Description

Ensembl ID AMTR_s00039p00222790 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 3428 bases Strand Minus strand
Position AmTr_v1.0_scaffold00039 : 4567585 - 4571012 RNA binding domain DNA_pol_A_exo1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN15911 DNA_pol_A_exo1 PF01612 5.2e-19 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN15911 621 206aa ERN15911

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00039p00222790amborella_trichopodaERN1679215.06137.35552amborella_trichopodaERN1591141.747620.3883
AMTR_s00039p00222790amborella_trichopodaERN0330621.836212.9032amborella_trichopodaERN1591142.718425.2427

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00039p00222790amborella_trichopodaERN1591164.563153.3981papaver_somniferumRZC6214428.91323.913
AMTR_s00039p00222790amborella_trichopodaERN1591164.563152.9126papaver_somniferumRZC6864748.540139.781
AMTR_s00039p00222790amborella_trichopodaERN1591167.961251.9417cannabis_sativa_femalecds.evm.model.07.8645.161334.5161
AMTR_s00039p00222790amborella_trichopodaERN1591168.446653.8835ficus_caricaFCD_00035492-RA:cds47.474737.3737
AMTR_s00039p00222790amborella_trichopodaERN1591166.504950.4854ficus_caricaFCD_00026293-RA:cds49.458537.5451
AMTR_s00039p00222790amborella_trichopodaERN1591168.446653.8835ficus_caricaFCD_00026305-RA:cds47.474737.3737
AMTR_s00039p00222790amborella_trichopodaERN1591168.446656.7961beta_vulgarisKMT1482941.228134.2105
AMTR_s00039p00222790amborella_trichopodaERN1591170.388452.4272theobroma_cacaoEOY0515048.657736.2416
AMTR_s00039p00222790amborella_trichopodaERN1591140.776728.6408chlamydomonas_reinhardtiiPNW741927.304355.13043
AMTR_s00039p00222790amborella_trichopodaERN1591168.446649.5146cucumis_meloMELO3C006293.2.141.107929.7376
AMTR_s00039p00222790amborella_trichopodaERN1591165.53451.4563arabidopsis_thalianaAT4G13870.246.87536.8056
AMTR_s00039p00222790amborella_trichopodaERN1591133.980625.7282arabidopsis_thalianaAT4G13885.126.61620.1521
AMTR_s00039p00222790amborella_trichopodaERN1591147.087433.0097populus_trichocarpaPotri.001G320201.2.v4.156.725139.7661
AMTR_s00039p00222790amborella_trichopodaERN1591166.990352.4272populus_trichocarpaPotri.017G059200.6.v4.142.724533.4365
AMTR_s00039p00222790amborella_trichopodaERN1591168.93250cucumis_sativusKGN5671145.222932.8025
AMTR_s00039p00222790amborella_trichopodaERN1591168.446652.4272brassica_junceacds.BjuA04g07000S51.272739.2727
AMTR_s00039p00222790amborella_trichopodaERN1591167.475750.4854brassica_napusCDY5042050.545537.8182
AMTR_s00039p00222790amborella_trichopodaERN1591167.961252.4272brassica_napusCDY0117150.909139.2727
AMTR_s00039p00222790amborella_trichopodaERN1591166.990353.8835prunus_persicaONI2885843.12534.6875
AMTR_s00039p00222790amborella_trichopodaERN1591165.53450cajanus_cajanC.cajan_03194.t46.391835.3952
AMTR_s00039p00222790amborella_trichopodaERN1591167.475753.3981malus_domestica_goldenmRNA:MD05G019440043.034134.0557
AMTR_s00039p00222790amborella_trichopodaERN1591151.456341.2621glycine_maxKRH3156852.216741.8719
AMTR_s00039p00222790amborella_trichopodaERN1591163.106849.5146glycine_maxKRG9735044.520534.9315
AMTR_s00039p00222790amborella_trichopodaERN1591166.504953.8835prunus_dulcisVVA3489463.425951.3889
AMTR_s00039p00222790amborella_trichopodaERN1591161.650546.6019lupinus_angustifoliusOIW1468443.642632.9897
