Description

Ensembl ID AMTR_s00058p00214800 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 8558 bases Strand Minus strand
Position AmTr_v1.0_scaffold00058 : 4237881 - 4246438 RNA binding domain Ribosomal_L22
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN06703 Ribosomal_L22 PF00237 1.8e-25 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN06703 810 269aa ERN06703

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00058p00214800

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00058p00214800amborella_trichopodaERN0670351.672937.5465papaver_somniferumRZC7170938.935628.2913
AMTR_s00058p00214800amborella_trichopodaERN0670353.159936.4312marchantia_polymorphaPTQ5049151.811635.5072
AMTR_s00058p00214800amborella_trichopodaERN0670373.234260.223ficus_caricaFCD_00017307-RA:cds71.897859.1241
AMTR_s00058p00214800amborella_trichopodaERN0670371.375558.7361beta_vulgarisKMT0497569.818257.4545
AMTR_s00058p00214800amborella_trichopodaERN0670376.579965.7993theobroma_cacaoEOY0852974.909164.3636
AMTR_s00058p00214800amborella_trichopodaERN0670371.003757.9926cucumis_meloMELO3C004760.2.170.479757.5646
AMTR_s00058p00214800amborella_trichopodaERN0670367.65853.9033arabidopsis_thalianaAT1G52370.367.65853.9033
AMTR_s00058p00214800amborella_trichopodaERN0670368.773255.0186arabidopsis_thalianaAT4G28360.168.265754.6125
AMTR_s00058p00214800amborella_trichopodaERN0670373.234262.0818populus_trichocarpaPotri.016G067100.1.v4.170.863360.0719
AMTR_s00058p00214800amborella_trichopodaERN0670371.375557.6208cucumis_sativusKGN6490470.848757.1956
AMTR_s00058p00214800amborella_trichopodaERN0670366.914552.7881brassica_junceacds.BjuB06g47830S51.873240.9222
AMTR_s00058p00214800amborella_trichopodaERN0670367.65853.9033brassica_junceacds.BjuB04g52270S68.421154.5113
AMTR_s00058p00214800amborella_trichopodaERN0670366.17150.9294brassica_napusCDY0029059.136245.5149
AMTR_s00058p00214800amborella_trichopodaERN0670367.286253.9033brassica_napusCDX8689668.560654.9242
AMTR_s00058p00214800amborella_trichopodaERN0670368.401553.1599brassica_napusCDY6622566.909152
AMTR_s00058p00214800amborella_trichopodaERN0670368.773253.1599brassica_napusCDY6622669.029953.3582
AMTR_s00058p00214800amborella_trichopodaERN0670360.594848.3271prunus_persicaONH9475261.278248.8722
AMTR_s00058p00214800amborella_trichopodaERN0670373.977762.4535prunus_persicaONH9583172.363661.0909
AMTR_s00058p00214800amborella_trichopodaERN0670367.65854.6468cajanus_cajanC.cajan_18447.t66.423453.6496
AMTR_s00058p00214800amborella_trichopodaERN0670357.992646.8401malus_domestica_goldenmRNA:MD03G010820047.56138.4146
AMTR_s00058p00214800amborella_trichopodaERN0670371.747260.223malus_domestica_goldenmRNA:MD14G003730070.955959.5588
AMTR_s00058p00214800amborella_trichopodaERN0670359.851349.4424malus_domestica_goldenmRNA:MD06G000960059.629649.2593
AMTR_s00058p00214800amborella_trichopodaERN0670336.431230.4833malus_domestica_goldenmRNA:MD12G003720081.666768.3333
AMTR_s00058p00214800amborella_trichopodaERN0670365.427552.4164glycine_maxKRH0066463.537950.9025
AMTR_s00058p00214800amborella_trichopodaERN0670367.286253.5316glycine_maxKRH4052473.577258.5366
AMTR_s00058p00214800amborella_trichopodaERN0670360.594848.3271prunus_dulcisVVA3381461.509449.0566
AMTR_s00058p00214800amborella_trichopodaERN0670373.605961.71prunus_dulcisVVA1535072.527560.8059
AMTR_s00058p00214800amborella_trichopodaERN0670368.029755.7621medicago_truncatulaAES6007956.13546.0123
AMTR_s00058p00214800amborella_trichopodaERN0670361.338347.2119lupinus_angustifoliusOIW0337772.368455.7018
AMTR_s00058p00214800amborella_trichopodaERN0670359.851347.5836lupinus_angustifoliusOIW2127674.883759.5349
AMTR_s00058p00214800amborella_trichopodaERN0670358.736141.2639physcomitrium_patensPp3c8_16210V3.354.109638.0137
AMTR_s00058p00214800amborella_trichopodaERN0670369.14555.7621phaseolus_vulgarisESW1192366.428653.5714
AMTR_s00058p00214800amborella_trichopodaERN0670362.081849.8141phaseolus_vulgarisESW1192773.568359.0308
AMTR_s00058p00214800amborella_trichopodaERN0670321.189618.5874phaseolus_vulgarisESW0716596.610284.7458
AMTR_s00058p00214800amborella_trichopodaERN0670338.661732.342phaseolus_vulgarisESW1193581.2567.9688
AMTR_s00058p00214800amborella_trichopodaERN0670327.88123.0483pisum_sativumPsat6g152720.1.cds154.744545.2555
AMTR_s00058p00214800amborella_trichopodaERN0670367.286256.5056pisum_sativumPsat6g101760.3.cds66.300455.6777
AMTR_s00058p00214800amborella_trichopodaERN0670370.63256.1338vigna_angularisKOM3718267.857153.9286
AMTR_s00058p00214800amborella_trichopodaERN0670370.260255.3903vigna_angularisKOM5811959.810147.1519
AMTR_s00058p00214800amborella_trichopodaERN0670370.63256.8773vigna_unguiculataVigun05g074200.1.v1.267.857154.6429
AMTR_s00058p00214800amborella_trichopodaERN0670373.234263.5688manihot_esculentaOAY4302371.119161.7329
AMTR_s00058p00214800amborella_trichopodaERN0670370.260259.8513solanum_lycopersicumSolyc04g017680.3.169.741759.4096
AMTR_s00058p00214800amborella_trichopodaERN0670337.918230.855solanum_lycopersicumSolyc03g044440.2.166.666754.2484
AMTR_s00058p00214800amborella_trichopodaERN0670357.992649.0706capsicum_annuumPHT8057258.646649.6241
AMTR_s00058p00214800amborella_trichopodaERN0670369.516755.3903vigna_radiataVradi09g09730.142.533.8636
AMTR_s00058p00214800amborella_trichopodaERN0670368.773254.2751vigna_radiataVradi04g06470.163.139949.8294
AMTR_s00058p00214800amborella_trichopodaERN0670365.055856.8773sesamum_indicumSIN_1007757.t80.275270.1835
AMTR_s00058p00214800amborella_trichopodaERN0670371.003760.223lactuca_sativacds-PLY70824.169.70859.1241
AMTR_s00058p00214800amborella_trichopodaERN0670371.375559.4796helianthus_annuusmRNA:HanXRQr2_Chr17g081914170.07358.3942
AMTR_s00058p00214800amborella_trichopodaERN0670369.14555.0186avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0000329.166.906553.2374
AMTR_s00058p00214800amborella_trichopodaERN0670368.029754.2751avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0002714.166.788353.2847
AMTR_s00058p00214800amborella_trichopodaERN0670368.773254.6468avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0000878.266.071452.5
AMTR_s00058p00214800amborella_trichopodaERN0670355.390347.9554lolium_perennecds.KYUSt_chr2.4833479.679168.984
AMTR_s00058p00214800amborella_trichopodaERN0670367.286253.9033oryza_longistaminataKN539312.1_FGP00365.107952.1583
AMTR_s00058p00214800amborella_trichopodaERN0670368.029754.2751avena_sativa_sangAVESA.00010b.r2.2CG0317280.1.CDS66.788353.2847
AMTR_s00058p00214800amborella_trichopodaERN0670369.14555.0186avena_sativa_sangAVESA.00010b.r2.3DG0522940.1.CDS66.906553.2374
AMTR_s00058p00214800amborella_trichopodaERN0670368.773254.6468avena_sativa_sangAVESA.00010b.r2.3AG0421680.1.CDS66.071452.5
AMTR_s00058p00214800amborella_trichopodaERN0670342.007435.6877solanum_tuberosumPGSC0003DMT40008449568.072357.8313
AMTR_s00058p00214800amborella_trichopodaERN0670368.029753.5316oryza_rufipogonORUFI01G25570.165.827351.7986
AMTR_s00058p00214800amborella_trichopodaERN0670365.799352.4164oryza_brachyanthaOB01G32240.170.517956.1753
AMTR_s00058p00214800amborella_trichopodaERN0670367.65853.9033oryza_glaberrimaORGLA01G0182900.165.467652.1583
AMTR_s00058p00214800amborella_trichopodaERN0670367.65853.9033oryza_punctataOPUNC01G22970.256.521745.0311
AMTR_s00058p00214800amborella_trichopodaERN0670362.825352.0446setaria_italicaKQK8848374.449361.674
AMTR_s00058p00214800amborella_trichopodaERN0670359.479645.3532setaria_italicaKQL0589161.776147.1042
AMTR_s00058p00214800amborella_trichopodaERN0670365.799353.9033setaria_viridisTKV9306951.906242.522
AMTR_s00058p00214800amborella_trichopodaERN0670341.635734.5725setaria_viridisTKV9306683.582169.403
AMTR_s00058p00214800amborella_trichopodaERN0670363.568852.0446sorghum_bicolorKXG3470758.561647.9452
AMTR_s00058p00214800amborella_trichopodaERN0670363.940550.5576triticum_turgidumTRITD0Uv1G003920.162.545549.4545
AMTR_s00058p00214800amborella_trichopodaERN0670363.940550.9294triticum_turgidumTRITD1Av1G005060.156.578945.0658
AMTR_s00058p00214800amborella_trichopodaERN0670366.914553.1599triticum_turgidumTRITD2Bv1G211530.165.217451.8116
AMTR_s00058p00214800amborella_trichopodaERN0670366.542752.7881secale_cerealeSECCE2Rv1G0119070.165.328551.8248
AMTR_s00058p00214800amborella_trichopodaERN0670362.825349.8141secale_cerealeSECCEUnv1G0527140.161.231948.5507
AMTR_s00058p00214800amborella_trichopodaERN0670363.940550.5576triticum_aestivumTraesCS1B02G031500.162.773749.635
AMTR_s00058p00214800amborella_trichopodaERN0670363.568850.5576triticum_aestivumTraesCS1D02G025100.161.956549.2754
AMTR_s00058p00214800amborella_trichopodaERN0670367.65853.9033triticum_aestivumTraesCS2A02G429100.265.467652.1583
AMTR_s00058p00214800amborella_trichopodaERN0670366.17152.0446triticum_aestivumTraesCS2D02G426900.164.028850.3597
AMTR_s00058p00214800amborella_trichopodaERN0670363.940550.9294triticum_aestivumTraesCS1A02G025100.156.578945.0658
AMTR_s00058p00214800amborella_trichopodaERN0670363.19752.0446zea_maysZm00001eb095190_P00249.562740.8163
AMTR_s00058p00214800amborella_trichopodaERN0670355.762147.9554ananas_comosusAco008333.1.mrna180.213968.984
AMTR_s00058p00214800amborella_trichopodaERN0670364.312355.0186chenopodium_quinoaAUR62017549-RA:cds72.689162.1849
AMTR_s00058p00214800amborella_trichopodaERN0670343.494429.7398chara_brauniiGBG7738449.159733.6134
AMTR_s00058p00214800amborella_trichopodaERN0670359.479648.6989corylus_avellanaCav09g06970.t168.965556.4655
AMTR_s00058p00214800amborella_trichopodaERN0670368.029754.2751brachypodium_distachyonKQK0037966.304352.8986
AMTR_s00058p00214800amborella_trichopodaERN0670344.981435.316brachypodium_distachyonPNT6181357.34645.0237
AMTR_s00058p00214800amborella_trichopodaERN0670368.029753.9033oryza_glumipatulaOGLUM01G26520.165.827352.1583
AMTR_s00058p00214800amborella_trichopodaERN0670368.773254.6468oryza_meridionalisOMERI01G20870.266.546852.8777
AMTR_s00058p00214800amborella_trichopodaERN0670369.888559.8513ipomoea_trilobaitb09g12690.t168.613158.7591
AMTR_s00058p00214800amborella_trichopodaERN0670373.605960.223kalanchoe_fedtschenkoiKaladp0666s0026.1.v1.17258.9091
AMTR_s00058p00214800amborella_trichopodaERN0670363.940550.9294triticum_urartuTuG1812S0003338600.01.T0165.648952.2901
AMTR_s00058p00214800amborella_trichopodaERN0670366.914552.4164triticum_urartuTuG1812G0200004818.01.T0164.748250.7194
AMTR_s00058p00214800amborella_trichopodaERN0670374.721263.197eucalyptus_grandisKCW5766373.626462.2711
AMTR_s00058p00214800amborella_trichopodaERN0670372.862559.1078cynara_cardunculusKVH9716171.532858.0292
AMTR_s00058p00214800amborella_trichopodaERN0670367.65856.1338trifolium_pratenseTp57577_TGAC_v2_mRNA3124744.717437.1007
AMTR_s00058p00214800amborella_trichopodaERN0670355.018643.8662gossypium_raimondiiKJB3623868.518554.6296
AMTR_s00058p00214800amborella_trichopodaERN0670372.862563.9405gossypium_raimondiiKJB1182072.058863.2353
AMTR_s00058p00214800amborella_trichopodaERN0670368.773254.6468arabidopsis_lyratafgenesh1_pg.C_scaffold_100395868.518554.4444
AMTR_s00058p00214800amborella_trichopodaERN0670356.133847.9554oryza_barthiiOBART01G22760.180.748768.984
AMTR_s00058p00214800amborella_trichopodaERN0670340.892236.4312asparagus_officinalisONK6926259.782653.2609
AMTR_s00058p00214800amborella_trichopodaERN0670369.888560.223musa_acuminataMa09_p31430.170.41260.6742
AMTR_s00058p00214800amborella_trichopodaERN0670327.137519.3309arabidopsis_hallerig05557.t269.523849.5238
AMTR_s00058p00214800amborella_trichopodaERN0670368.773254.6468arabidopsis_hallerig15151.t168.518554.4444
AMTR_s00058p00214800amborella_trichopodaERN0670359.851349.0706eragrostis_tefEt_3B_030476.CDS66.255154.321
AMTR_s00058p00214800amborella_trichopodaERN0670360.22349.8141eragrostis_tefEt_3A_026107.CDS66.666755.144
AMTR_s00058p00214800amborella_trichopodaERN0670375.092963.9405corymbia_citriodoracds-KAF8014198.173.992763.0037
AMTR_s00058p00214800amborella_trichopodaERN0670372.490762.4535rosa_chinensisPRQ4420271.955761.9926
AMTR_s00058p00214800amborella_trichopodaERN0670370.260260.9665rosa_chinensisPRQ1999972.413862.8353
AMTR_s00058p00214800amborella_trichopodaERN0670356.877346.4684rosa_chinensisPRQ3594163.223151.6529
AMTR_s00058p00214800amborella_trichopodaERN0670374.721263.5688juglans_regiacds.Jr08_09410_p173.357762.4088
AMTR_s00058p00214800amborella_trichopodaERN0670374.721263.5688juglans_regiacds.Jr08_09420_p173.357762.4088
AMTR_s00058p00214800amborella_trichopodaERN0670359.851351.3011saccharum_spontaneumSspon.02G0022270-3D-mRNA-1:cds79.70368.3168
AMTR_s00058p00214800amborella_trichopodaERN0670365.799352.7881saccharum_spontaneumSspon.02G0022270-2C-mRNA-1:cds60.824748.7973
AMTR_s00058p00214800amborella_trichopodaERN0670363.568853.1599saccharum_spontaneumSspon.02G0022270-1A-mRNA-1:cds58.163348.6395
AMTR_s00058p00214800amborella_trichopodaERN0670354.646845.3532triticum_dicoccoidesTRIDC2BG065650.178.609665.2406
AMTR_s00058p00214800amborella_trichopodaERN0670334.944229.368triticum_dicoccoidesTRIDC2AG061790.159.493750
AMTR_s00058p00214800amborella_trichopodaERN0670367.286253.9033brassica_oleraceaBo3g107560.168.560654.9242
AMTR_s00058p00214800amborella_trichopodaERN0670368.029752.7881brassica_oleraceaBo2g164170.16046.5574
AMTR_s00058p00214800amborella_trichopodaERN0670368.029753.5316oryza_indicaBGIOSGA003995-PA65.827351.7986
AMTR_s00058p00214800amborella_trichopodaERN0670369.14557.2491dioscorea_rotundataDRNTG_29165.169.40357.4627
AMTR_s00058p00214800amborella_trichopodaERN0670368.029753.5316leersia_perrieriLPERR01G19530.148.412738.0952
AMTR_s00058p00214800amborella_trichopodaERN0670371.747260.5948olea_europaeaOE9A027451C470.69659.707
AMTR_s00058p00214800amborella_trichopodaERN0670372.490761.3383actinidia_chinensisPSS1584674.144562.7376
AMTR_s00058p00214800amborella_trichopodaERN0670356.877348.6989prunus_aviumPav_sc0000440.1_g270.1.mk:mrna82.702770.8108
AMTR_s00058p00214800amborella_trichopodaERN0670360.966548.6989prunus_aviumPav_sc0000268.1_g200.1.mk:mrna61.886849.434
AMTR_s00058p00214800amborella_trichopodaERN0670375.464763.5688quercus_subercds-POE50452.171.731460.424
AMTR_s00058p00214800amborella_trichopodaERN0670373.234262.0818quercus_subercds-POE85293.171.119160.2888
AMTR_s00058p00214800amborella_trichopodaERN0670371.747260.223nicotiana_attenuataOIS9729471.217759.7786
AMTR_s00058p00214800amborella_trichopodaERN0670375.464765.4275citrus_clementinaESR4327675.185265.1852
AMTR_s00058p00214800amborella_trichopodaERN0670367.286252.4164brassica_rapa_ro18A06p036170.1_BraROA.166.544151.8382
AMTR_s00058p00214800amborella_trichopodaERN0670367.65852.7881brassica_rapa_ro18A02p057890.1_BraROA.157.594944.9367
AMTR_s00058p00214800amborella_trichopodaERN0670369.888559.8513daucus_carotaKZM9919069.888559.8513
AMTR_s00058p00214800amborella_trichopodaERN0670341.635734.2007nymphaea_colorataNC9G0092290.1:cds60.869650
AMTR_s00058p00214800amborella_trichopodaERN0670372.862561.71coffea_canephoraCDP1057371.532860.5839
AMTR_s00058p00214800amborella_trichopodaERN0670360.966549.0706aegilops_tauschiiAET1Gv20054200.272.566458.4071
AMTR_s00058p00214800amborella_trichopodaERN0670366.17152.4164aegilops_tauschiiAET2Gv20948200.164.028850.7194
AMTR_s00058p00214800amborella_trichopodaERN0670373.977763.197pistacia_veracds-EVM0006899.172.627762.0438
AMTR_s00058p00214800amborella_trichopodaERN0670328.252822.3048pistacia_veracds-EVM0026966.160.848
AMTR_s00058p00214800amborella_trichopodaERN0670322.304819.7026pistacia_veracds-EVM0006938.185.714375.7143
AMTR_s00058p00214800amborella_trichopodaERN0670368.029754.2751digitaria_exilisDexi5A01G0020330.1:cds67.03353.4799
AMTR_s00058p00214800amborella_trichopodaERN0670368.401554.2751digitaria_exilisDexi5B01G0020490.1:cds67.399353.4799
AMTR_s00058p00214800amborella_trichopodaERN0670368.029753.5316oryza_sativaOs01t0616500-0165.827351.7986
AMTR_s00058p00214800amborella_trichopodaERN0670367.65853.1599panicum_halliiPUZ5582666.666752.381
AMTR_s00058p00214800amborella_trichopodaERN0670375.092963.5688quercus_lobataQL07p027111:mrna72.661961.5108
AMTR_s00058p00214800amborella_trichopodaERN0670373.977762.8253quercus_lobataQL03p055008:mrna71.326260.5735
AMTR_s00058p00214800amborella_trichopodaERN0670363.19751.6729eragrostis_curvulaTVU2229058.823548.0969
AMTR_s00058p00214800amborella_trichopodaERN0670366.914553.1599camelina_sativaCsa17g092380.149.723839.5028
AMTR_s00058p00214800amborella_trichopodaERN0670366.914554.6468camelina_sativaCsa03g059420.166.914554.6468
AMTR_s00058p00214800amborella_trichopodaERN0670366.914554.2751camelina_sativaCsa14g061670.144.444436.0494
AMTR_s00058p00214800amborella_trichopodaERN0670346.096731.5985selaginella_moellendorffiiEFJ0835959.615440.8654
AMTR_s00058p00214800amborella_trichopodaERN0670346.096731.5985selaginella_moellendorffiiEFJ1526659.615440.8654
AMTR_s00058p00214800amborella_trichopodaERN0670374.721262.8253vitis_viniferaVitvi08g00201_P00174.169762.3616
AMTR_s00058p00214800amborella_trichopodaERN0670368.401554.6468eutrema_salsugineumESQ3167634.137327.2727
AMTR_s00058p00214800amborella_trichopodaERN0670368.773253.9033echinochloa_crusgalliscaffold11.467.cds67.765653.1136
AMTR_s00058p00214800amborella_trichopodaERN0670368.773254.2751echinochloa_crusgalliscaffold257.6.cds66.78752.7076
AMTR_s00058p00214800amborella_trichopodaERN0670368.773254.2751echinochloa_crusgalliscaffold26.620.cds67.765653.4799
AMTR_s00058p00214800amborella_trichopodaERN0670375.464763.5688corchorus_capsularisOMO6918072.759961.2903
AMTR_s00058p00214800amborella_trichopodaERN0670371.747260.5948fraxinus_excelsiorFRAEX38873_v2_000265720.1.cds70.69659.707
AMTR_s00058p00214800amborella_trichopodaERN0670370.63257.9926citrullus_lanatusCla97C01G011760.170.110757.5646
AMTR_s00058p00214800amborella_trichopodaERN0670368.029753.5316oryza_nivaraONIVA01G25930.165.827351.7986

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression