Description

Ensembl ID AMTR_s00064p00193290 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 581 bases Strand Minus strand
Position AmTr_v1.0_scaffold00064 : 3442424 - 3443004 RNA binding domain Ribosomal_L12
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN19832 Ribosomal_L12 PF00542 3.1e-17 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN19832 516 171aa ERN19832

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00064p00193290amborella_trichopodaERN1036776.106273.4513amborella_trichopodaERN1983250.292448.538
AMTR_s00064p00193290amborella_trichopodaERM9436268.372164.186amborella_trichopodaERN1983285.964980.7018
AMTR_s00064p00193290amborella_trichopodaERN0124647.926330.4147amborella_trichopodaERN1983260.818738.5965
AMTR_s00064p00193290amborella_trichopodaERN1863246.341528.0488amborella_trichopodaERN1983244.444426.9006
AMTR_s00064p00193290amborella_trichopodaERN1957344.38229.2135amborella_trichopodaERN1983246.198830.4094
AMTR_s00064p00193290amborella_trichopodaERM9727842.639628.4264amborella_trichopodaERN1983249.122832.7485

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00064p00193290amborella_trichopodaERN1983271.34557.8947papaver_somniferumRZC8325458.095247.1429
AMTR_s00064p00193290amborella_trichopodaERN1983271.929858.4795papaver_somniferumRZC7920967.213154.6448
AMTR_s00064p00193290amborella_trichopodaERN1983262.573144.4444marchantia_polymorphaPTQ3625946.724933.1878
AMTR_s00064p00193290amborella_trichopodaERN1983270.760256.7251cannabis_sativa_femalecds.evm.model.03.148156.542145.3271
AMTR_s00064p00193290amborella_trichopodaERN1983269.005954.386ficus_caricaFCD_00034606-RA:cds64.480950.8197
AMTR_s00064p00193290amborella_trichopodaERN1983270.760257.3099ficus_caricaFCD_00021838-RA:cds43.840635.5072
AMTR_s00064p00193290amborella_trichopodaERN1983266.081952.6316beta_vulgarisKMS9773452.073741.4747
AMTR_s00064p00193290amborella_trichopodaERN1983272.514659.6491theobroma_cacaoEOX9687252.991543.5897
AMTR_s00064p00193290amborella_trichopodaERN1983270.760259.6491cucumis_meloMELO3C002405.2.156.542147.6636
AMTR_s00064p00193290amborella_trichopodaERN1983263.742749.7076arabidopsis_thalianaAT1G70190.152.403840.8654
AMTR_s00064p00193290amborella_trichopodaERN1983226.900620.4678arabidopsis_thalianaAT2G03130.141.818231.8182
AMTR_s00064p00193290amborella_trichopodaERN1983270.760256.7251populus_trichocarpaPotri.003G074800.1.v4.156.018544.9074
AMTR_s00064p00193290amborella_trichopodaERN1983270.760259.0643cucumis_sativusKGN6446456.542147.1963
AMTR_s00064p00193290amborella_trichopodaERN1983263.157950.2924brassica_junceacds.BjuA07g26450S51.674641.1483
AMTR_s00064p00193290amborella_trichopodaERN1983263.742750.8772brassica_junceacds.BjuB03g25280S51.173740.8451
AMTR_s00064p00193290amborella_trichopodaERN1983264.327551.462brassica_napusCDX6835451.643241.3146
AMTR_s00064p00193290amborella_trichopodaERN1983261.403549.1228brassica_napusCDY2351450.239240.1914
AMTR_s00064p00193290amborella_trichopodaERN1983271.929860.2339prunus_persicaONI1159757.476648.1308
AMTR_s00064p00193290amborella_trichopodaERN1983270.760258.4795cajanus_cajanC.cajan_32015.t.cds155.760446.083
AMTR_s00064p00193290amborella_trichopodaERN1983243.274933.9181malus_domestica_goldenCDS:MD05G0209000.167.272752.7273
AMTR_s00064p00193290amborella_trichopodaERN1983271.929859.0643malus_domestica_goldenCDS:MD10G0193900.157.476647.1963
AMTR_s00064p00193290amborella_trichopodaERN1983270.760256.1404glycine_maxKRH4368256.018544.4444
AMTR_s00064p00193290amborella_trichopodaERN1983271.34557.8947glycine_maxKRH1377356.221245.6221
AMTR_s00064p00193290amborella_trichopodaERN1983271.929860.2339prunus_dulcisVVA2728157.476648.1308
AMTR_s00064p00193290amborella_trichopodaERN1983270.760257.3099medicago_truncatulaKEH3822656.018545.3704
AMTR_s00064p00193290amborella_trichopodaERN1983267.836355.5556medicago_truncatulaKEH2256153.456243.7788
AMTR_s00064p00193290amborella_trichopodaERN1983270.175457.8947lupinus_angustifoliusOIW1169855.81446.0465
AMTR_s00064p00193290amborella_trichopodaERN1983270.175455.5556lupinus_angustifoliusOIW0534455.555643.9815
AMTR_s00064p00193290amborella_trichopodaERN1983271.929857.8947phaseolus_vulgarisESW2148557.209346.0465
AMTR_s00064p00193290amborella_trichopodaERN1983270.175456.7251phaseolus_vulgarisESW1750358.536647.3171
AMTR_s00064p00193290amborella_trichopodaERN1983269.005957.3099pisum_sativumPsat1g015120.1.cds154.629645.3704
AMTR_s00064p00193290amborella_trichopodaERN1983270.175457.8947pisum_sativumPsat3g150240.1.cds155.299545.6221
AMTR_s00064p00193290amborella_trichopodaERN1983271.34556.7251vigna_angularisKOM4354656.744245.1163
AMTR_s00064p00193290amborella_trichopodaERN1983271.929858.4795vigna_unguiculataVigun05g189700.1.v1.2.CDS.157.209346.5116
AMTR_s00064p00193290amborella_trichopodaERN1983270.175456.7251vigna_unguiculataVigun01g011800.2.v1.2.CDS.155.81445.1163
AMTR_s00064p00193290amborella_trichopodaERN1983273.099457.3099manihot_esculentaOAY5443057.870445.3704
AMTR_s00064p00193290amborella_trichopodaERN1983273.099462.5731solanum_lycopersicumSolyc02g031970.1.1.158.139549.7674
AMTR_s00064p00193290amborella_trichopodaERN1983266.666753.8012solanum_lycopersicumSolyc11g071530.1.1.155.609844.878
AMTR_s00064p00193290amborella_trichopodaERN1983265.497153.2164capsicum_annuumPHT6896367.469954.8193
AMTR_s00064p00193290amborella_trichopodaERN1983273.099460.8187capsicum_annuumPHT7771057.870448.1481
AMTR_s00064p00193290amborella_trichopodaERN1983271.34557.8947vigna_radiataVradi05g23440.156.744246.0465
AMTR_s00064p00193290amborella_trichopodaERN1983273.684257.3099sesamum_indicumSIN_1006810.t.cds158.604745.5814
AMTR_s00064p00193290amborella_trichopodaERN1983269.005956.1404lactuca_sativacds-PLY61722.154.629644.4444
AMTR_s00064p00193290amborella_trichopodaERN1983263.157952.6316lactuca_sativacds-PLY80774.167.556.25
AMTR_s00064p00193290amborella_trichopodaERN1983267.836354.9708helianthus_annuusCDS:HanXRQr2_Chr12g0523041.154.71744.3396
AMTR_s00064p00193290amborella_trichopodaERN1983255.555637.4269lolium_perennecds.KYUSt_chr1.3920855.882437.6471
AMTR_s00064p00193290amborella_trichopodaERN1983260.233944.4444avena_sativa_sangAVESA.00010b.r2.1DG0156590.1.CDS.152.820538.9744
AMTR_s00064p00193290amborella_trichopodaERN1983260.233945.0292avena_sativa_sangAVESA.00010b.r2.1AG0005840.1.CDS.152.820539.4872
AMTR_s00064p00193290amborella_trichopodaERN1983260.233944.4444avena_sativa_sangAVESA.00010b.r2.1AG0037360.1.CDS.146.396434.2342
AMTR_s00064p00193290amborella_trichopodaERN1983267.836353.2164solanum_tuberosumPGSC0003DMT40004818656.585444.3902
AMTR_s00064p00193290amborella_trichopodaERN1983272.514662.5731solanum_tuberosumPGSC0003DMT40003864657.674449.7674
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749oryza_rufipogonORUFI05G26910.151.515237.3737
AMTR_s00064p00193290amborella_trichopodaERN1983258.479543.2749oryza_brachyanthaOB05G32680.124.875618.408
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749oryza_glaberrimaORGLA05G0216600.151.515237.3737
AMTR_s00064p00193290amborella_trichopodaERN1983260.233943.2749oryza_punctataOPUNC05G22690.152.284337.5635
AMTR_s00064p00193290amborella_trichopodaERN1983260.818744.4444setaria_italicaKQL1442753.608239.1753
AMTR_s00064p00193290amborella_trichopodaERN1983260.233943.8596setaria_viridisTKW2599442.213130.7377
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749triticum_turgidumTRITD1Bv1G205990.152.040837.7551
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.8596secale_cerealeSECCE1Rv1G0054550.1.CDS.152.849738.8601
AMTR_s00064p00193290amborella_trichopodaERN1983259.649144.4444triticum_aestivumTraesCS1B02G403600.1.cds141.632731.0204
AMTR_s00064p00193290amborella_trichopodaERN1983259.649144.4444triticum_aestivumTraesCS1A02G381100.1.cds152.040838.7755
AMTR_s00064p00193290amborella_trichopodaERN1983259.649144.4444triticum_aestivumTraesCS1D02G388900.1.cds152.040838.7755
AMTR_s00064p00193290amborella_trichopodaERN1983260.818744.4444zea_maysZm00001eb343100_P00153.88639.3782
AMTR_s00064p00193290amborella_trichopodaERN1983260.233942.6901zea_maysZm00001eb295090_P00152.55137.2449
AMTR_s00064p00193290amborella_trichopodaERN1983267.836354.386chenopodium_quinoaAUR62001367-RA:cds53.21142.6605
AMTR_s00064p00193290amborella_trichopodaERN1983266.666754.386chenopodium_quinoaAUR62025583-RA:cds52.293642.6605
AMTR_s00064p00193290amborella_trichopodaERN1983257.309940.3509chara_brauniiGBG6832749.746235.0254
AMTR_s00064p00193290amborella_trichopodaERN1983226.900621.0526arabis_alpinaKFK4143962.162248.6486
AMTR_s00064p00193290amborella_trichopodaERN1983265.497147.9532arabis_alpinaKFK4143854.634140
AMTR_s00064p00193290amborella_trichopodaERN1983268.421156.7251corylus_avellanaCav02g26380.t1.cds155.980946.4115
AMTR_s00064p00193290amborella_trichopodaERN1983268.421156.7251corylus_avellanaCav02g26440.t1.cds155.980946.4115
AMTR_s00064p00193290amborella_trichopodaERN1983260.818742.6901brachypodium_distachyonPNT7075551.741336.3184
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749oryza_glumipatulaOGLUM05G26720.151.515237.3737
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749oryza_meridionalisOMERI05G22420.151.515237.3737
AMTR_s00064p00193290amborella_trichopodaERN1983271.34557.3099ipomoea_trilobaitb10g17280.t256.744245.5814
AMTR_s00064p00193290amborella_trichopodaERN1983270.760259.0643kalanchoe_fedtschenkoiKaladp0068s0216.1.v1.1.CDS.156.279146.9767
AMTR_s00064p00193290amborella_trichopodaERN1983271.34557.8947eucalyptus_grandisKCW7554655.707845.2055
AMTR_s00064p00193290amborella_trichopodaERN1983269.590654.386cynara_cardunculusKVH9383756.398144.0758
AMTR_s00064p00193290amborella_trichopodaERN1983270.175457.8947trifolium_pratenseTp57577_TGAC_v2_mRNA2939655.555645.8333
AMTR_s00064p00193290amborella_trichopodaERN1983270.760258.4795trifolium_pratenseTp57577_TGAC_v2_mRNA3015355.760446.083
AMTR_s00064p00193290amborella_trichopodaERN1983272.514659.6491gossypium_raimondiiKJB3291657.943947.6636
AMTR_s00064p00193290amborella_trichopodaERN1983223.976618.1287arabidopsis_lyratafgenesh2_kg.5__213__AT2G03130.140.196130.3922
AMTR_s00064p00193290amborella_trichopodaERN1983263.742749.1228arabidopsis_lyratafgenesh2_kg.2__1274__AT1G70190.153.431441.1765
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749oryza_barthiiOBART05G25120.151.515237.3737
AMTR_s00064p00193290amborella_trichopodaERN1983263.742745.614asparagus_officinalisONK8169655.329939.5939
AMTR_s00064p00193290amborella_trichopodaERN1983263.742751.462musa_acuminataMa09_p20220.152.403842.3077
AMTR_s00064p00193290amborella_trichopodaERN1983264.327550.8772arabidopsis_hallerig03757.t1.cds153.140142.029
AMTR_s00064p00193290amborella_trichopodaERN1983260.233944.4444eragrostis_tefEt_9B_063902.CDS152.55138.7755
AMTR_s00064p00193290amborella_trichopodaERN1983259.649144.4444eragrostis_tefEt_9A_063389.CDS44.736833.3333
AMTR_s00064p00193290amborella_trichopodaERN1983271.929859.0643corymbia_citriodoracds-KAF8013792.156.68246.5438
AMTR_s00064p00193290amborella_trichopodaERN1983234.502927.4854corymbia_citriodoracds-KAF8013791.167.045553.4091
AMTR_s00064p00193290amborella_trichopodaERN1983269.590656.1404rosa_chinensisPRQ3006855.868545.0704
AMTR_s00064p00193290amborella_trichopodaERN1983253.216443.8596juglans_regiacds.Jr_Scaffold_13_00050_p167.910455.9701
AMTR_s00064p00193290amborella_trichopodaERN1983269.590657.3099juglans_regiacds.Jr11_20670_p156.937846.89
AMTR_s00064p00193290amborella_trichopodaERN1983269.590656.7251juglans_regiacds.Jr03_09150_p156.937846.4115
AMTR_s00064p00193290amborella_trichopodaERN1983238.596531.5789juglans_regiacds.Jr08_19600_p164.705952.9412
AMTR_s00064p00193290amborella_trichopodaERN1983261.403545.0292saccharum_spontaneumSspon.07G0021950-1B-mRNA-1:cds49.528336.3208
AMTR_s00064p00193290amborella_trichopodaERN1983260.818744.4444saccharum_spontaneumSspon.07G0021910-3D-mRNA-1:cds53.88639.3782
AMTR_s00064p00193290amborella_trichopodaERN1983259.649144.4444triticum_dicoccoidesTRIDC1AG056030.349.275436.715
AMTR_s00064p00193290amborella_trichopodaERN1983261.403549.1228brassica_oleraceaBo6g094890.150.239240.1914
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749oryza_indicaBGIOSGA017600-PA51.515237.3737
AMTR_s00064p00193290amborella_trichopodaERN1983263.742752.6316dioscorea_rotundataDRNTG_15734.1.cds153.170743.9024
AMTR_s00064p00193290amborella_trichopodaERN1983263.742752.6316dioscorea_rotundataDRNTG_18543.1.cds153.170743.9024
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.8596leersia_perrieriLPERR05G20900.151.515237.8788
AMTR_s00064p00193290amborella_trichopodaERN1983275.438656.7251olea_europaeaOE9A050179C245.422534.1549
AMTR_s00064p00193290amborella_trichopodaERN1983274.853857.8947olea_europaeaOE9A049554C159.534946.0465
AMTR_s00064p00193290amborella_trichopodaERN1983272.514659.0643actinidia_chinensisPSS1109257.674446.9767
AMTR_s00064p00193290amborella_trichopodaERN1983267.836354.9708quercus_subercds-POE57013.155.502444.9761
AMTR_s00064p00193290amborella_trichopodaERN1983267.836354.9708quercus_subercds-POE57012.134.421427.8932
AMTR_s00064p00193290amborella_trichopodaERN1983271.34558.4795nicotiana_attenuataOIT0337656.744246.5116
AMTR_s00064p00193290amborella_trichopodaERN1983266.081952.0468citrus_clementinaESR6189051.598240.6393
AMTR_s00064p00193290amborella_trichopodaERN1983269.590658.4795daucus_carotaKZM8708355.868546.9484
AMTR_s00064p00193290amborella_trichopodaERN1983240.935735.0877daucus_carotaKZM8019264.814855.5556
AMTR_s00064p00193290amborella_trichopodaERN1983269.005958.4795daucus_carotaKZN1168255.399146.9484
AMTR_s00064p00193290amborella_trichopodaERN1983269.005959.0643nymphaea_colorataNC9G0170280.1:cds57.004848.7923
AMTR_s00064p00193290amborella_trichopodaERN1983245.61431.5789ostreococcus_lucimarinusABO9984656.521739.1304
AMTR_s00064p00193290amborella_trichopodaERN1983271.929859.0643coffea_canephoraCDP1127757.209346.9767
AMTR_s00064p00193290amborella_trichopodaERN1983269.590657.3099pistacia_veracds-EVM0024563.156.132146.2264
AMTR_s00064p00193290amborella_trichopodaERN1983260.818743.8596digitaria_exilisDexi3B01G0017400.1:cds41.106729.6443
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749oryza_sativaOs05t0554100-0151.515237.3737
AMTR_s00064p00193290amborella_trichopodaERN1983259.649142.6901panicum_halliiPUZ6487343.776831.3305
AMTR_s00064p00193290amborella_trichopodaERN1983267.836354.386quercus_lobataQL11p013638:mrna:CDS:355.502444.4976
AMTR_s00064p00193290amborella_trichopodaERN1983260.818743.2749eragrostis_curvulaTVT9743129.971221.3256
AMTR_s00064p00193290amborella_trichopodaERN1983260.818743.8596eragrostis_curvulaTVT9879830.952422.3214
AMTR_s00064p00193290amborella_trichopodaERN1983223.976619.2982camelina_sativaCsa09g005350.1.cds151.898741.7722
AMTR_s00064p00193290amborella_trichopodaERN1983225.146218.1287camelina_sativaCsa04g008560.1.cds154.430439.2405
AMTR_s00064p00193290amborella_trichopodaERN1983262.573147.9532camelina_sativaCsa07g037020.149.767438.1395
AMTR_s00064p00193290amborella_trichopodaERN1983263.742749.7076camelina_sativaCsa05g089220.1.cds152.912641.2621
AMTR_s00064p00193290amborella_trichopodaERN1983263.742749.1228camelina_sativaCsa16g031810.1.cds152.912640.7767
AMTR_s00064p00193290amborella_trichopodaERN1983223.976619.2982camelina_sativaCsa06g003070.1.cds151.898741.7722
AMTR_s00064p00193290amborella_trichopodaERN1983249.707633.3333selaginella_moellendorffiiEFJ1278756.291437.7483
AMTR_s00064p00193290amborella_trichopodaERN1983249.707633.3333selaginella_moellendorffiiEFJ1394756.291437.7483
AMTR_s00064p00193290amborella_trichopodaERN1983271.34559.6491vitis_viniferaVitvi01g00114_P00159.223349.5146
AMTR_s00064p00193290amborella_trichopodaERN1983265.497150.8772eutrema_salsugineumESQ2820151.851940.2778
AMTR_s00064p00193290amborella_trichopodaERN1983259.649142.1053echinochloa_crusgalliscaffold13.1002.cds52.577337.1134
AMTR_s00064p00193290amborella_trichopodaERN1983260.233942.6901echinochloa_crusgalliscaffold310.64.cds53.092837.6289
AMTR_s00064p00193290amborella_trichopodaERN1983260.818742.6901echinochloa_crusgalliscaffold77.464.cds53.88637.8238
AMTR_s00064p00193290amborella_trichopodaERN1983260.818743.2749echinochloa_crusgalliscaffold1.352.cds53.608238.1443
AMTR_s00064p00193290amborella_trichopodaERN1983272.514657.3099corchorus_capsularisOMO7495556.108644.3439
AMTR_s00064p00193290amborella_trichopodaERN1983276.608257.8947fraxinus_excelsiorFRAEX38873_v2_000088380.3.cds49.809937.6426
AMTR_s00064p00193290amborella_trichopodaERN1983275.438657.3099fraxinus_excelsiorFRAEX38873_v2_000373980.1.cds16045.5814
AMTR_s00064p00193290amborella_trichopodaERN1983272.514659.0643citrullus_lanatusCla97C03G055380.157.943947.1963
AMTR_s00064p00193290amborella_trichopodaERN1983259.649143.2749oryza_nivaraONIVA05G26320.151.515237.3737

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression