Description

Ensembl ID AMTR_s00062p00098880 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 927 bases Strand Minus strand
Position AmTr_v1.0_scaffold00062 : 1194268 - 1195194 RNA binding domain Ribosomal_L12
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN19573 Ribosomal_L12 PF00542 1.2e-18 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN19573 537 178aa ERN19573

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00062p00098880amborella_trichopodaERM9727884.26481.2183amborella_trichopodaERN1957393.258489.8876
AMTR_s00062p00098880amborella_trichopodaERM9436246.046531.1628amborella_trichopodaERN1957355.61837.6404
AMTR_s00062p00098880amborella_trichopodaERN1036760.17738.9381amborella_trichopodaERN1957338.202224.7191
AMTR_s00062p00098880amborella_trichopodaERN0124645.161329.9539amborella_trichopodaERN1957355.056236.5169
AMTR_s00062p00098880amborella_trichopodaERN1863250.609834.1463amborella_trichopodaERN1957346.629231.4607
AMTR_s00062p00098880amborella_trichopodaERN1983246.198830.4094amborella_trichopodaERN1957344.38229.2135

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00062p00098880amborella_trichopodaERN1957350.561841.573papaver_somniferumRZC6774157.692347.4359
AMTR_s00062p00098880amborella_trichopodaERN1957370.224753.9326papaver_somniferumRZC8346464.766849.7409
AMTR_s00062p00098880amborella_trichopodaERN1957357.303444.382marchantia_polymorphaPTQ3625944.541534.4978
AMTR_s00062p00098880amborella_trichopodaERN1957370.786555.618cannabis_sativa_femalecds.evm.model.03.726.3.5bd9b13765.28551.2953
AMTR_s00062p00098880amborella_trichopodaERN1957367.977555.618ficus_caricaFCD_00003714-RA:cds62.371151.0309
AMTR_s00062p00098880amborella_trichopodaERN1957365.730349.4382beta_vulgarisKMT1059661.904846.5608
AMTR_s00062p00098880amborella_trichopodaERN1957372.471959.5506theobroma_cacaoEOY2073465.816354.0816
AMTR_s00062p00098880amborella_trichopodaERN1957342.134834.8315cucumis_meloMELO3C011871.2.155.970146.2687
AMTR_s00062p00098880amborella_trichopodaERN1957371.348360.6742cucumis_meloMELO3C003920.2.165.803155.9585
AMTR_s00062p00098880amborella_trichopodaERN1957368.539355.618arabidopsis_thalianaAT3G06040.265.591453.2258
AMTR_s00062p00098880amborella_trichopodaERN1957369.662956.1798populus_trichocarpaPotri.015G077200.2.v4.163.589751.2821
AMTR_s00062p00098880amborella_trichopodaERN1957369.101159.5506cucumis_sativusKGN5832863.730654.9223
AMTR_s00062p00098880amborella_trichopodaERN1957368.539356.1798brassica_junceacds.BjuB01g01490S64.210552.6316
AMTR_s00062p00098880amborella_trichopodaERN1957339.325831.4607brassica_junceacds.BjuA03g28790S76.08760.8696
AMTR_s00062p00098880amborella_trichopodaERN1957369.662955.618brassica_napusCDY0522565.263252.1053
AMTR_s00062p00098880amborella_trichopodaERN1957367.415754.4944brassica_napusCDY2771563.492151.3228
AMTR_s00062p00098880amborella_trichopodaERN1957343.258434.2697brassica_napusCDY4999566.956553.0435
AMTR_s00062p00098880amborella_trichopodaERN1957371.910158.427prunus_persicaONI0834866.321253.886
AMTR_s00062p00098880amborella_trichopodaERN1957370.224756.1798cajanus_cajanC.cajan_25669.t.cds165.44552.356
AMTR_s00062p00098880amborella_trichopodaERN1957372.471957.8652malus_domestica_goldenCDS:MD14G0156600.166.839453.3679
AMTR_s00062p00098880amborella_trichopodaERN1957373.595560.1124malus_domestica_goldenCDS:MD06G0141600.167.875655.4404
AMTR_s00062p00098880amborella_trichopodaERN1957372.471957.8652glycine_maxKRH3686067.539353.9267
AMTR_s00062p00098880amborella_trichopodaERN1957371.910156.1798glycine_maxKRH1185166.666752.0833
AMTR_s00062p00098880amborella_trichopodaERN1957371.910158.427prunus_dulcisVVA3050266.321253.886
AMTR_s00062p00098880amborella_trichopodaERN1957369.101155.0562medicago_truncatulaKEH3710364.736851.5789
AMTR_s00062p00098880amborella_trichopodaERN1957369.662955.618lupinus_angustifoliusOIV9597266.666753.2258
AMTR_s00062p00098880amborella_trichopodaERN1957369.662956.1798phaseolus_vulgarisESW1942764.921552.356
AMTR_s00062p00098880amborella_trichopodaERN1957370.224753.9326pisum_sativumPsat1g164640.1.cds165.44550.2618
AMTR_s00062p00098880amborella_trichopodaERN1957371.348356.7416vigna_angularisKOM5309566.492152.8796
AMTR_s00062p00098880amborella_trichopodaERN1957369.662954.4944vigna_unguiculataVigun06g135500.1.v1.2.CDS.164.921550.7853
AMTR_s00062p00098880amborella_trichopodaERN1957370.786558.9888manihot_esculentaOAY4778065.28554.4041
AMTR_s00062p00098880amborella_trichopodaERN1957370.224757.8652manihot_esculentaOAY3086964.766853.3679
AMTR_s00062p00098880amborella_trichopodaERN1957365.168550solanum_lycopersicumSolyc09g010030.2.169.047652.9762
AMTR_s00062p00098880amborella_trichopodaERN1957371.348355.618capsicum_annuumPHT7163863.184149.2537
AMTR_s00062p00098880amborella_trichopodaERN1957371.910156.7416vigna_radiataVradi10g06010.167.015752.8796
AMTR_s00062p00098880amborella_trichopodaERN1957370.786553.3708sesamum_indicumSIN_1024798.t.cds164.948548.9691
AMTR_s00062p00098880amborella_trichopodaERN1957369.662953.9326sesamum_indicumSIN_1002571.t.cds163.917549.4845
AMTR_s00062p00098880amborella_trichopodaERN1957371.910157.3034lactuca_sativacds-PLY94173.168.085154.2553
AMTR_s00062p00098880amborella_trichopodaERN1957369.662956.1798helianthus_annuusCDS:HanXRQr2_Chr08g0355191.165.263252.6316
AMTR_s00062p00098880amborella_trichopodaERN1957373.033759.5506helianthus_annuusCDS:HanXRQr2_Chr05g0229881.167.357554.9223
AMTR_s00062p00098880amborella_trichopodaERN1957363.483148.8764avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0000298.146.502135.8025
AMTR_s00062p00098880amborella_trichopodaERN1957364.606749.4382lolium_perennecds.KYUSt_chr6.2210459.895845.8333
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150.5618oryza_longistaminataKN538855.1_FGP03058.549246.6321
AMTR_s00062p00098880amborella_trichopodaERN1957363.483148.3146avena_sativa_sangAVESA.00010b.r2.6AG1013220.2.CDS.159.473745.2632
AMTR_s00062p00098880amborella_trichopodaERN1957363.483148.8764avena_sativa_sangAVESA.00010b.r2.6CG1106690.1.CDS.159.473745.7895
AMTR_s00062p00098880amborella_trichopodaERN1957364.044948.8764avena_sativa_sangAVESA.00010b.r2.6DG1186070.1.CDS.16045.7895
AMTR_s00062p00098880amborella_trichopodaERN1957373.033758.427solanum_tuberosumPGSC0003DMT40002287167.010353.6082
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150.5618oryza_rufipogonORUFI02G07660.158.549246.6321
AMTR_s00062p00098880amborella_trichopodaERN1957357.865246.0674oryza_brachyanthaOB02G16850.165.605152.2293
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150.5618oryza_glaberrimaORGLA02G0071000.158.549246.6321
AMTR_s00062p00098880amborella_trichopodaERN1957364.044951.1236oryza_punctataOPUNC02G06760.159.067447.1503
AMTR_s00062p00098880amborella_trichopodaERN1957365.730351.6854setaria_italicaKQL2824960.937547.9167
AMTR_s00062p00098880amborella_trichopodaERN1957365.730351.6854setaria_viridisTKW3742460.937547.9167
AMTR_s00062p00098880amborella_trichopodaERN1957356.741644.382sorghum_bicolorOQU8458159.763346.7456
AMTR_s00062p00098880amborella_trichopodaERN1957356.741643.8202sorghum_bicolorOQU8458359.763346.1538
AMTR_s00062p00098880amborella_trichopodaERN1957364.044947.7528triticum_turgidumTRITD6Bv1G071670.159.37544.2708
AMTR_s00062p00098880amborella_trichopodaERN1957364.044948.3146triticum_turgidumTRITD6Av1G064730.159.37544.7917
AMTR_s00062p00098880amborella_trichopodaERN1957364.044949.4382secale_cerealeSECCE6Rv1G0387650.1.CDS.159.685946.0733
AMTR_s00062p00098880amborella_trichopodaERN1957364.044948.3146triticum_aestivumTraesCS6A02G161800.1.cds159.37544.7917
AMTR_s00062p00098880amborella_trichopodaERN1957364.044947.7528triticum_aestivumTraesCS6D02G150400.1.cds159.37544.2708
AMTR_s00062p00098880amborella_trichopodaERN1957364.044947.7528triticum_aestivumTraesCS6B02G189400.1.cds159.37544.2708
AMTR_s00062p00098880amborella_trichopodaERN1957364.044949.4382zea_maysZm00001eb205850_P00159.685946.0733
AMTR_s00062p00098880amborella_trichopodaERN1957364.044948.3146zea_maysZm00001eb235930_P00259.37544.7917
AMTR_s00062p00098880amborella_trichopodaERN1957367.415752.809ananas_comosusAco020081.1.mrna1.cds162.548.9583
AMTR_s00062p00098880amborella_trichopodaERN1957365.730351.6854chenopodium_quinoaAUR62008204-RA:cds61.904848.6772
AMTR_s00062p00098880amborella_trichopodaERN1957353.932639.8876chara_brauniiGBG6832748.73136.0406
AMTR_s00062p00098880amborella_trichopodaERN1957373.595560.1124corylus_avellanaCav03g04840.t1.cds167.525855.1546
AMTR_s00062p00098880amborella_trichopodaERN1957366.292149.4382brachypodium_distachyonKQJ9389261.458345.8333
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150.5618oryza_glumipatulaOGLUM02G07600.258.549246.6321
AMTR_s00062p00098880amborella_trichopodaERN1957369.101154.4944ipomoea_trilobaitb12g08760.t150.826440.0826
AMTR_s00062p00098880amborella_trichopodaERN1957369.662955.618ipomoea_trilobaitb11g21110.t163.917551.0309
AMTR_s00062p00098880amborella_trichopodaERN1957370.786558.427kalanchoe_fedtschenkoiKaladp0032s0086.1.v1.1.CDS.164.948553.6082
AMTR_s00062p00098880amborella_trichopodaERN1957364.044948.3146triticum_urartuTuG1812G0600001683.01.T01.cds45717759.37544.7917
AMTR_s00062p00098880amborella_trichopodaERN1957371.348359.5506eucalyptus_grandisKCW7780263.819153.2663
AMTR_s00062p00098880amborella_trichopodaERN1957373.595557.8652cynara_cardunculusKVH9893870.430155.3763
AMTR_s00062p00098880amborella_trichopodaERN1957369.101153.9326trifolium_pratenseTp57577_TGAC_v2_mRNA830864.397950.2618
AMTR_s00062p00098880amborella_trichopodaERN1957373.033759.5506gossypium_raimondiiKJB5291266.666754.359
AMTR_s00062p00098880amborella_trichopodaERN1957368.539355.0562arabidopsis_lyratafgenesh2_kg.3__604__AT3G06040.265.591452.6882
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150oryza_barthiiOBART02G07550.158.549246.114
AMTR_s00062p00098880amborella_trichopodaERN1957357.865247.191asparagus_officinalisONK5650079.84565.1163
AMTR_s00062p00098880amborella_trichopodaERN1957369.662956.7416musa_acuminataMa11_p24780.264.583352.6042
AMTR_s00062p00098880amborella_trichopodaERN1957369.101155.618arabidopsis_hallerig06397.t1.cds166.12953.2258
AMTR_s00062p00098880amborella_trichopodaERN1957355.61842.1348eragrostis_tefEt_1B_010231.CDS58.579944.3787
AMTR_s00062p00098880amborella_trichopodaERN1957355.61842.6966eragrostis_tefEt_1A_005256.CDS58.579944.9704
AMTR_s00062p00098880amborella_trichopodaERN1957371.348359.5506corymbia_citriodoracds-KAF8032804.165.463954.6392
AMTR_s00062p00098880amborella_trichopodaERN1957366.853952.809corymbia_citriodoracds-KAF8009818.161.979248.9583
AMTR_s00062p00098880amborella_trichopodaERN1957371.348357.3034rosa_chinensisPRQ1730365.803152.8497
AMTR_s00062p00098880amborella_trichopodaERN1957372.471958.9888juglans_regiacds.Jr02_03300_p166.839454.4041
AMTR_s00062p00098880amborella_trichopodaERN1957364.044950.5618saccharum_spontaneumSspon.04G0015630-2B-mRNA-143.34634.2205
AMTR_s00062p00098880amborella_trichopodaERN1957362.921350saccharum_spontaneumSspon.04G0015630-3C-mRNA-1.cds160.215147.8495
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150saccharum_spontaneumSspon.04G0027920-1P-mRNA-1:cds24.565219.3478
AMTR_s00062p00098880amborella_trichopodaERN1957364.044947.7528triticum_dicoccoidesTRIDC6BG028440.146.913634.9794
AMTR_s00062p00098880amborella_trichopodaERN1957364.044948.3146triticum_dicoccoidesTRIDC6AG022930.342.857132.3308
AMTR_s00062p00098880amborella_trichopodaERN1957369.662955.618brassica_oleraceaBo5g144830.165.263252.1053
AMTR_s00062p00098880amborella_trichopodaERN1957344.943834.2697brassica_oleraceaBo3g060380.169.565253.0435
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150.5618oryza_indicaBGIOSGA006937-PA58.549246.6321
AMTR_s00062p00098880amborella_trichopodaERN1957371.910155.0562dioscorea_rotundataDRNTG_08658.1.cds168.449252.4064
AMTR_s00062p00098880amborella_trichopodaERN1957364.606751.6854leersia_perrieriLPERR02G06520.149.783639.8268
AMTR_s00062p00098880amborella_trichopodaERN1957370.224753.9326olea_europaeaOE9A038465C164.43349.4845
AMTR_s00062p00098880amborella_trichopodaERN1957370.224757.3034olea_europaeaOE9A107336C164.43352.5773
AMTR_s00062p00098880amborella_trichopodaERN1957371.910157.3034actinidia_chinensisPSS0778065.979452.5773
AMTR_s00062p00098880amborella_trichopodaERN1957371.910158.427prunus_aviumPav_sc0001309.1_g980.1.mk:CDS:166.321253.886
AMTR_s00062p00098880amborella_trichopodaERN1957341.011231.4607prunus_aviumPav_sc0004634.1_g100.1.br:mrna52.51840.2878
AMTR_s00062p00098880amborella_trichopodaERN1957341.011232.0225prunus_aviumPav_sc0002106.1_g050.1.br:CDS:170.192354.8077
AMTR_s00062p00098880amborella_trichopodaERN1957373.595559.5506quercus_subercds-POE82808.167.875654.9223
AMTR_s00062p00098880amborella_trichopodaERN1957373.595559.5506quercus_subercds-POE82810.167.875654.9223
AMTR_s00062p00098880amborella_trichopodaERN1957373.595559.5506quercus_subercds-POE76091.167.875654.9223
AMTR_s00062p00098880amborella_trichopodaERN1957372.471957.3034nicotiana_attenuataOIT0169865.482251.7766
AMTR_s00062p00098880amborella_trichopodaERN1957369.101152.2472citrus_clementinaESR4229663.730648.1865
AMTR_s00062p00098880amborella_trichopodaERN1957368.539355.0562brassica_rapa_ro18A05p051910.1_BraROA.128.175522.6328
AMTR_s00062p00098880amborella_trichopodaERN1957368.539354.4944daucus_carotaKZM8906363.541750.5208
AMTR_s00062p00098880amborella_trichopodaERN1957377.528163.4831nymphaea_colorataNC8G0214240.1:cds71.502658.5492
AMTR_s00062p00098880amborella_trichopodaERN1957376.966361.7978nymphaea_colorataNC1G0177110.1:cds55.020144.1767
AMTR_s00062p00098880amborella_trichopodaERN1957342.134829.7753ostreococcus_lucimarinusABO9984654.347838.4058
AMTR_s00062p00098880amborella_trichopodaERN1957371.910158.9888coffea_canephoraCDP1851765.979454.1237
AMTR_s00062p00098880amborella_trichopodaERN1957371.910158.9888coffea_canephoraCDP0035358.986248.3871
AMTR_s00062p00098880amborella_trichopodaERN1957370.786557.8652coffea_canephoraCDP1851953.61743.8298
AMTR_s00062p00098880amborella_trichopodaERN1957364.044947.7528aegilops_tauschiiAET6Gv20408000.242.066431.3653
AMTR_s00062p00098880amborella_trichopodaERN1957373.595561.7978pistacia_veracds-EVM0007142.167.875656.9948
AMTR_s00062p00098880amborella_trichopodaERN1957354.494442.6966digitaria_exilisDexi1B01G0007840.1:cds69.784254.6763
AMTR_s00062p00098880amborella_trichopodaERN1957354.494442.1348digitaria_exilisDexi1A01G0008130.1:cds69.784253.9568
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150.5618oryza_sativaOs02t0198900-0158.549246.6321
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150panicum_halliiPUZ7454858.854246.3542
AMTR_s00062p00098880amborella_trichopodaERN1957373.595559.5506quercus_lobataQL10p015865:mrna:CDS:167.875654.9223
AMTR_s00062p00098880amborella_trichopodaERN1957370.224756.1798camelina_sativaCsa01g007040.1.cds166.489453.1915
AMTR_s00062p00098880amborella_trichopodaERN1957370.224756.1798camelina_sativaCsa19g008680.1.cds166.489453.1915
AMTR_s00062p00098880amborella_trichopodaERN1957369.662955.618camelina_sativaCsa15g007610.1.cds165.957452.6596
AMTR_s00062p00098880amborella_trichopodaERN1957346.067430.8989selaginella_moellendorffiiEFJ1278754.304636.4238
AMTR_s00062p00098880amborella_trichopodaERN1957346.067430.8989selaginella_moellendorffiiEFJ1394754.304636.4238
AMTR_s00062p00098880amborella_trichopodaERN1957373.033756.1798vitis_viniferaVitvi17g00824_P00167.357551.8135
AMTR_s00062p00098880amborella_trichopodaERN1957370.224756.7416eutrema_salsugineumESQ4944266.489453.7234
AMTR_s00062p00098880amborella_trichopodaERN1957363.483150echinochloa_crusgalliscaffold6.178.cds21.121516.6355
AMTR_s00062p00098880amborella_trichopodaERN1957362.359649.4382echinochloa_crusgalliscaffold258.10.cds5039.6396
AMTR_s00062p00098880amborella_trichopodaERN1957369.662956.7416corchorus_capsularisOMO5994963.917552.0619
AMTR_s00062p00098880amborella_trichopodaERN1957370.224757.3034fraxinus_excelsiorFRAEX38873_v2_000087340.1.cds164.43352.5773
AMTR_s00062p00098880amborella_trichopodaERN1957369.662952.809fraxinus_excelsiorFRAEX38873_v2_000394510.1.cds163.917548.4536
AMTR_s00062p00098880amborella_trichopodaERN1957371.348357.3034citrullus_lanatusCla97C06G125280.157.466146.1538
AMTR_s00062p00098880amborella_trichopodaERN1957360.674248.8764oryza_nivaraONIVA02G09080.158.064546.7742

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression