Description

Ensembl ID AMTR_s00060p00141700 Gene ID Accession -
Symbol Alias - Full Name cleavage and polyadenylation specificity factor 73 kDa subunit-II
Status Confidence Length 56818 bases Strand Minus strand
Position AmTr_v1.0_scaffold00060 : 2030553 - 2087370 RNA binding domain Lactamase_B , Beta-Casp , RMMBL
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERM95886 Lactamase_B PF00753 1.4e-11 1
ERM95886 Beta-Casp PF10996 4.3e-22 2
ERM95886 RMMBL PF07521 2.2e-16 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERM95886 2151 716aa ERM95886

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00060p00141700amborella_trichopodaERN0173129.759713.8632amborella_trichopodaERM9588622.48610.4749
AMTR_s00060p00141700amborella_trichopodaERM9464044.05126.7705amborella_trichopodaERM9588643.435826.3966
AMTR_s00060p00141700amborella_trichopodaERM9480843.829826.8085amborella_trichopodaERM9588643.156426.3966
AMTR_s00060p00141700amborella_trichopodaERM9505731.207616.4179amborella_trichopodaERM9588632.122916.8994
AMTR_s00060p00141700amborella_trichopodaERM9503122.055411.3164amborella_trichopodaERM9588626.67613.6872

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00060p00141700amborella_trichopodaERM9588637.709523.743chondrus_crispusCDF3990350.467331.7757
AMTR_s00060p00141700amborella_trichopodaERM9588664.944152.933papaver_somniferumRZC5797773.57659.9684
AMTR_s00060p00141700amborella_trichopodaERM9588671.508459.0782papaver_somniferumRZC6175475.516262.3894
AMTR_s00060p00141700amborella_trichopodaERM9588666.340850.9777marchantia_polymorphaPTQ4375061.929647.588
AMTR_s00060p00141700amborella_trichopodaERM9588668.016854.7486cannabis_sativa_femalecds.evm.model.04.14856.759945.6876
AMTR_s00060p00141700amborella_trichopodaERM9588638.826828.2123ficus_caricaFCD_00025797-RA:cds55.711440.481
AMTR_s00060p00141700amborella_trichopodaERM9588634.078230.7263ficus_caricaFCD_00025796-RA:cds89.051180.292
AMTR_s00060p00141700amborella_trichopodaERM9588660.474950.838beta_vulgarisKMS9839082.319469.2015
AMTR_s00060p00141700amborella_trichopodaERM9588670.111757.2626theobroma_cacaoEOY0110376.407962.4049
AMTR_s00060p00141700amborella_trichopodaERM9588651.67636.0335chlamydomonas_reinhardtiiPNW8628436.097625.1707
AMTR_s00060p00141700amborella_trichopodaERM9588665.083852.6536arabidopsis_thalianaAT2G01730.176.019661.5008
AMTR_s00060p00141700amborella_trichopodaERM9588668.575458.1006populus_trichocarpaPotri.010G106200.1.v4.174.733663.3181
AMTR_s00060p00141700amborella_trichopodaERM9588667.318456.2849cucumis_sativusKGN6337971.301859.6154
AMTR_s00060p00141700amborella_trichopodaERM9588663.966551.9553brassica_junceacds.BjuB04g45880S42.964434.8968
AMTR_s00060p00141700amborella_trichopodaERM9588665.363152.6536brassica_napusCDY0942176.097661.3008
AMTR_s00060p00141700amborella_trichopodaERM9588665.502852.6536brassica_napusCDY6664276.260261.3008
AMTR_s00060p00141700amborella_trichopodaERM9588668.296157.1229prunus_persicaONI3183574.316162.1581
AMTR_s00060p00141700amborella_trichopodaERM9588656.424647.2067cajanus_cajanC.cajan_42754.t80.158767.0635
AMTR_s00060p00141700amborella_trichopodaERM9588668.575457.6816malus_domestica_goldenmRNA:MD16G001630074.057362.2926
AMTR_s00060p00141700amborella_trichopodaERM9588659.497250.6983glycine_maxKRH7035380.075268.2331
AMTR_s00060p00141700amborella_trichopodaERM9588668.435857.1229prunus_dulcisVVA1459574.468162.1581
AMTR_s00060p00141700amborella_trichopodaERM9588659.078250.5587medicago_truncatulaKEH4063079.213567.7903
AMTR_s00060p00141700amborella_trichopodaERM9588620.530715.5028lupinus_angustifoliusOIW0195067.431250.9174
AMTR_s00060p00141700amborella_trichopodaERM9588624.720722.486lupinus_angustifoliusOIW0194987.192179.3103
AMTR_s00060p00141700amborella_trichopodaERM9588665.223551.9553physcomitrium_patensPp3c5_16690V3.458.302146.4419
AMTR_s00060p00141700amborella_trichopodaERM9588660.195550.5587phaseolus_vulgarisESW2523080.260767.4115
AMTR_s00060p00141700amborella_trichopodaERM9588652.234644.4134pisum_sativumPsat6g046600.1.cds80.603468.5345
AMTR_s00060p00141700amborella_trichopodaERM9588618.575416.7598vigna_angularisKOM3386583.12575
AMTR_s00060p00141700amborella_trichopodaERM9588621.508415.9218vigna_angularisKOM3386867.841450.2203
AMTR_s00060p00141700amborella_trichopodaERM9588627.653621.5084vigna_unguiculataVigunL078200.1.v1.27256
AMTR_s00060p00141700amborella_trichopodaERM9588657.960948.743vigna_unguiculataVigunL005900.3.v1.280.582567.767
AMTR_s00060p00141700amborella_trichopodaERM9588659.776550.1397vigna_unguiculataVigun02g018800.1.v1.280.451167.4812
AMTR_s00060p00141700amborella_trichopodaERM9588624.720718.9944vigna_unguiculataVigunL001800.2.v1.269.960553.7549
AMTR_s00060p00141700amborella_trichopodaERM9588615.921811.0335vigna_unguiculataVigun01g000100.1.v1.263.687144.1341
AMTR_s00060p00141700amborella_trichopodaERM9588668.016856.8436manihot_esculentaOAY2531054.051145.172
AMTR_s00060p00141700amborella_trichopodaERM9588668.435856.9832solanum_lycopersicumSolyc04g008030.2.175.500862.8659
AMTR_s00060p00141700amborella_trichopodaERM9588666.620156.5642capsicum_annuumPHT8129374.299163.0841
AMTR_s00060p00141700amborella_trichopodaERM9588660.055950.419vigna_radiataVradi08g00090.180.074567.2253
AMTR_s00060p00141700amborella_trichopodaERM9588628.910619.4134sesamum_indicumSIN_1017021.t64.890343.5737
AMTR_s00060p00141700amborella_trichopodaERM9588668.994457.6816lactuca_sativacds-PLY75759.178.412765.5556
AMTR_s00060p00141700amborella_trichopodaERM9588666.620155.4469helianthus_annuusmRNA:HanXRQr2_Chr17g078003175.594362.916
AMTR_s00060p00141700amborella_trichopodaERM9588660.754250.9777avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0002394.578.237465.6475
AMTR_s00060p00141700amborella_trichopodaERM9588661.033550.9777avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0001935.278.738765.7658
AMTR_s00060p00141700amborella_trichopodaERM9588660.474950.9777avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0001997.177.046364.9466
AMTR_s00060p00141700amborella_trichopodaERM9588660.754251.1173lolium_perennecds.KYUSt_chr5.2922478.519966.065
AMTR_s00060p00141700amborella_trichopodaERM9588661.452550.838lolium_perennecds.KYUSt_chr5.2928271.312858.9951
AMTR_s00060p00141700amborella_trichopodaERM9588657.541948.0447oryza_longistaminataKN539752.1_FGP00777.589564.7834
AMTR_s00060p00141700amborella_trichopodaERM9588660.893951.1173avena_sativa_sangAVESA.00010b.r2.5AG0843530.1.CDS78.417365.8273
AMTR_s00060p00141700amborella_trichopodaERM9588661.033550.9777avena_sativa_sangAVESA.00010b.r2.5DG0966220.1.CDS78.738765.7658
AMTR_s00060p00141700amborella_trichopodaERM9588660.614550.838avena_sativa_sangAVESA.00010b.r2.5CG0890870.1.CDS81.121568.0374
AMTR_s00060p00141700amborella_trichopodaERM9588630.307322.7654solanum_tuberosumPGSC0003DMT40007578861.647746.3068
AMTR_s00060p00141700amborella_trichopodaERM9588661.173251.257oryza_rufipogonORUFI09G10080.176.573464.1608
AMTR_s00060p00141700amborella_trichopodaERM9588661.033550.9777oryza_brachyanthaOB09G16130.172.954960.9349
AMTR_s00060p00141700amborella_trichopodaERM9588661.173251.257oryza_glaberrimaORGLA09G0069700.178.354265.653
AMTR_s00060p00141700amborella_trichopodaERM9588661.312951.5363oryza_punctataOPUNC09G07930.176.083263.9515
AMTR_s00060p00141700amborella_trichopodaERM9588659.776550.5587setaria_italicaKQL2440476.292364.5276
AMTR_s00060p00141700amborella_trichopodaERM9588652.653640.2235setaria_italicaKQL2440370.204853.6313
AMTR_s00060p00141700amborella_trichopodaERM9588651.25739.6648setaria_viridisTKW3302772.529656.1265
AMTR_s00060p00141700amborella_trichopodaERM9588659.776550.5587setaria_viridisTKW3302876.292364.5276
AMTR_s00060p00141700amborella_trichopodaERM9588660.195550.1397sorghum_bicolorEES0108077.240164.3369
AMTR_s00060p00141700amborella_trichopodaERM9588661.592251.5363triticum_turgidumTRITD0Uv1G039660.679.032366.129
AMTR_s00060p00141700amborella_trichopodaERM9588661.731851.8156triticum_turgidumTRITD5Bv1G123850.176.338564.076
AMTR_s00060p00141700amborella_trichopodaERM9588661.871552.2346secale_cerealeSECCE5Rv1G0326480.180.253667.7536
AMTR_s00060p00141700amborella_trichopodaERM9588661.592251.5363triticum_aestivumTraesCS5A02G203800.179.891366.8478
AMTR_s00060p00141700amborella_trichopodaERM9588650.558742.0391triticum_aestivumTraesCS5B02G202500.178.867165.5773
AMTR_s00060p00141700amborella_trichopodaERM9588661.592251.5363triticum_aestivumTraesCS5D02G210400.179.891366.8478
AMTR_s00060p00141700amborella_trichopodaERM9588659.776549.581zea_maysZm00001eb159740_P00476.702563.6201
AMTR_s00060p00141700amborella_trichopodaERM9588667.597856.7039ananas_comosusAco001029.1.mrna169.841358.5859
AMTR_s00060p00141700amborella_trichopodaERM9588652.234636.1732caenorhabditis_elegansF10B5.8.161.513242.5987
AMTR_s00060p00141700amborella_trichopodaERM9588655.586639.2458drosophila_melanogasterFBpp008484266.666747.0687
AMTR_s00060p00141700amborella_trichopodaERM9588656.843639.8045homo_sapiensENSP0000041349367.833347.5
AMTR_s00060p00141700amborella_trichopodaERM9588661.452543.0168chara_brauniiGBG6141040.40428.2828
AMTR_s00060p00141700amborella_trichopodaERM9588664.944152.2346arabis_alpinaKFK3339676.104761.2111
AMTR_s00060p00141700amborella_trichopodaERM9588620.251418.1564corylus_avellanaCav04g09060.t185.798876.9231
AMTR_s00060p00141700amborella_trichopodaERM9588623.463716.3408corylus_avellanaCav04g09070.t159.154941.1972
AMTR_s00060p00141700amborella_trichopodaERM9588661.173250.6983brachypodium_distachyonKQJ9014876.306663.2404
AMTR_s00060p00141700amborella_trichopodaERM9588661.173251.1173oryza_glumipatulaOGLUM09G09610.172.396760.4959
AMTR_s00060p00141700amborella_trichopodaERM9588667.318455.8659ipomoea_trilobaitb07g06450.t175.786262.8931
AMTR_s00060p00141700amborella_trichopodaERM9588668.575455.4469kalanchoe_fedtschenkoiKaladp1304s0007.1.v1.177.080162.3234
AMTR_s00060p00141700amborella_trichopodaERM9588630.307319.5531galdieria_sulphurariaEME3258258.648637.8378
AMTR_s00060p00141700amborella_trichopodaERM9588661.592251.5363triticum_urartuTuG1812G0500002393.01.T0179.891366.8478
AMTR_s00060p00141700amborella_trichopodaERM9588667.877157.2626eucalyptus_grandisKCW6449674.884463.1741
AMTR_s00060p00141700amborella_trichopodaERM9588659.776551.257trifolium_pratenseTp57577_TGAC_v2_mRNA3810680.602669.1149
AMTR_s00060p00141700amborella_trichopodaERM9588642.178831.8436gossypium_raimondiiKJB7819071.904854.2857
AMTR_s00060p00141700amborella_trichopodaERM9588627.374324.8603gossypium_raimondiiKJB7818788.288380.1802
AMTR_s00060p00141700amborella_trichopodaERM9588662.150851.3966arabidopsis_lyratafgenesh1_pm.C_scaffold_500006054.334644.9328
AMTR_s00060p00141700amborella_trichopodaERM9588661.173251.1173hordeum_vulgareHORVU.MOREX.r3.5HG0478980.179.204366.1844
AMTR_s00060p00141700amborella_trichopodaERM9588661.033551.257oryza_barthiiOBART09G09390.178.175365.653
AMTR_s00060p00141700amborella_trichopodaERM9588670.391157.9609musa_acuminataMa03_p07480.176.018162.5943
AMTR_s00060p00141700amborella_trichopodaERM9588665.363152.933arabidopsis_hallerig14559.t176.221561.7264
AMTR_s00060p00141700amborella_trichopodaERM9588660.474950.1397eragrostis_tefEt_2B_020451.CDS77.321464.1071
AMTR_s00060p00141700amborella_trichopodaERM9588659.776550.1397eragrostis_tefEt_2A_016362.CDS78.532165.8716
AMTR_s00060p00141700amborella_trichopodaERM9588643.715139.9441corymbia_citriodoracds-KAF8021145.184.366677.089
AMTR_s00060p00141700amborella_trichopodaERM9588626.396618.0168corymbia_citriodoracds-KAF8021143.158.333339.8148
AMTR_s00060p00141700amborella_trichopodaERM9588668.296156.9832rosa_chinensisPRQ4107571.282859.4752
AMTR_s00060p00141700amborella_trichopodaERM9588668.296157.4022rosa_chinensisPRQ4451676.28764.1186
AMTR_s00060p00141700amborella_trichopodaERM9588668.994457.2626juglans_regiacds.Jr16_06630_p174.06361.4693
AMTR_s00060p00141700amborella_trichopodaERM9588668.016856.7039juglans_regiacds.Jr16_06620_p177.795564.8562
AMTR_s00060p00141700amborella_trichopodaERM9588655.167645.6704saccharum_spontaneumSspon.03G0011380-2B-mRNA-1:cds74.669261.8147
AMTR_s00060p00141700amborella_trichopodaERM9588661.592251.5363triticum_dicoccoidesTRIDC5AG032900.379.891366.8478
AMTR_s00060p00141700amborella_trichopodaERM9588661.731851.8156triticum_dicoccoidesTRIDC5BG034730.380.072567.2101
AMTR_s00060p00141700amborella_trichopodaERM9588665.502852.514brassica_oleraceaBo2g134540.176.260261.1382
AMTR_s00060p00141700amborella_trichopodaERM9588661.173251.257oryza_indicaBGIOSGA030716-PA78.354265.653
AMTR_s00060p00141700amborella_trichopodaERM9588654.329639.6648ciona_savignyiENSCSAVP0000001245463.562146.4052
AMTR_s00060p00141700amborella_trichopodaERM9588638.128529.4693dioscorea_rotundataDRNTG_24270.164.235349.6471
AMTR_s00060p00141700amborella_trichopodaERM9588654.748645.6704leersia_perrieriLPERR09G06440.177.165464.3701
AMTR_s00060p00141700amborella_trichopodaERM9588668.575456.1453olea_europaeaOE9A084405C176.12462.3256
AMTR_s00060p00141700amborella_trichopodaERM9588670.251457.6816actinidia_chinensisPSR8811778.593864.5312
AMTR_s00060p00141700amborella_trichopodaERM9588668.296156.8436prunus_aviumPav_sc0000893.1_g390.1.mk:mrna48.802440.6188
AMTR_s00060p00141700amborella_trichopodaERM9588668.296157.5419quercus_subercds-POE97861.175.696663.7771
AMTR_s00060p00141700amborella_trichopodaERM9588622.625719.8324nicotiana_attenuataOIT2068284.816874.3456
AMTR_s00060p00141700amborella_trichopodaERM9588650.698341.2011nicotiana_attenuataOIT2068370.077256.9498
AMTR_s00060p00141700amborella_trichopodaERM9588668.435857.2626citrus_clementinaESR6139975.851463.4675
AMTR_s00060p00141700amborella_trichopodaERM9588665.363152.6536brassica_rapa_ro18A02p046430.1_BraROA.176.097661.3008
AMTR_s00060p00141700amborella_trichopodaERM9588669.413457.1229daucus_carotaKZM8577576.22762.7301
AMTR_s00060p00141700amborella_trichopodaERM9588664.106152.933nymphaea_colorataNC8G0214690.1:cds72.626659.9684
AMTR_s00060p00141700amborella_trichopodaERM9588668.575458.6592coffea_canephoraCDP1629175.888764.915
AMTR_s00060p00141700amborella_trichopodaERM9588661.592251.5363aegilops_tauschiiAET5Gv20498700.279.891366.8478
AMTR_s00060p00141700amborella_trichopodaERM9588670.810158.2402pistacia_veracds-EVM0006012.178.240764.3519
AMTR_s00060p00141700amborella_trichopodaERM9588659.217950.9777digitaria_exilisDexi2A01G0016970.1:cds73.996563.6998
AMTR_s00060p00141700amborella_trichopodaERM9588653.491643.0168digitaria_exilisDexi2B01G0015930.1:cds65.136152.381
AMTR_s00060p00141700amborella_trichopodaERM9588640.083833.3799digitaria_exilisDexi2A01G0016950.1:cds79.063465.8402
AMTR_s00060p00141700amborella_trichopodaERM9588658.519650.2793digitaria_exilisDexi2B01G0015940.1:cds72.869662.6087
AMTR_s00060p00141700amborella_trichopodaERM9588661.173251.257oryza_sativaOs09t0397900-0178.354265.653
AMTR_s00060p00141700amborella_trichopodaERM9588659.916250.2793panicum_halliiPUZ7062676.607164.2857
AMTR_s00060p00141700amborella_trichopodaERM9588634.078229.7486eragrostis_curvulaTVU0946087.769876.6187
AMTR_s00060p00141700amborella_trichopodaERM9588660.335249.7207eragrostis_curvulaTVU0947076.731863.2327
AMTR_s00060p00141700amborella_trichopodaERM9588657.821247.7654camelina_sativaCsa09g003080.174.193661.2903
AMTR_s00060p00141700amborella_trichopodaERM9588665.502853.0726camelina_sativaCsa04g002940.127.523522.3005
AMTR_s00060p00141700amborella_trichopodaERM9588663.547551.8156camelina_sativaCsa06g001660.172.452259.0764
AMTR_s00060p00141700amborella_trichopodaERM9588655.726345.3911selaginella_moellendorffiiEFJ2311677.17662.8627
AMTR_s00060p00141700amborella_trichopodaERM9588655.865945.3911selaginella_moellendorffiiEFJ2017476.628362.2605
AMTR_s00060p00141700amborella_trichopodaERM9588668.994457.6816vitis_viniferaVitvi01g04121_P00176.117163.6364
AMTR_s00060p00141700amborella_trichopodaERM9588665.363152.933eutrema_salsugineumESQ3314475.850961.4263
AMTR_s00060p00141700amborella_trichopodaERM9588660.055950.2793echinochloa_crusgalliscaffold87.242.cds76.785764.2857
AMTR_s00060p00141700amborella_trichopodaERM9588659.916250.419echinochloa_crusgalliscaffold64.187.cds76.607164.4643
AMTR_s00060p00141700amborella_trichopodaERM9588660.195550.6983echinochloa_crusgalliscaffold275.59.cds76.964364.8214
AMTR_s00060p00141700amborella_trichopodaERM9588655.865948.743corchorus_capsularisOMO6070184.566673.7844
AMTR_s00060p00141700amborella_trichopodaERM9588666.201154.0503fraxinus_excelsiorFRAEX38873_v2_000044830.1.cds72.588159.2649
AMTR_s00060p00141700amborella_trichopodaERM9588662.849253.352citrullus_lanatusCla97C09G178390.173.289962.215
AMTR_s00060p00141700amborella_trichopodaERM9588660.055950.1397oryza_nivaraONIVA09G08360.164.564653.9039

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression