Description

Ensembl ID AMTR_s00049p00227500 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 10921 bases Strand Plus strand
Position AmTr_v1.0_scaffold00049 : 4803661 - 4814581 RNA binding domain DUF1325
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN13844 DUF1325 PF07039 3.9e-33 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN13844 828 275aa ERN13844

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00049p00227500

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00049p00227500amborella_trichopodaERN1384449.454540papaver_somniferumRZC5956864.45552.1327
AMTR_s00049p00227500amborella_trichopodaERN1384442.545538.5455papaver_somniferumRZC6039969.230862.7219
AMTR_s00049p00227500amborella_trichopodaERN1384445.454526.9091marchantia_polymorphaPTQ4698635.919521.2644
AMTR_s00049p00227500amborella_trichopodaERN1384476.727360.7273beta_vulgarisKMS9552577.859861.6236
AMTR_s00049p00227500amborella_trichopodaERN1384478.181864.7273theobroma_cacaoEOY0255280.223966.4179
AMTR_s00049p00227500amborella_trichopodaERN1384473.090960.3636cucumis_meloMELO3C026589.2.176.425963.1179
AMTR_s00049p00227500amborella_trichopodaERN1384468.727353.0909arabidopsis_thalianaAT5G40550.362.790748.505
AMTR_s00049p00227500amborella_trichopodaERN1384476.363661.8182arabidopsis_thalianaAT3G27460.477.205962.5
AMTR_s00049p00227500amborella_trichopodaERN1384478.545565.4545populus_trichocarpaPotri.001G342700.1.v4.180.297466.9145
AMTR_s00049p00227500amborella_trichopodaERN1384475.636460cucumis_sativusKGN5971562.462549.5495
AMTR_s00049p00227500amborella_trichopodaERN1384439.636433.8182brassica_junceacds.BjuA02g07480S76.223865.035
AMTR_s00049p00227500amborella_trichopodaERN1384476.363660.7273brassica_napusCDY1371477.777861.8519
AMTR_s00049p00227500amborella_trichopodaERN1384476.363660.7273brassica_napusCDX8369677.777861.8519
AMTR_s00049p00227500amborella_trichopodaERN1384441.818234.5455brassica_napusCDY0397955.825246.1165
AMTR_s00049p00227500amborella_trichopodaERN1384474.909158.5455brassica_napusCDY3414466.883152.2727
AMTR_s00049p00227500amborella_trichopodaERN138448063.6364prunus_persicaONI1972981.180864.5756
AMTR_s00049p00227500amborella_trichopodaERN1384475.636460.3636cajanus_cajanC.cajan_02784.t72.222257.6389
AMTR_s00049p00227500amborella_trichopodaERN1384477.818265.8182malus_domestica_goldenmRNA:MD09G002030078.966866.7897
AMTR_s00049p00227500amborella_trichopodaERN1384477.818264malus_domestica_goldenmRNA:MD17G001930063.501552.2255
AMTR_s00049p00227500amborella_trichopodaERN1384477.090961.4545glycine_maxKRG9401578.228862.3616
AMTR_s00049p00227500amborella_trichopodaERN1384476.363661.8182glycine_maxRCW1896077.490862.7306
AMTR_s00049p00227500amborella_trichopodaERN1384479.636463.6364prunus_dulcisVVA1780880.811864.5756
AMTR_s00049p00227500amborella_trichopodaERN1384449.090939.2727medicago_truncatulaKEH2210434.26427.4112
AMTR_s00049p00227500amborella_trichopodaERN1384474.909160.7273medicago_truncatulaKEH2210775.457961.1722
AMTR_s00049p00227500amborella_trichopodaERN1384476.363661.0909lupinus_angustifoliusOIW0938576.08760.8696
AMTR_s00049p00227500amborella_trichopodaERN138447660.3636lupinus_angustifoliusOIW1443177.695261.71
AMTR_s00049p00227500amborella_trichopodaERN1384465.454548.3636physcomitrium_patensPp3c21_7830V3.163.380346.831
AMTR_s00049p00227500amborella_trichopodaERN1384464.727349.0909physcomitrium_patensPp3c18_8800V3.364.963549.2701
AMTR_s00049p00227500amborella_trichopodaERN1384476.727358.9091phaseolus_vulgarisESW3375677.859859.7786
AMTR_s00049p00227500amborella_trichopodaERN138447661.0909pisum_sativumPsat3g166200.2.cds77.695262.4535
AMTR_s00049p00227500amborella_trichopodaERN1384469.818254.9091vigna_angularisKOM3845274.418658.5271
AMTR_s00049p00227500amborella_trichopodaERN1384475.636459.2727vigna_unguiculataVigun01g064200.1.v1.276.752860.1476
AMTR_s00049p00227500amborella_trichopodaERN1384478.545563.6364manihot_esculentaOAY2563980.297465.0558
AMTR_s00049p00227500amborella_trichopodaERN1384479.272764.3636manihot_esculentaOAY2953481.040965.7993
AMTR_s00049p00227500amborella_trichopodaERN1384474.545559.2727solanum_lycopersicumSolyc02g093490.3.176.492560.8209
AMTR_s00049p00227500amborella_trichopodaERN1384466.545550.1818capsicum_annuumPHT9197352.586239.6552
AMTR_s00049p00227500amborella_trichopodaERN1384466.909151.2727vigna_radiataVradi0007s00960.165.480450.1779
AMTR_s00049p00227500amborella_trichopodaERN1384478.545564lactuca_sativacds-PLY72775.180.59765.6716
AMTR_s00049p00227500amborella_trichopodaERN1384478.545562.5455helianthus_annuusmRNA:HanXRQr2_Chr15g070963180.898964.4195
AMTR_s00049p00227500amborella_trichopodaERN1384479.272762.5455helianthus_annuusmRNA:HanXRQr2_Chr09g038678181.040963.9405
AMTR_s00049p00227500amborella_trichopodaERN1384467.272752.7273avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0002299.361.872948.495
AMTR_s00049p00227500amborella_trichopodaERN1384466.909152.3636avena_sativa_ot3098cds.AVESA.00001b.r3.7Cg0002647.465.949851.6129
AMTR_s00049p00227500amborella_trichopodaERN1384467.272752.7273avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0001288.57458
AMTR_s00049p00227500amborella_trichopodaERN1384466.909152.3636lolium_perennecds.KYUSt_chr5.2269374.193658.0645
AMTR_s00049p00227500amborella_trichopodaERN1384477.090961.8182avena_sativa_sangAVESA.00010b.r2.7CG0664030.1.CDS75.177360.2837
AMTR_s00049p00227500amborella_trichopodaERN1384474.545558.9091solanum_tuberosumPGSC0003DMT40003283676.492560.4478
AMTR_s00049p00227500amborella_trichopodaERN1384467.636452oryza_rufipogonORUFI12G10040.263.265348.6395
AMTR_s00049p00227500amborella_trichopodaERN1384468.363653.8182oryza_brachyanthaOB12G17750.18062.9787
AMTR_s00049p00227500amborella_trichopodaERN138447660.7273oryza_glaberrimaORGLA12G0085800.173.333358.5965
AMTR_s00049p00227500amborella_trichopodaERN1384468.363653.4545oryza_punctataOPUNC12G08290.351.366140.1639
AMTR_s00049p00227500amborella_trichopodaERN1384474.545557.8182setaria_italicaKQL1633674.817558.0292
AMTR_s00049p00227500amborella_trichopodaERN1384474.909158.1818setaria_viridisTKW2840474.100757.554
AMTR_s00049p00227500amborella_trichopodaERN1384474.909158.1818sorghum_bicolorOQU7906473.049656.7376
AMTR_s00049p00227500amborella_trichopodaERN1384477.818260.3636triticum_turgidumTRITD5Bv1G064320.375.352158.4507
AMTR_s00049p00227500amborella_trichopodaERN1384477.818260.3636triticum_turgidumTRITD5Av1G085030.675.352158.4507
AMTR_s00049p00227500amborella_trichopodaERN1384477.818260.7273secale_cerealeSECCE5Rv1G0314140.175.352158.8028
AMTR_s00049p00227500amborella_trichopodaERN1384477.818260.3636triticum_aestivumTraesCS5D02G119400.175.352158.4507
AMTR_s00049p00227500amborella_trichopodaERN1384477.818260.3636triticum_aestivumTraesCS5A02G119000.175.352158.4507
AMTR_s00049p00227500amborella_trichopodaERN1384477.818260.3636triticum_aestivumTraesCS5B02G112600.175.352158.4507
AMTR_s00049p00227500amborella_trichopodaERN1384477.090958.9091zea_maysZm00001eb409000_P00174.647957.0423
AMTR_s00049p00227500amborella_trichopodaERN1384425.090912caenorhabditis_elegansY17G9B.8.129.237313.9831
AMTR_s00049p00227500amborella_trichopodaERN1384436.363616.7273caenorhabditis_elegansT22B7.4.118.6228.56611
AMTR_s00049p00227500amborella_trichopodaERN1384434.545515.2727drosophila_melanogasterFBpp030968932.87214.5329
AMTR_s00049p00227500amborella_trichopodaERN1384438.545520.7273homo_sapiensENSP0000031611436.177519.4539
AMTR_s00049p00227500amborella_trichopodaERN1384436.363618.9091saccharomyces_cerevisiaeYCL010C38.6120.0772
AMTR_s00049p00227500amborella_trichopodaERN1384477.454564chenopodium_quinoaAUR62033204-RA:cds64.545553.3333
AMTR_s00049p00227500amborella_trichopodaERN138446848.3636chara_brauniiGBG6789913.78049.80103
AMTR_s00049p00227500amborella_trichopodaERN1384477.090962.1818arabis_alpinaKFK3366677.941262.8676
AMTR_s00049p00227500amborella_trichopodaERN1384468.363654.1818corylus_avellanaCav05g24080.t164.383651.0274
AMTR_s00049p00227500amborella_trichopodaERN1384476.727360.7273brachypodium_distachyonKQJ8686874.295858.8028
AMTR_s00049p00227500amborella_trichopodaERN1384467.636452oryza_glumipatulaOGLUM12G10350.263.265348.6395
AMTR_s00049p00227500amborella_trichopodaERN1384467.636452oryza_meridionalisOMERI12G06480.263.265348.6395
AMTR_s00049p00227500amborella_trichopodaERN1384473.454559.6364ipomoea_trilobaitb05g25720.t275.373161.194
AMTR_s00049p00227500amborella_trichopodaERN138447658.1818kalanchoe_fedtschenkoiKaladp0058s0330.1.v1.176.838258.8235
AMTR_s00049p00227500amborella_trichopodaERN1384474.181855.6364kalanchoe_fedtschenkoiKaladp0040s0394.1.v1.173.381355.036
AMTR_s00049p00227500amborella_trichopodaERN1384470.545552kalanchoe_fedtschenkoiKaladp0071s0335.1.v1.165.100747.9866
AMTR_s00049p00227500amborella_trichopodaERN1384436.363620galdieria_sulphurariaEME2792122.935812.6147
AMTR_s00049p00227500amborella_trichopodaERN1384477.090960.7273eucalyptus_grandisKCW5295578.810462.0818
AMTR_s00049p00227500amborella_trichopodaERN1384473.454558.5455cynara_cardunculusKVH9286580.158763.8889
AMTR_s00049p00227500amborella_trichopodaERN1384475.636460.7273trifolium_pratenseTp57577_TGAC_v2_mRNA112376.470661.3971
AMTR_s00049p00227500amborella_trichopodaERN1384477.818262.5455gossypium_raimondiiKJB4072679.850764.1791
AMTR_s00049p00227500amborella_trichopodaERN1384476.363660.7273gossypium_raimondiiKJB1157078.358262.3134
AMTR_s00049p00227500amborella_trichopodaERN1384446.909137.0909gossypium_raimondiiKJB115727559.3023
AMTR_s00049p00227500amborella_trichopodaERN1384476.727361.4545gossypium_raimondiiKJB7595478.731363.0597
AMTR_s00049p00227500amborella_trichopodaERN138447661.4545arabidopsis_lyratafgenesh1_pm.C_scaffold_700268171.821358.0756
AMTR_s00049p00227500amborella_trichopodaERN138447662.1818arabidopsis_lyratafgenesh1_pm.C_scaffold_500041874.910461.2903
AMTR_s00049p00227500amborella_trichopodaERN1384478.181860hordeum_vulgareHORVU.MOREX.r3.5HG0450920.175.704258.0986
AMTR_s00049p00227500amborella_trichopodaERN1384467.636452oryza_barthiiOBART12G09060.263.265348.6395
AMTR_s00049p00227500amborella_trichopodaERN1384480.727366.5455asparagus_officinalisONK6909082.222267.7778
AMTR_s00049p00227500amborella_trichopodaERN1384481.454568.3636musa_acuminataMa06_p29840.184.210570.6767
AMTR_s00049p00227500amborella_trichopodaERN1384476.363661.4545arabidopsis_hallerig26908.t276.923161.9048
AMTR_s00049p00227500amborella_trichopodaERN1384476.727362.5455arabidopsis_hallerig20576.t177.573563.2353
AMTR_s00049p00227500amborella_trichopodaERN1384473.090957.0909eragrostis_tefEt_10A_000637.CDS74.444458.1481
AMTR_s00049p00227500amborella_trichopodaERN1384477.454562.5455corymbia_citriodoracds-KAF8028955.179.182263.9405
AMTR_s00049p00227500amborella_trichopodaERN138447662.5455rosa_chinensisPRQ4954877.985164.1791
AMTR_s00049p00227500amborella_trichopodaERN1384476.363662.1818juglans_regiacds.Jr01_05390_p178.066963.5688
AMTR_s00049p00227500amborella_trichopodaERN138446853.4545juglans_regiacds.Jr01_05400_p175.100459.0361
AMTR_s00049p00227500amborella_trichopodaERN138447661.8182juglans_regiacds.Jr01_05380_p177.985163.4328
AMTR_s00049p00227500amborella_trichopodaERN1384456.363640saccharum_spontaneumSspon.01G0059800-1D-mRNA-1:cds50.819736.0656
AMTR_s00049p00227500amborella_trichopodaERN1384477.818260.3636triticum_dicoccoidesTRIDC5BG020050.457.372744.504
AMTR_s00049p00227500amborella_trichopodaERN1384470.181852.3636triticum_dicoccoidesTRIDC5AG019990.466.32349.4845
AMTR_s00049p00227500amborella_trichopodaERN1384476.363660.7273brassica_oleraceaBo7g084600.177.205961.3971
AMTR_s00049p00227500amborella_trichopodaERN1384442.909135.6364brassica_oleraceaBo2g142760.175.159262.4204
AMTR_s00049p00227500amborella_trichopodaERN138447660.7273oryza_indicaBGIOSGA036341-PA73.333358.5965
AMTR_s00049p00227500amborella_trichopodaERN1384430.181814.9091ciona_savignyiENSCSAVP0000001248234.439817.0124
AMTR_s00049p00227500amborella_trichopodaERN1384478.545564.7273dioscorea_rotundataDRNTG_15045.180.297466.171
AMTR_s00049p00227500amborella_trichopodaERN1384465.818250.5455leersia_perrieriLPERR12G08030.162.629848.0969
AMTR_s00049p00227500amborella_trichopodaERN1384460.727341.0909olea_europaeaOE9A048694C242.930629.0488
AMTR_s00049p00227500amborella_trichopodaERN1384476.727360.3636olea_europaeaOE9A042596C478.438761.71
AMTR_s00049p00227500amborella_trichopodaERN1384475.272758.1818olea_europaeaOE9A016944C275.824258.6081
AMTR_s00049p00227500amborella_trichopodaERN1384475.636458.1818olea_europaeaOE9A035404C277.323459.4796
AMTR_s00049p00227500amborella_trichopodaERN1384476.363656.7273olea_europaeaOE9A003062C778.358258.209
AMTR_s00049p00227500amborella_trichopodaERN1384475.272761.8182actinidia_chinensisPSR8754676.951763.197
AMTR_s00049p00227500amborella_trichopodaERN1384476.363659.2727actinidia_chinensisPSS3040778.066960.5948
AMTR_s00049p00227500amborella_trichopodaERN1384479.636464prunus_aviumPav_sc0000040.1_g620.1.mk:mrna80.811864.9446
AMTR_s00049p00227500amborella_trichopodaERN1384477.454561.0909quercus_subercds-POF10480.179.182262.4535
AMTR_s00049p00227500amborella_trichopodaERN1384474.909158.5455quercus_subercds-POE66745.176.865760.0746
AMTR_s00049p00227500amborella_trichopodaERN1384474.181860nicotiana_attenuataOIT2288176.119461.5672
AMTR_s00049p00227500amborella_trichopodaERN1384475.636462.9091citrus_clementinaESR5987577.03764.0741
AMTR_s00049p00227500amborella_trichopodaERN1384476.363660.7273brassica_rapa_ro18A06p049710.1_BraROA.177.777861.8519
AMTR_s00049p00227500amborella_trichopodaERN1384477.454561.4545daucus_carotaKZM9757478.888962.5926
AMTR_s00049p00227500amborella_trichopodaERN1384442.545533.0909nymphaea_colorataNC3G0208290.1:cds69.642954.1667
AMTR_s00049p00227500amborella_trichopodaERN1384441.818224.7273ostreococcus_lucimarinusABO9603636.624221.6561
AMTR_s00049p00227500amborella_trichopodaERN1384477.454563.6364coffea_canephoraCDP1661579.477665.2985
AMTR_s00049p00227500amborella_trichopodaERN1384470.545553.0909aegilops_tauschiiAET5Gv20299600.564.882948.8294
AMTR_s00049p00227500amborella_trichopodaERN1384474.545561.4545pistacia_veracds-EVM0015540.177.358563.7736
AMTR_s00049p00227500amborella_trichopodaERN1384459.636445.0909digitaria_exilisDexi3B01G0029480.1:cds71.615754.1485
AMTR_s00049p00227500amborella_trichopodaERN138446044.7273digitaria_exilisDexi3A01G0028500.1:cds72.052453.7118
AMTR_s00049p00227500amborella_trichopodaERN138447660.7273oryza_sativaOs12t0290600-0173.333358.5965
AMTR_s00049p00227500amborella_trichopodaERN138447659.2727panicum_halliiPUZ6689574.377258.0071
AMTR_s00049p00227500amborella_trichopodaERN1384475.636457.8182quercus_lobataQL05p033603:mrna68.196752.1311
AMTR_s00049p00227500amborella_trichopodaERN1384471.272754.5455quercus_lobataQL02p073949:mrna48.877837.4065
AMTR_s00049p00227500amborella_trichopodaERN1384475.636457.8182quercus_lobataQL05p032480:mrna68.196752.1311
AMTR_s00049p00227500amborella_trichopodaERN1384473.454556.7273eragrostis_curvulaTVU5160875.092957.9926
AMTR_s00049p00227500amborella_trichopodaERN1384476.363658.9091eragrostis_curvulaTVT9795675.268858.0645
AMTR_s00049p00227500amborella_trichopodaERN138447661.8182camelina_sativaCsa12g079380.177.407462.963
AMTR_s00049p00227500amborella_trichopodaERN1384476.363661.8182camelina_sativaCsa11g058840.177.205962.5
AMTR_s00049p00227500amborella_trichopodaERN1384468.727354.1818camelina_sativaCsa09g014560.174.409458.6614
AMTR_s00049p00227500amborella_trichopodaERN1384476.727362.1818camelina_sativaCsa04g015470.177.859863.0996
AMTR_s00049p00227500amborella_trichopodaERN1384476.363661.8182camelina_sativaCsa10g049020.177.777862.963
AMTR_s00049p00227500amborella_trichopodaERN1384469.090953.0909selaginella_moellendorffiiEFJ3044868.840652.8986
AMTR_s00049p00227500amborella_trichopodaERN1384468.727352.7273selaginella_moellendorffiiEFJ2308768.23152.3466
AMTR_s00049p00227500amborella_trichopodaERN138446451.2727vitis_viniferaVitvi14g01661_P00269.841355.9524
AMTR_s00049p00227500amborella_trichopodaERN138447661.8182eutrema_salsugineumESQ3272373.333359.6491
AMTR_s00049p00227500amborella_trichopodaERN1384475.636458.9091echinochloa_crusgalliscaffold416.13.cds74.021457.6512
AMTR_s00049p00227500amborella_trichopodaERN1384474.909158.9091echinochloa_crusgalliscaffold100.107.cds74.100758.2734
AMTR_s00049p00227500amborella_trichopodaERN1384473.818257.8182echinochloa_crusgalliscaffold384.23.cds77.480960.687
AMTR_s00049p00227500amborella_trichopodaERN1384477.454562.5455corchorus_capsularisOMO5932179.477664.1791
AMTR_s00049p00227500amborella_trichopodaERN1384450.545532.7273fraxinus_excelsiorFRAEX38873_v2_000315120.1.cds42.121227.2727
AMTR_s00049p00227500amborella_trichopodaERN1384470.545553.4545fraxinus_excelsiorFRAEX38873_v2_000002960.1.cds70.289953.2609
AMTR_s00049p00227500amborella_trichopodaERN1384465.818250.9091fraxinus_excelsiorFRAEX38873_v2_000350560.1.cds76.694959.322
AMTR_s00049p00227500amborella_trichopodaERN1384474.181860.7273citrullus_lanatusCla97C10G196550.176.691762.782
AMTR_s00049p00227500amborella_trichopodaERN1384474.909160oryza_nivaraONIVA12G08890.172.02857.6923

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression