Description

Ensembl ID AMTR_s00045p00062170 Gene ID Accession -
Symbol Alias - Full Name methyltransferases
Status Confidence Length 7416 bases Strand Minus strand
Position AmTr_v1.0_scaffold00045 : 627387 - 634802 RNA binding domain TRM13 , zf-TRM13_CCCH , zf-U11-48K
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN01966 TRM13 PF05206 4.8e-81 1
ERN01966 zf-TRM13_CCCH PF11722 1.9e-10 2
ERN01966 zf-U11-48K PF05253 4.6e-08 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN01966 1491 496aa ERN01966

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00045p00062170

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00045p00062170amborella_trichopodaERN0196631.048417.3387chondrus_crispusCDF393504022.3377
AMTR_s00045p00062170amborella_trichopodaERN0196656.451642.7419papaver_somniferumRZC5298832.369924.5087
AMTR_s00045p00062170amborella_trichopodaERN0196659.274244.9597papaver_somniferumRZC5606222.91517.3811
AMTR_s00045p00062170amborella_trichopodaERN0196648.588735.8871papaver_somniferumRZC8453133.333324.6196
AMTR_s00045p00062170amborella_trichopodaERN0196655.040339.5161marchantia_polymorphaPTQ3279255.828240.0818
AMTR_s00045p00062170amborella_trichopodaERN0196663.911349.7984cannabis_sativa_femalecds.novel_model_1144_5bd9a17a_novel_model_1145_5bd9a17a67.446852.5532
AMTR_s00045p00062170amborella_trichopodaERN0196660.282347.9839ficus_caricaFCD_00023269-RA:cds63.080250.211
AMTR_s00045p00062170amborella_trichopodaERN0196663.508149.7984beta_vulgarisKMT1001368.927854.0481
AMTR_s00045p00062170amborella_trichopodaERN0196664.919451.8145theobroma_cacaoEOX9539470.305756.1135
AMTR_s00045p00062170amborella_trichopodaERN0196642.741927.2177chlamydomonas_reinhardtiiPNW7145225.148316.0142
AMTR_s00045p00062170amborella_trichopodaERN0196654.032341.5323cucumis_meloMELO3C023610.2.166.666751.2438
AMTR_s00045p00062170amborella_trichopodaERN0196662.096848.3871arabidopsis_thalianaAT4G01880.167.991252.9801
AMTR_s00045p00062170amborella_trichopodaERN0196666.12951.2097populus_trichocarpaPotri.002G189800.1.v4.172.888956.4444
AMTR_s00045p00062170amborella_trichopodaERN0196662.548.7903cucumis_sativusKGN4506267.685652.8384
AMTR_s00045p00062170amborella_trichopodaERN0196663.709749.3952brassica_napusCDX9183670.693554.8098
AMTR_s00045p00062170amborella_trichopodaERN0196662.903248.5887brassica_napusCDX7439769.642953.7946
AMTR_s00045p00062170amborella_trichopodaERN0196664.717752.4194prunus_persicaONI1473069.18156.0345
AMTR_s00045p00062170amborella_trichopodaERN0196659.87945.9677cajanus_cajanC.cajan_41569.t64.989149.8906
AMTR_s00045p00062170amborella_trichopodaERN0196664.112950.8064malus_domestica_goldenmRNA:MD09G025040068.831254.5455
AMTR_s00045p00062170amborella_trichopodaERN0196622.983916.9355malus_domestica_goldenmRNA:MD17G023970057.575842.4242
AMTR_s00045p00062170amborella_trichopodaERN0196661.693648.9919glycine_maxKRH4964467.105353.2895
AMTR_s00045p00062170amborella_trichopodaERN0196664.516152.2177prunus_dulcisVVA2112468.965555.819
AMTR_s00045p00062170amborella_trichopodaERN0196661.491947.1774medicago_truncatulaKEH4059666.593951.0917
AMTR_s00045p00062170amborella_trichopodaERN0196646.774235.0806lupinus_angustifoliusOIV9411164.265948.1994
AMTR_s00045p00062170amborella_trichopodaERN0196655.645239.3145physcomitrium_patensPp3c21_16200V3.143.533130.7571
AMTR_s00045p00062170amborella_trichopodaERN0196661.895248.3871phaseolus_vulgarisESW2524367.621152.8634
AMTR_s00045p00062170amborella_trichopodaERN0196660.887146.9758pisum_sativumPsat6g046360.1.cds65.938950.8734
AMTR_s00045p00062170amborella_trichopodaERN0196661.693648.3871vigna_angularisKOM4597966.958452.5164
AMTR_s00045p00062170amborella_trichopodaERN0196662.298448.9919vigna_unguiculataVigun02g019800.1.v1.267.912153.4066
AMTR_s00045p00062170amborella_trichopodaERN0196663.709750.2016manihot_esculentaOAY4885971.331856.2077
AMTR_s00045p00062170amborella_trichopodaERN0196664.919448.9919solanum_lycopersicumSolyc01g068050.3.172.197354.4843
AMTR_s00045p00062170amborella_trichopodaERN0196664.919450.2016capsicum_annuumPHT9453771.555655.3333
AMTR_s00045p00062170amborella_trichopodaERN0196658.467744.3548vigna_radiataVradi11g12990.166.666750.5747
AMTR_s00045p00062170amborella_trichopodaERN0196664.516150sesamum_indicumSIN_1012654.t65.439750.7157
AMTR_s00045p00062170amborella_trichopodaERN0196660.080647.379lactuca_sativacds-PLY72987.172.15556.9007
AMTR_s00045p00062170amborella_trichopodaERN0196659.87947.5806helianthus_annuusmRNA:HanXRQr2_Chr04g017634170.714356.1905
AMTR_s00045p00062170amborella_trichopodaERN0196660.080646.5726avena_sativa_ot3098cds.AVESA.00001b.r3.7Cg0000208.163.404349.1489
AMTR_s00045p00062170amborella_trichopodaERN0196659.677447.1774lolium_perennecds.KYUSt_chr4.353565.342251.6556
AMTR_s00045p00062170amborella_trichopodaERN0196648.387135.2823oryza_longistaminataKN538869.1_FGP01357.97142.2705
AMTR_s00045p00062170amborella_trichopodaERN0196660.483946.371avena_sativa_sangAVESA.00010b.r2.4AG0617740.1.CDS66.225250.7726
AMTR_s00045p00062170amborella_trichopodaERN0196659.87946.1694avena_sativa_sangAVESA.00010b.r2.4DG0761160.1.CDS64.989150.1094
AMTR_s00045p00062170amborella_trichopodaERN0196660.080646.5726avena_sativa_sangAVESA.00010b.r2.7CG0712980.1.CDS65.783750.9934
AMTR_s00045p00062170amborella_trichopodaERN0196664.717748.9919solanum_tuberosumPGSC0003DMT40001336371.973154.4843
AMTR_s00045p00062170amborella_trichopodaERN0196659.87946.371oryza_rufipogonORUFI03G41700.164.008649.569
AMTR_s00045p00062170amborella_trichopodaERN0196660.483946.371oryza_brachyanthaOB03G47040.164.655249.569
AMTR_s00045p00062170amborella_trichopodaERN0196659.677446.1694oryza_glaberrimaORGLA03G0367700.163.793149.3534
AMTR_s00045p00062170amborella_trichopodaERN0196659.677446.9758oryza_punctataOPUNC03G37160.162.84549.4692
AMTR_s00045p00062170amborella_trichopodaERN0196659.677446.9758oryza_punctataOPUNC03G37120.162.84549.4692
AMTR_s00045p00062170amborella_trichopodaERN0196662.096846.9758setaria_italicaKQK8630967.543951.0965
AMTR_s00045p00062170amborella_trichopodaERN0196661.895246.7742setaria_viridisTKV9034867.324650.8772
AMTR_s00045p00062170amborella_trichopodaERN0196661.895246.9758sorghum_bicolorEER9058567.472551.2088
AMTR_s00045p00062170amborella_trichopodaERN0196647.782337.2984triticum_turgidumTRITD4Av1G222910.266.760652.1127
AMTR_s00045p00062170amborella_trichopodaERN0196660.080645.9677triticum_turgidumTRITD0Uv1G051180.560.816346.5306
AMTR_s00045p00062170amborella_trichopodaERN0196659.475846.9758secale_cerealeSECCE7Rv1G0462300.164.69351.0965
AMTR_s00045p00062170amborella_trichopodaERN0196660.080645.9677triticum_aestivumTraesCS5B02G512400.260.816346.5306
AMTR_s00045p00062170amborella_trichopodaERN0196659.274246.1694triticum_aestivumTraesCS4A02G360700.164.192150
AMTR_s00045p00062170amborella_trichopodaERN0196659.87946.7742triticum_aestivumTraesCS5D02G512600.164.565250.4348
AMTR_s00045p00062170amborella_trichopodaERN0196661.895245.9677zea_maysZm00001eb211340_P00267.770450.3311
AMTR_s00045p00062170amborella_trichopodaERN0196657.661344.3548ananas_comosusAco000690.1.mrna164.414449.5495
AMTR_s00045p00062170amborella_trichopodaERN0196636.895220.9677caenorhabditis_elegansY49A3A.3.146.923126.6667
AMTR_s00045p00062170amborella_trichopodaERN0196641.733926.4113drosophila_melanogasterFBpp008120946.938829.7052
AMTR_s00045p00062170amborella_trichopodaERN0196640.524225.6048homo_sapiensENSP0000035916041.787926.4033
AMTR_s00045p00062170amborella_trichopodaERN0196639.516123.1855saccharomyces_cerevisiaeYOL125W41.176524.1597
AMTR_s00045p00062170amborella_trichopodaERN0196621.169416.3306chenopodium_quinoaAUR62036055-RA:cds67.307751.9231
AMTR_s00045p00062170amborella_trichopodaERN0196622.177416.9355chenopodium_quinoaAUR62029044-RA:cds68.7552.5
AMTR_s00045p00062170amborella_trichopodaERN0196660.483948.1855chenopodium_quinoaAUR62011736-RA:cds69.444455.3241
AMTR_s00045p00062170amborella_trichopodaERN0196660.685548.5887chenopodium_quinoaAUR62024570-RA:cds69.675955.787
AMTR_s00045p00062170amborella_trichopodaERN0196651.814535.6855chara_brauniiGBG8963717.364911.9595
AMTR_s00045p00062170amborella_trichopodaERN0196662.701648.9919arabis_alpinaKFK3073772.325656.5116
AMTR_s00045p00062170amborella_trichopodaERN0196632.862925.4032corylus_avellanaCav02g16400.t164.426949.8024
AMTR_s00045p00062170amborella_trichopodaERN0196658.467746.1694corylus_avellanaCav02g16380.t156.640644.7266
AMTR_s00045p00062170amborella_trichopodaERN0196658.87146.371brachypodium_distachyonKQK1229863.89550.3282
AMTR_s00045p00062170amborella_trichopodaERN0196659.87946.371oryza_glumipatulaOGLUM03G39800.164.008649.569
AMTR_s00045p00062170amborella_trichopodaERN0196652.217740.121oryza_meridionalisOMERI03G36730.163.793149.0148
AMTR_s00045p00062170amborella_trichopodaERN0196662.550.2016ipomoea_trilobaitb07g21470.t171.428657.3733
AMTR_s00045p00062170amborella_trichopodaERN0196662.903245.7661kalanchoe_fedtschenkoiKaladp0082s0104.1.v1.170.270351.1261
AMTR_s00045p00062170amborella_trichopodaERN0196663.508148.5887eucalyptus_grandisKCW5816969.536453.2009
AMTR_s00045p00062170amborella_trichopodaERN0196626.612920.9677eucalyptus_grandisKCW4541969.841355.0265
AMTR_s00045p00062170amborella_trichopodaERN0196622.37916.3306eucalyptus_grandisKCW4542071.612952.2581
AMTR_s00045p00062170amborella_trichopodaERN0196660.685547.5806cynara_cardunculusKVI1250369.354854.3779
AMTR_s00045p00062170amborella_trichopodaERN0196661.290347.1774trifolium_pratenseTp57577_TGAC_v2_mRNA3810161.663347.4645
AMTR_s00045p00062170amborella_trichopodaERN0196664.919450.6048gossypium_raimondiiKJB0950570.305754.8035
AMTR_s00045p00062170amborella_trichopodaERN0196662.701648.7903arabidopsis_lyratafgenesh2_kg.6__3523__AT4G01880.167.903952.8384
AMTR_s00045p00062170amborella_trichopodaERN0196659.677445.9677hordeum_vulgareHORVU.MOREX.r3.5HG0529430.164.48849.6732
AMTR_s00045p00062170amborella_trichopodaERN0196659.677446.1694oryza_barthiiOBART03G39890.156.813843.9539
AMTR_s00045p00062170amborella_trichopodaERN0196653.024240.7258asparagus_officinalisONK7879467.435951.7949
AMTR_s00045p00062170amborella_trichopodaERN0196665.322650musa_acuminataMa05_p00070.164.541849.4024
AMTR_s00045p00062170amborella_trichopodaERN0196662.903248.3871arabidopsis_hallerig09181.t168.271352.5164
AMTR_s00045p00062170amborella_trichopodaERN0196648.991937.0968eragrostis_tefEt_4A_034259.CDS63.446548.0418
AMTR_s00045p00062170amborella_trichopodaERN0196645.362934.0726eragrostis_tefEt_4B_038398.CDS62.849247.2067
AMTR_s00045p00062170amborella_trichopodaERN0196624.596817.9435corymbia_citriodoracds-KAF8038005.167.03348.9011
AMTR_s00045p00062170amborella_trichopodaERN0196664.314550.2016corymbia_citriodoracds-KAF8014871.170.109954.7253
AMTR_s00045p00062170amborella_trichopodaERN0196664.516150.2016rosa_chinensisPRQ4510767.940652.8662
AMTR_s00045p00062170amborella_trichopodaERN0196663.104849.7984juglans_regiacds.Jr10_10940_p169.710555.0111
AMTR_s00045p00062170amborella_trichopodaERN0196644.758133.0645saccharum_spontaneumSspon.01G0031730-1A-mRNA-163.247946.7236
AMTR_s00045p00062170amborella_trichopodaERN0196621.774215.5242saccharum_spontaneumSspon.01G0031730-3D-mRNA-164.670746.1078
AMTR_s00045p00062170amborella_trichopodaERN0196659.87945.9677triticum_dicoccoidesTRIDC5BG076380.26650.6667
AMTR_s00045p00062170amborella_trichopodaERN0196656.854843.9516triticum_dicoccoidesTRIDC4AG053850.266.197251.1737
AMTR_s00045p00062170amborella_trichopodaERN0196663.306448.9919brassica_oleraceaBo3g053040.170.246154.3624
AMTR_s00045p00062170amborella_trichopodaERN0196656.854843.75oryza_indicaBGIOSGA013881-PA62.251747.9029
AMTR_s00045p00062170amborella_trichopodaERN0196660.887145.9677dioscorea_rotundataDRNTG_08420.168.792751.9362
AMTR_s00045p00062170amborella_trichopodaERN0196659.072645.1613leersia_perrieriLPERR03G34020.163.419948.4848
AMTR_s00045p00062170amborella_trichopodaERN0196664.112948.5887olea_europaeaOE9A011037C268.980552.2777
AMTR_s00045p00062170amborella_trichopodaERN0196653.225840.7258actinidia_chinensisPSS0606772.131155.1913
AMTR_s00045p00062170amborella_trichopodaERN0196664.919451.8145quercus_subercds-POF16983.169.546455.5076
AMTR_s00045p00062170amborella_trichopodaERN0196664.516148.7903nicotiana_attenuataOIT0845373.732755.7604
AMTR_s00045p00062170amborella_trichopodaERN0196663.306448.7903citrus_clementinaESR4776966.95151.5991
AMTR_s00045p00062170amborella_trichopodaERN0196663.306448.9919brassica_rapa_ro18A03p033140.1_BraROA.170.089354.2411
AMTR_s00045p00062170amborella_trichopodaERN0196664.717749.5968daucus_carotaKZN0356070.704854.185
AMTR_s00045p00062170amborella_trichopodaERN0196668.145253.8306nymphaea_colorataNC10G0266000.1:cds62.018348.9908
AMTR_s00045p00062170amborella_trichopodaERN0196641.12925ostreococcus_lucimarinusABO9451348.920929.7362
AMTR_s00045p00062170amborella_trichopodaERN0196663.911348.5887coffea_canephoraCDP1702168.466552.0518
AMTR_s00045p00062170amborella_trichopodaERN0196660.080646.9758aegilops_tauschiiAET5Gv21142900.164.923750.7625
AMTR_s00045p00062170amborella_trichopodaERN0196664.717750.6048pistacia_veracds-EVM0024647.172.624456.7873
AMTR_s00045p00062170amborella_trichopodaERN0196650.604838.3064digitaria_exilisDexi9B01G0002180.1:cds65.364649.4792
AMTR_s00045p00062170amborella_trichopodaERN0196650.604838.1048digitaria_exilisDexi9A01G0002430.1:cds65.364649.2188
AMTR_s00045p00062170amborella_trichopodaERN0196631.653224.5968oryza_sativaOs03t0833200-0162.848.8
AMTR_s00045p00062170amborella_trichopodaERN0196661.088746.371panicum_halliiPUZ3624561.585446.748
AMTR_s00045p00062170amborella_trichopodaERN0196665.524251.4113quercus_lobataQL12p034319:mrna69.444454.4872
AMTR_s00045p00062170amborella_trichopodaERN0196642.943631.25eragrostis_curvulaTVU4390750.117636.4706
AMTR_s00045p00062170amborella_trichopodaERN0196651.209738.1048eragrostis_curvulaTVU4430149.609436.9141
AMTR_s00045p00062170amborella_trichopodaERN0196662.701650camelina_sativaCsa13g055410.169.111155.1111
AMTR_s00045p00062170amborella_trichopodaERN0196662.548.7903camelina_sativaCsa02g005000.169.196454.0179
AMTR_s00045p00062170amborella_trichopodaERN0196650.201638.5081camelina_sativaCsa08g052660.170.940254.416
AMTR_s00045p00062170amborella_trichopodaERN0196650.806435.4839selaginella_moellendorffiiEFJ0975162.06943.3498
AMTR_s00045p00062170amborella_trichopodaERN0196626.612919.1532selaginella_moellendorffiiEFJ1165964.705946.5686
AMTR_s00045p00062170amborella_trichopodaERN0196665.725851.4113vitis_viniferaVitvi07g00477_P00170.562855.1948
AMTR_s00045p00062170amborella_trichopodaERN0196661.895248.1855eutrema_salsugineumESQ3783666.739151.9565
AMTR_s00045p00062170amborella_trichopodaERN0196661.895248.1855eutrema_salsugineumESQ3783166.739151.9565
AMTR_s00045p00062170amborella_trichopodaERN0196650.403238.3064echinochloa_crusgalliscaffold3.575.cds65.274249.6084
AMTR_s00045p00062170amborella_trichopodaERN0196661.895246.9758echinochloa_crusgalliscaffold176.327.cds67.324651.0965
AMTR_s00045p00062170amborella_trichopodaERN0196654.032340.9274echinochloa_crusgalliscaffold65.204.cds68.020351.5228
AMTR_s00045p00062170amborella_trichopodaERN0196663.709749.7984corchorus_capsularisOMO6408319.303615.0886
AMTR_s00045p00062170amborella_trichopodaERN0196665.927450fraxinus_excelsiorFRAEX38873_v2_000140230.1.cds70.779253.6797
AMTR_s00045p00062170amborella_trichopodaERN0196662.298449.1936citrullus_lanatusCla97C09G167040.167.320353.159
AMTR_s00045p00062170amborella_trichopodaERN0196659.87946.371oryza_nivaraONIVA03G41810.164.008649.569

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression