Description

Ensembl ID AMTR_s00058p00204390 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 564 bases Strand Minus strand
Position AmTr_v1.0_scaffold00058 : 3836326 - 3836889 RNA binding domain eIF3g , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN06686 eIF3g PF12353 1.3e-10 1
ERN06686 RRM_1 PF00076 6.6e-21 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN06686 564 187aa ERN06686

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00058p00204390amborella_trichopodaERN1241556.756854.0541amborella_trichopodaERN0668689.839685.5615
AMTR_s00058p00204390amborella_trichopodaERN066875.357144.46429amborella_trichopodaERN066863.208562.6738

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00058p00204390amborella_trichopodaERN0668652.406437.4332chondrus_crispusCDF3456731.818222.7273
AMTR_s00058p00204390amborella_trichopodaERN0668679.679170.5882papaver_somniferumRZC7990050.337844.5946
AMTR_s00058p00204390amborella_trichopodaERN0668679.679171.6578papaver_somniferumRZC6184950.337845.2703
AMTR_s00058p00204390amborella_trichopodaERN0668679.679171.6578papaver_somniferumRZC5398650.337845.2703
AMTR_s00058p00204390amborella_trichopodaERN0668675.401159.3583marchantia_polymorphaPTQ3708849.128938.676
AMTR_s00058p00204390amborella_trichopodaERN0668674.866358.8235marchantia_polymorphaPTQ2929748.780538.3275
AMTR_s00058p00204390amborella_trichopodaERN0668679.679170.5882ficus_caricaFCD_00002200-RA:cds51.202745.3608
AMTR_s00058p00204390amborella_trichopodaERN0668681.818268.984beta_vulgarisKMT0517253.12544.7917
AMTR_s00058p00204390amborella_trichopodaERN0668686.096374.3316theobroma_cacaoEOY1802754.208846.8013
AMTR_s00058p00204390amborella_trichopodaERN0668684.49277.0053theobroma_cacaoEOY3392654.861150
AMTR_s00058p00204390amborella_trichopodaERN0668658.823543.3155chlamydomonas_reinhardtiiPNW8199638.869328.6219
AMTR_s00058p00204390amborella_trichopodaERN0668685.561575.9358cucumis_meloMELO3C001947.2.155.363349.1349
AMTR_s00058p00204390amborella_trichopodaERN0668683.957275.4011cucumis_meloMELO3C023779.2.154.513948.9583
AMTR_s00058p00204390amborella_trichopodaERN0668680.748770.0535arabidopsis_thalianaAT3G11400.247.040540.81
AMTR_s00058p00204390amborella_trichopodaERN0668674.866361.4973arabidopsis_thalianaAT5G06000.145.454537.3377
AMTR_s00058p00204390amborella_trichopodaERN0668684.49274.8663populus_trichocarpaPotri.010G199000.2.v4.153.741547.619
AMTR_s00058p00204390amborella_trichopodaERN0668686.096374.8663populus_trichocarpaPotri.008G060000.1.v4.154.948847.7816
AMTR_s00058p00204390amborella_trichopodaERN0668685.561576.4706cucumis_sativusKGN6396055.363349.481
AMTR_s00058p00204390amborella_trichopodaERN0668683.422574.8663cucumis_sativusKGN5773654.166748.6111
AMTR_s00058p00204390amborella_trichopodaERN0668681.818271.123brassica_junceacds.BjuA05g32720S52.218445.3925
AMTR_s00058p00204390amborella_trichopodaERN0668682.887771.6578brassica_junceacds.BjuB07g20740S53.448346.2069
AMTR_s00058p00204390amborella_trichopodaERN0668681.283470.5882brassica_junceacds.BjuA01g04790S51.700744.898
AMTR_s00058p00204390amborella_trichopodaERN0668682.887771.123brassica_junceacds.BjuA03g26660S52.721145.2381
AMTR_s00058p00204390amborella_trichopodaERN0668671.12356.1497brassica_junceacds.BjuA10g26540S5039.4737
AMTR_s00058p00204390amborella_trichopodaERN0668681.818269.5187brassica_junceacds.BjuB01g06210S52.218444.3686
AMTR_s00058p00204390amborella_trichopodaERN0668681.818270.5882brassica_napusCDY3633151.689244.5946
AMTR_s00058p00204390amborella_trichopodaERN0668682.887771.123brassica_napusCDY5332252.721145.2381
AMTR_s00058p00204390amborella_trichopodaERN0668669.518758.2888brassica_napusCDY3633273.863661.9318
AMTR_s00058p00204390amborella_trichopodaERN0668682.887771.123brassica_napusCDX7387852.721145.2381
AMTR_s00058p00204390amborella_trichopodaERN0668652.941243.8503brassica_napusCDY6725666.891955.4054
AMTR_s00058p00204390amborella_trichopodaERN0668682.352971.123brassica_napusCDY0853148.12541.5625
AMTR_s00058p00204390amborella_trichopodaERN0668682.352971.123brassica_napusCDY0101652.559745.3925
AMTR_s00058p00204390amborella_trichopodaERN0668681.283468.984prunus_persicaONI0011751.700743.8776
AMTR_s00058p00204390amborella_trichopodaERN0668686.63175.9358cajanus_cajanC.cajan_20825.t55.862148.9655
AMTR_s00058p00204390amborella_trichopodaERN0668679.144468.4492malus_domestica_goldenmRNA:MD11G007360050.511943.686
AMTR_s00058p00204390amborella_trichopodaERN0668678.074967.3797malus_domestica_goldenmRNA:MD03G007010049.829443.0034
AMTR_s00058p00204390amborella_trichopodaERN0668686.096375.4011glycine_maxKRG9925855.517248.6207
AMTR_s00058p00204390amborella_trichopodaERN0668685.026775.4011glycine_maxKRH4574054.827648.6207
AMTR_s00058p00204390amborella_trichopodaERN0668681.283468.4492prunus_dulcisVVA2980251.700743.5374
AMTR_s00058p00204390amborella_trichopodaERN0668685.026773.262medicago_truncatulaAET0559354.452146.9178
AMTR_s00058p00204390amborella_trichopodaERN0668673.796862.0321medicago_truncatulaKEH1891749.285741.4286
AMTR_s00058p00204390amborella_trichopodaERN0668683.422571.6578lupinus_angustifoliusOIV9309053.608246.0481
AMTR_s00058p00204390amborella_trichopodaERN0668682.352972.7273lupinus_angustifoliusOIW1054252.739746.5753
AMTR_s00058p00204390amborella_trichopodaERN0668683.957271.123lupinus_angustifoliusOIW1434955.47746.9965
AMTR_s00058p00204390amborella_trichopodaERN0668683.957271.123lupinus_angustifoliusOIV9391555.673847.1631
AMTR_s00058p00204390amborella_trichopodaERN0668671.12357.754physcomitrium_patensPp3c9_17550V3.146.180637.5
AMTR_s00058p00204390amborella_trichopodaERN0668672.727359.3583physcomitrium_patensPp3c15_21950V3.147.222238.5417
AMTR_s00058p00204390amborella_trichopodaERN0668646.524135.8289physcomitrium_patensPp3c9_20330V3.153.048840.8537
AMTR_s00058p00204390amborella_trichopodaERN0668685.561575.4011phaseolus_vulgarisESW2565955.172448.6207
AMTR_s00058p00204390amborella_trichopodaERN0668683.957273.7968phaseolus_vulgarisESW2301753.583647.099
AMTR_s00058p00204390amborella_trichopodaERN0668685.026771.6578pisum_sativumPsat7g003600.1.cds54.827646.2069
AMTR_s00058p00204390amborella_trichopodaERN0668685.026771.123pisum_sativumPsat7g003640.1.cds54.827645.8621
AMTR_s00058p00204390amborella_trichopodaERN0668683.957274.8663vigna_angularisKOM5615331.975628.5132
AMTR_s00058p00204390amborella_trichopodaERN0668683.422573.7968vigna_angularisKOM5689953.608247.4227
AMTR_s00058p00204390amborella_trichopodaERN0668683.957274.3316vigna_unguiculataVigun04g089500.1.v1.254.137947.931
AMTR_s00058p00204390amborella_trichopodaERN0668683.957274.8663vigna_unguiculataVigun04g193800.1.v1.253.951948.11
AMTR_s00058p00204390amborella_trichopodaERN0668685.561576.4706manihot_esculentaOAY3856954.237348.4746
AMTR_s00058p00204390amborella_trichopodaERN0668684.49274.8663manihot_esculentaOAY4614353.741547.619
AMTR_s00058p00204390amborella_trichopodaERN0668683.422574.3316solanum_lycopersicumSolyc08g074790.3.152.881447.1186
AMTR_s00058p00204390amborella_trichopodaERN0668680.213972.7273solanum_lycopersicumSolyc03g096680.2.150.847546.1017
AMTR_s00058p00204390amborella_trichopodaERN0668683.957274.8663capsicum_annuumPHT9326653.401447.619
AMTR_s00058p00204390amborella_trichopodaERN0668684.49274.3316sesamum_indicumSIN_1022738.t54.295547.7663
AMTR_s00058p00204390amborella_trichopodaERN0668666.844957.2192lactuca_sativacds-PLY89098.145.787539.1941
AMTR_s00058p00204390amborella_trichopodaERN0668679.144467.3797lactuca_sativacds-PLY74857.151.748344.0559
AMTR_s00058p00204390amborella_trichopodaERN0668679.144467.9144lactuca_sativacds-PLY63600.151.211143.9446
AMTR_s00058p00204390amborella_trichopodaERN0668681.818273.262helianthus_annuusmRNA:HanXRQr2_Chr15g072118152.397346.9178
AMTR_s00058p00204390amborella_trichopodaERN0668680.213972.7273solanum_tuberosumPGSC0003DMT40004313051.194546.4164
AMTR_s00058p00204390amborella_trichopodaERN0668683.422574.3316solanum_tuberosumPGSC0003DMT40007732452.881447.1186
AMTR_s00058p00204390amborella_trichopodaERN0668650.802132.0856caenorhabditis_elegansF22B5.2a.136.259522.9008
AMTR_s00058p00204390amborella_trichopodaERN0668656.149738.5027drosophila_melanogasterFBpp007043039.033526.7658
AMTR_s00058p00204390amborella_trichopodaERN0668658.288836.8984drosophila_melanogasterFBpp008329339.926725.2747
AMTR_s00058p00204390amborella_trichopodaERN0668664.705949.7326homo_sapiensENSP0000025310837.812529.0625
AMTR_s00058p00204390amborella_trichopodaERN0668655.61539.5722saccharomyces_cerevisiaeYDR429C37.956227.0073
AMTR_s00058p00204390amborella_trichopodaERN0668680.213968.984chenopodium_quinoaAUR62001728-RA:cds53.003545.583
AMTR_s00058p00204390amborella_trichopodaERN0668680.213968.984chenopodium_quinoaAUR62020047-RA:cds53.191545.7447
AMTR_s00058p00204390amborella_trichopodaERN0668673.26256.6845chara_brauniiGBG6177446.757736.1775
AMTR_s00058p00204390amborella_trichopodaERN0668669.518759.893arabis_alpinaKFK2499647.970541.3284
AMTR_s00058p00204390amborella_trichopodaERN0668680.748768.984arabis_alpinaKFK3850351.535844.0273
AMTR_s00058p00204390amborella_trichopodaERN0668686.63174.8663corylus_avellanaCav10g12800.t149.693342.9448
AMTR_s00058p00204390amborella_trichopodaERN0668683.957272.7273ipomoea_trilobaitb12g23180.t153.767146.5753
AMTR_s00058p00204390amborella_trichopodaERN0668683.957274.8663kalanchoe_fedtschenkoiKaladp0101s0069.1.v1.154.703848.7805
AMTR_s00058p00204390amborella_trichopodaERN0668686.096374.8663kalanchoe_fedtschenkoiKaladp0041s0043.1.v1.155.517248.2759
AMTR_s00058p00204390amborella_trichopodaERN0668651.871736.3636galdieria_sulphurariaEME2640533.448323.4483
AMTR_s00058p00204390amborella_trichopodaERN0668640.10735.8289eucalyptus_grandisKCW6558280.645272.043
AMTR_s00058p00204390amborella_trichopodaERN0668648.663143.3155eucalyptus_grandisKCW6558692.857182.6531
AMTR_s00058p00204390amborella_trichopodaERN0668660.962645.9893cyanidioschyzon_merolaeCMH159CT31.318723.6264
AMTR_s00058p00204390amborella_trichopodaERN0668680.213968.4492cynara_cardunculusKVI1194145.454538.7879
AMTR_s00058p00204390amborella_trichopodaERN0668681.818271.123trifolium_pratenseTp57577_TGAC_v2_mRNA148853.12546.1806
AMTR_s00058p00204390amborella_trichopodaERN0668672.727357.754trifolium_pratenseTp57577_TGAC_v2_mRNA451948.571438.5714
AMTR_s00058p00204390amborella_trichopodaERN0668685.561574.3316gossypium_raimondiiKJB7404755.172447.931
AMTR_s00058p00204390amborella_trichopodaERN0668685.026776.4706gossypium_raimondiiKJB199965347.6667
AMTR_s00058p00204390amborella_trichopodaERN0668685.026774.3316gossypium_raimondiiKJB6761650.476244.127
AMTR_s00058p00204390amborella_trichopodaERN0668610.16048.02139asparagus_officinalisONK6669213.571410.7143
AMTR_s00058p00204390amborella_trichopodaERN0668673.26262.5668arabidopsis_hallerig15523.t148.070241.0526
AMTR_s00058p00204390amborella_trichopodaERN0668680.748769.5187arabidopsis_hallerig11547.t151.360544.2177
AMTR_s00058p00204390amborella_trichopodaERN0668647.058839.5722arabidopsis_hallerig29323.t1.cds169.291358.2677
AMTR_s00058p00204390amborella_trichopodaERN0668680.748768.984arabidopsis_hallerig05898.t151.186443.7288
AMTR_s00058p00204390amborella_trichopodaERN066868.021396.41711arabidopsis_hallerig11548.t1.cds111.11118.88889
AMTR_s00058p00204390amborella_trichopodaERN0668683.422575.9358corymbia_citriodoracds-KAF8022103.153.424748.6301
AMTR_s00058p00204390amborella_trichopodaERN0668682.887768.984rosa_chinensisPRQ3421952.542443.7288
AMTR_s00058p00204390amborella_trichopodaERN0668685.561576.4706juglans_regiacds.Jr14_10290_p149.382744.1358
AMTR_s00058p00204390amborella_trichopodaERN066865.347594.27807juglans_regiacds.Jr05_08020_p18.264466.61157
AMTR_s00058p00204390amborella_trichopodaERN0668686.096374.3316juglans_regiacds.Jr05_08010_p155.517247.931
AMTR_s00058p00204390amborella_trichopodaERN0668682.887771.123brassica_oleraceaBo3g064160.152.721145.2381
AMTR_s00058p00204390amborella_trichopodaERN0668682.352971.123brassica_oleraceaBo5g136610.152.559745.3925
AMTR_s00058p00204390amborella_trichopodaERN0668662.032148.6631brassica_oleraceaBo9g176640.15039.2241
AMTR_s00058p00204390amborella_trichopodaERN0668681.283470.5882brassica_oleraceaBo1g141080.151.700744.898
AMTR_s00058p00204390amborella_trichopodaERN0668680.748770.0535olea_europaeaOE9A086139C152.430645.4861
AMTR_s00058p00204390amborella_trichopodaERN0668685.561576.4706olea_europaeaOE9A077388C154.421848.6395
AMTR_s00058p00204390amborella_trichopodaERN0668678.609665.7754prunus_aviumPav_sc0001663.1_g290.1.mk:mrna78.191565.4255
AMTR_s00058p00204390amborella_trichopodaERN0668671.12362.5668quercus_subercds-POF00708.146.341540.7666
AMTR_s00058p00204390amborella_trichopodaERN0668668.98459.893quercus_subercds-POF00706.160.849152.8302
AMTR_s00058p00204390amborella_trichopodaERN0668662.032153.4759quercus_subercds-POF00707.182.269570.922
AMTR_s00058p00204390amborella_trichopodaERN0668658.823548.1283nicotiana_attenuataOIS9911534.482828.2132
AMTR_s00058p00204390amborella_trichopodaERN0668685.561576.4706citrus_clementinaESR3815654.607548.8055
AMTR_s00058p00204390amborella_trichopodaERN0668680.213969.5187brassica_rapa_ro18A01p053870.1_BraROA.123.961720.7668
AMTR_s00058p00204390amborella_trichopodaERN0668671.12357.754brassica_rapa_ro18A10p037440.1_BraROA.15040.6015
AMTR_s00058p00204390amborella_trichopodaERN0668682.887771.123brassica_rapa_ro18A03p039150.1_BraROA.152.721145.2381
AMTR_s00058p00204390amborella_trichopodaERN0668680.748769.5187daucus_carotaKZN0298351.013543.9189
AMTR_s00058p00204390amborella_trichopodaERN0668681.283471.6578nymphaea_colorataNC6G0041360.1:cds51.351445.2703
AMTR_s00058p00204390amborella_trichopodaERN0668670.053556.6845ostreococcus_lucimarinusABO9660449.621240.1515
AMTR_s00058p00204390amborella_trichopodaERN0668682.352973.7968coffea_canephoraCDP0911053.103447.5862
AMTR_s00058p00204390amborella_trichopodaERN0668685.561577.5401pistacia_veracds-EVM0012534.154.607549.4881
AMTR_s00058p00204390amborella_trichopodaERN0668671.657861.4973quercus_lobataQL08p061462:mrna44.518338.206
AMTR_s00058p00204390amborella_trichopodaERN0668671.657861.4973quercus_lobataQL08p061495:mrna46.689940.0697
AMTR_s00058p00204390amborella_trichopodaERN0668675.935864.1711camelina_sativaCsa19g015490.154.198545.8015
AMTR_s00058p00204390amborella_trichopodaERN0668668.98452.4064camelina_sativaCsa07g044180.151.639.2
AMTR_s00058p00204390amborella_trichopodaERN0668673.26259.893camelina_sativaCsa11g012680.136.147829.5515
AMTR_s00058p00204390amborella_trichopodaERN0668673.26258.8235camelina_sativaCsa10g011830.145.514936.5448
AMTR_s00058p00204390amborella_trichopodaERN0668680.213968.4492camelina_sativaCsa15g015130.151.546443.9863
AMTR_s00058p00204390amborella_trichopodaERN0668664.171152.4064camelina_sativaCsa08g058500.165.573853.5519
AMTR_s00058p00204390amborella_trichopodaERN0668672.727358.2888camelina_sativaCsa12g016470.148.571438.9286
AMTR_s00058p00204390amborella_trichopodaERN0668662.566853.4759camelina_sativaCsa19g015480.145.525338.9105
AMTR_s00058p00204390amborella_trichopodaERN0668679.679167.9144camelina_sativaCsa01g012440.151.202743.6426
AMTR_s00058p00204390amborella_trichopodaERN0668673.796857.754selaginella_moellendorffiiEFJ1114948.083637.6307
AMTR_s00058p00204390amborella_trichopodaERN0668673.796857.754selaginella_moellendorffiiEFJ0518848.083637.6307
AMTR_s00058p00204390amborella_trichopodaERN0668666.844950.8021selaginella_moellendorffiiEFJ1939443.55433.101
AMTR_s00058p00204390amborella_trichopodaERN0668682.887774.3316vitis_viniferaVitvi13g02003_P00151.49546.1794
AMTR_s00058p00204390amborella_trichopodaERN0668684.49271.6578vitis_viniferaVitvi08g01256_P00153.924945.7338
AMTR_s00058p00204390amborella_trichopodaERN0668688.770180.2139vitis_viniferaVitvi06g00535_P00156.081150.6757
AMTR_s00058p00204390amborella_trichopodaERN0668661.497349.7326eutrema_salsugineumESQ4051667.251554.386
AMTR_s00058p00204390amborella_trichopodaERN0668668.98455.615eutrema_salsugineumESQ5440846.909137.8182
AMTR_s00058p00204390amborella_trichopodaERN0668680.748770.0535eutrema_salsugineumESQ4890451.360544.5578
AMTR_s00058p00204390amborella_trichopodaERN0668683.957275.4011corchorus_capsularisOMO6198853.951948.4536
AMTR_s00058p00204390amborella_trichopodaERN0668684.49272.7273corchorus_capsularisOMO5909653.198745.7912
AMTR_s00058p00204390amborella_trichopodaERN0668684.49274.8663fraxinus_excelsiorFRAEX38873_v2_000129770.1.cds53.741547.619
AMTR_s00058p00204390amborella_trichopodaERN0668685.026774.3316fraxinus_excelsiorFRAEX38873_v2_000148960.2.cds55.208348.2639
AMTR_s00058p00204390amborella_trichopodaERN0668685.561577.0053citrullus_lanatusCla97C04G079610.155.555650
AMTR_s00058p00204390amborella_trichopodaERN0668683.957274.8663citrullus_lanatusCla97C05G093890.154.513948.6111

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression