.5126 | zea_mays | Zm00001eb050350_P001 | 92.5446 | 88.2496 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.8067 | 93.1092 | ananas_comosus | Aco014603.1.mrna1 | 97.0514 | 93.3446 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 76.4706 | 62.437 | caenorhabditis_elegans | C26E6.4.1 | 76.2144 | 62.2278 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 77.8151 | 64.2857 | drosophila_melanogaster | FBpp0310926 | 78.7415 | 65.051 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 78.8235 | 65.8824 | homo_sapiens | ENSP00000312735 | 79.8978 | 66.7802 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 77.8992 | 61.7647 | saccharomyces_cerevisiae | YOR151C | 75.7353 | 60.049 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 82.605 | 76.1345 | chara_braunii | GBG89761 | 92.7358 | 85.4717 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 87.9832 | 76.6387 | chara_braunii | GBG87225 | 80.2299 | 69.8851 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3866 | 92.2689 | brachypodium_distachyon | KQK13978 | 93.4039 | 89.4137 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.1261 | 91.4286 | oryza_glumipatula | OGLUM03G28190.1 | 93.7862 | 90.1408 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 89.6639 | 86.1345 | oryza_meridionalis | OMERI03G24450.2 | 96.6486 | 92.8442 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 78.7395 | 64.958 | galdieria_sulphuraria | EME27510 | 79.1385 | 65.2872 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 15.6303 | 12.1849 | galdieria_sulphuraria | EME25866 | 61.794 | 48.1728 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.1345 | 92.0168 | triticum_urartu | TuG1812G0500004027.01.T01 | 92.1095 | 88.1643 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 71.3445 | 55.9664 | cyanidioschyzon_merolae | CMH117CT | 71.7061 | 56.25 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.1261 | 91.4286 | oryza_barthii | OBART03G27520.1 | 93.7862 | 90.1408 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.6302 | 92.437 | asparagus_officinalis | ONK73633 | 92.671 | 89.5765 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 97.395 | 94.0336 | musa_acuminata | Ma04_p25510.1 | 97.8885 | 94.5101 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.5546 | 92.1849 | eragrostis_tef | Et_4B_037472.CDS | 92.7361 | 88.5391 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.6387 | 92.2689 | eragrostis_tef | Et_4A_033286.CDS | 91.7065 | 87.5598 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 32.1008 | 30.8403 | saccharum_spontaneum | Sspon.01G0055960-1C-mRNA-1 | 96.4646 | 92.6768 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 25.4622 | 23.6134 | saccharum_spontaneum | Sspon.01G0024270-1A-mRNA-1:cds | 81.2332 | 75.3351 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 94.6218 | 90.7563 | triticum_dicoccoides | TRIDC5AG054710.1 | 92.3708 | 88.5972 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 94.6218 | 90.7563 | triticum_dicoccoides | TRIDC5BG058630.1 | 92.3708 | 88.5972 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 13.9496 | 13.6134 | brassica_oleracea | Bo07988s010.1 | 98.8095 | 96.4286 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3866 | 92.605 | oryza_indica | BGIOSGA013221-PA | 93.8625 | 90.18 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 77.7311 | 65.9664 | ciona_savignyi | ENSCSAVP00000000235 | 74.1186 | 62.9006 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 97.0588 | 93.5294 | dioscorea_rotundata | DRNTG_29641.1 | 96.7337 | 93.2161 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.1261 | 91.3445 | leersia_perrieri | LPERR03G22810.2 | 93.0156 | 89.318 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.4622 | 90.9244 | actinidia_chinensis | PSS16335 | 91.3918 | 87.0475 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 97.3109 | 94.8739 | nymphaea_colorata | NC2G0287520.1:cds | 96.3394 | 93.9268 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 83.8655 | 71.2605 | ostreococcus_lucimarinus | ABO93739 | 85.0085 | 72.2317 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.8824 | 91.9328 | aegilops_tauschii | AET5Gv20875300.21 | 93.448 | 89.5987 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 92.9412 | 88.8235 | digitaria_exilis | Dexi9A01G0015240.1:cds | 93.1761 | 89.048 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 88.8235 | 84.7899 | digitaria_exilis | Dexi9B01G0013270.1:cds | 89.7284 | 85.6536 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3866 | 92.1008 | panicum_hallii | PUZ37793 | 93.252 | 89.1057 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.5546 | 92.1849 | eragrostis_curvula | TVU45917 | 93.7194 | 89.478 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 93.8655 | 88.9076 | selaginella_moellendorffii | EFJ26753 | 94.8217 | 89.8132 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 93.8655 | 88.9076 | selaginella_moellendorffii | EFJ26449 | 94.8217 | 89.8132 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 97.9832 | 95.2101 | vitis_vinifera | Vitvi12g00313_P001 | 97.7368 | 94.9707 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3866 | 92.1008 | echinochloa_crusgalli | scaffold111.407.cds | 93.4039 | 89.2508 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 96.3866 | 92.1849 | echinochloa_crusgalli | scaffold20.356.cds | 93.48 | 89.4051 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.4622 | 91.1765 | echinochloa_crusgalli | scaffold55.464.cds | 92.9624 | 88.7889 |
| AMTR_s00068p00181410 | amborella_trichopoda | ERN20505 | 95.1261 | 91.4286 | oryza_nivara | ONIVA03G28490.1 | 93.7862 | 90.1408 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