AMTR_s00039p00222790amborella_trichopodaERN1591162.135942.233physcomitrium_patensPp3c12_4220V3.432.487322.0812
AMTR_s00039p00222790amborella_trichopodaERN1591163.592249.5146phaseolus_vulgarisESW3581144.709934.8123
AMTR_s00039p00222790amborella_trichopodaERN1591165.048550pisum_sativumPsat5g100080.1.cds41.35831.7901
AMTR_s00039p00222790amborella_trichopodaERN1591163.592248.5437vigna_angularisKOM2540343.812733.4448
AMTR_s00039p00222790amborella_trichopodaERN1591164.563149.5146vigna_unguiculataVigun01g253000.1.v1.245.547934.9315
AMTR_s00039p00222790amborella_trichopodaERN1591159.708745.6311vigna_unguiculataVigun01g253100.1.v1.248.809537.3016
AMTR_s00039p00222790amborella_trichopodaERN1591166.990352.9126manihot_esculentaOAY5530943.260234.1693
AMTR_s00039p00222790amborella_trichopodaERN1591170.388455.8252solanum_lycopersicumSolyc09g092340.3.148.333338.3333
AMTR_s00039p00222790amborella_trichopodaERN1591169.417555.3398capsicum_annuumPHT6280162.173949.5652
AMTR_s00039p00222790amborella_trichopodaERN1591163.592249.0291vigna_radiataVradi0246s00350.144.406834.2373
AMTR_s00039p00222790amborella_trichopodaERN1591164.563154.8544sesamum_indicumSIN_1001192.t45.547938.6986
AMTR_s00039p00222790amborella_trichopodaERN1591164.563151.4563lactuca_sativacds-PLY62487.141.049432.716
AMTR_s00039p00222790amborella_trichopodaERN1591163.592250.9709helianthus_annuusmRNA:HanXRQr2_Chr01g003362140.557332.5077
AMTR_s00039p00222790amborella_trichopodaERN1591169.417551.9417avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0002322.242.814432.0359
AMTR_s00039p00222790amborella_trichopodaERN1591169.417552.4272avena_sativa_ot3098cds.AVESA.00001b.r3.Ung0000462.142.686632.2388
AMTR_s00039p00222790amborella_trichopodaERN1591169.902951.9417lolium_perennecds.KYUSt_chr4.4058049.146836.5188
AMTR_s00039p00222790amborella_trichopodaERN1591169.417551.9417avena_sativa_sangAVESA.00010b.r2.2DG0356450.3.CDS48.148136.0269
AMTR_s00039p00222790amborella_trichopodaERN1591169.902952.4272avena_sativa_sangAVESA.00010b.r2.2CG0325310.3.CDS48.322136.2416
AMTR_s00039p00222790amborella_trichopodaERN1591169.417552.4272avena_sativa_sangAVESA.00010b.r2.7AG1249060.1.CDS48.148136.3636
AMTR_s00039p00222790amborella_trichopodaERN1591169.902954.3689solanum_tuberosumPGSC0003DMT40005307347.840537.2093
AMTR_s00039p00222790amborella_trichopodaERN1591166.990351.4563oryza_rufipogonORUFI04G01580.148.251737.0629
AMTR_s00039p00222790amborella_trichopodaERN1591172.330155.3398oryza_brachyanthaOB0076G10010.144.744734.2342
AMTR_s00039p00222790amborella_trichopodaERN1591166.990351.9417oryza_punctataOPUNC04G01370.150.181838.9091
AMTR_s00039p00222790amborella_trichopodaERN1591168.93251.4563setaria_italicaKQK9627847.176135.2159
AMTR_s00039p00222790amborella_trichopodaERN1591168.93251.4563setaria_viridisTKW0305947.176135.2159
AMTR_s00039p00222790amborella_trichopodaERN1591126.69922.3301setaria_viridisTKW0305862.552.2727
AMTR_s00039p00222790amborella_trichopodaERN1591166.990350.4854sorghum_bicolorEES1177944.37333.4405
AMTR_s00039p00222790amborella_trichopodaERN1591169.902951.4563triticum_turgidumTRITD2Bv1G003190.248.813635.9322
AMTR_s00039p00222790amborella_trichopodaERN1591169.417551.4563triticum_turgidumTRITD2Av1G002730.248.310835.8108
AMTR_s00039p00222790amborella_trichopodaERN1591168.93250.9709secale_cerealeSECCE7Rv1G0525580.147.97335.473
AMTR_s00039p00222790amborella_trichopodaERN1591170.873852.4272triticum_aestivumTraesCS2D02G012000.148.993336.2416
AMTR_s00039p00222790amborella_trichopodaERN1591169.417551.4563triticum_aestivumTraesCS2A02G011600.148.310835.8108
AMTR_s00039p00222790amborella_trichopodaERN1591169.902951.4563triticum_aestivumTraesCS2B02G010000.148.813635.9322
AMTR_s00039p00222790amborella_trichopodaERN1591166.990351.9417zea_maysZm00001eb088960_P00145.544635.3135
AMTR_s00039p00222790amborella_trichopodaERN1591168.93256.3107chenopodium_quinoaAUR62018557-RA:cds44.236836.1371
AMTR_s00039p00222790amborella_trichopodaERN1591166.504954.3689chenopodium_quinoaAUR62020861-RA:cds60.087749.1228
AMTR_s00039p00222790amborella_trichopodaERN1591157.76739.8058chara_brauniiGBG678448.660845.96798
AMTR_s00039p00222790amborella_trichopodaERN1591165.53453.3981arabis_alpinaKFK3627647.368438.5965
AMTR_s00039p00222790amborella_trichopodaERN1591166.504951.9417arabis_alpinaKFK3623361.160747.7679
AMTR_s00039p00222790amborella_trichopodaERN1591167.961253.8835arabis_alpinaKFK3627458.577446.4435
AMTR_s00039p00222790amborella_trichopodaERN1591169.902950.9709brachypodium_distachyonKQJ8154449.315135.9589
AMTR_s00039p00222790amborella_trichopodaERN1591170.873853.8835oryza_glumipatulaOGLUM09G00580.148.993337.2483
AMTR_s00039p00222790amborella_trichopodaERN1591154.854441.2621oryza_meridionalisOMERI04G01180.137.541528.2392
AMTR_s00039p00222790amborella_trichopodaERN1591165.53451.9417ipomoea_trilobaitb01g28210.t144.117634.9673
AMTR_s00039p00222790amborella_trichopodaERN1591145.145634.466ipomoea_trilobaitb01g28230.t16247.3333
AMTR_s00039p00222790amborella_trichopodaERN1591162.135950.4854kalanchoe_fedtschenkoiKaladp0081s0052.1.v1.145.229736.7491
AMTR_s00039p00222790amborella_trichopodaERN1591166.990350.4854eucalyptus_grandisKCW599554634.6667
AMTR_s00039p00222790amborella_trichopodaERN1591151.941744.1748cynara_cardunculusKVI0036732.522827.6596
AMTR_s00039p00222790amborella_trichopodaERN1591160.194245.1456trifolium_pratenseTp57577_TGAC_v2_mRNA2624549.402437.0518
AMTR_s00039p00222790amborella_trichopodaERN1591166.990350.9709gossypium_raimondiiKJB7201046.621635.473
AMTR_s00039p00222790amborella_trichopodaERN1591165.53451.4563arabidopsis_lyratafgenesh2_kg.7__2957__AT4G13870.247.202837.0629
AMTR_s00039p00222790amborella_trichopodaERN1591169.902951.9417hordeum_vulgareHORVU.MOREX.r3.2HG0096810.148.813636.2712
AMTR_s00039p00222790amborella_trichopodaERN1591168.93251.4563oryza_barthiiOBART04G01330.148.464236.1775
AMTR_s00039p00222790amborella_trichopodaERN1591173.786457.767asparagus_officinalisONK7092448.407637.8981
AMTR_s00039p00222790amborella_trichopodaERN1591155.825245.6311musa_acuminataMa00_p03510.143.396235.4717
AMTR_s00039p00222790amborella_trichopodaERN1591166.990351.4563eragrostis_tefEt_7B_054387.CDS47.09936.1775
AMTR_s00039p00222790amborella_trichopodaERN1591168.93253.3981eragrostis_tefEt_7A_051813.CDS46.103935.7143
AMTR_s00039p00222790amborella_trichopodaERN1591166.990350corymbia_citriodoracds-KAF7848168.14634.3333
AMTR_s00039p00222790amborella_trichopodaERN1591165.53450corymbia_citriodoracds-KAF8016279.14534.3333
AMTR_s00039p00222790amborella_trichopodaERN1591166.990350corymbia_citriodoracds-KAF8016277.163.302847.2477
AMTR_s00039p00222790amborella_trichopodaERN1591166.019451.9417rosa_chinensisPRQ3841041.717832.8221
AMTR_s00039p00222790amborella_trichopodaERN1591168.93252.4272juglans_regiacds.Jr07_14580_p144.236833.6449
AMTR_s00039p00222790amborella_trichopodaERN1591165.53449.5146saccharum_spontaneumSspon.05G0014840-1P-mRNA-1:cds45.454534.3434
AMTR_s00039p00222790amborella_trichopodaERN1591161.650546.6019saccharum_spontaneumSspon.05G0014840-2B-mRNA-1:cds63.548
AMTR_s00039p00222790amborella_trichopodaERN1591166.019450saccharum_spontaneumSspon.05G0014840-1A-mRNA-1:cds45.791234.6801
AMTR_s00039p00222790amborella_trichopodaERN1591132.524324.2718saccharum_spontaneumSspon.05G0014840-4D-mRNA-128.389821.1864
AMTR_s00039p00222790amborella_trichopodaERN1591169.417550.9709triticum_dicoccoidesTRIDC2BG001130.164.414447.2973
AMTR_s00039p00222790amborella_trichopodaERN1591169.417551.4563triticum_dicoccoidesTRIDC2AG001180.248.639536.0544
AMTR_s00039p00222790amborella_trichopodaERN1591167.475750.4854brassica_oleraceaBo4g129540.149.820837.276
AMTR_s00039p00222790amborella_trichopodaERN1591154.854441.7476oryza_indicaBGIOSGA015672-PA44.140633.5938
AMTR_s00039p00222790amborella_trichopodaERN1591161.16547.0874leersia_perrieriLPERR04G00700.147.547236.6038
AMTR_s00039p00222790amborella_trichopodaERN1591166.504953.3981olea_europaeaOE9A085259C237.637430.2198
AMTR_s00039p00222790amborella_trichopodaERN1591167.475754.3689olea_europaeaOE9A007901C143.848635.3312
AMTR_s00039p00222790amborella_trichopodaERN1591168.446658.2524actinidia_chinensisPSS3566243.119336.6972
AMTR_s00039p00222790amborella_trichopodaERN1591166.019453.3981prunus_aviumPav_sc0000100.1_g470.1.mk:mrna42.534.375
AMTR_s00039p00222790amborella_trichopodaERN1591163.592252.9126quercus_subercds-POF06084.145.804238.1119
AMTR_s00039p00222790amborella_trichopodaERN1591170.388454.3689citrus_clementinaESR3426347.697436.8421
AMTR_s00039p00222790amborella_trichopodaERN1591168.446652.4272brassica_rapa_ro18A04p010500.1_BraROA.151.272739.2727
AMTR_s00039p00222790amborella_trichopodaERN1591167.475750.9709daucus_carotaKZM8740039.488629.8295
AMTR_s00039p00222790amborella_trichopodaERN1591163.592249.5146nymphaea_colorataNC12G0187530.1:cds37.643729.3103
AMTR_s00039p00222790amborella_trichopodaERN1591166.504954.8544coffea_canephoraCDP1118043.492135.873
AMTR_s00039p00222790amborella_trichopodaERN1591170.873852.4272aegilops_tauschiiAET2Gv20022600.144.108832.6284
AMTR_s00039p00222790amborella_trichopodaERN1591172.815556.3107pistacia_veracds-EVM0007683.154.945142.4908
AMTR_s00039p00222790amborella_trichopodaERN1591172.815556.3107pistacia_veracds-EVM0006362.155.147142.6471
AMTR_s00039p00222790amborella_trichopodaERN1591170.873853.8835oryza_sativaOs04t0129200-0048.993337.2483
AMTR_s00039p00222790amborella_trichopodaERN1591168.446652.9126panicum_halliiPUZ4614341.592932.1534
AMTR_s00039p00222790amborella_trichopodaERN1591163.106850.9709quercus_lobataQL06p025925:mrna26.262621.2121
AMTR_s00039p00222790amborella_trichopodaERN1591169.902953.8835eragrostis_curvulaTVU0702348.322137.2483
AMTR_s00039p00222790amborella_trichopodaERN1591167.475752.9126camelina_sativaCsa10g032920.147.440337.2014
AMTR_s00039p00222790amborella_trichopodaERN1591165.048550.9709camelina_sativaCsa12g061570.148.727338.1818
AMTR_s00039p00222790amborella_trichopodaERN1591161.16545.6311selaginella_moellendorffiiEFJ250006347
AMTR_s00039p00222790amborella_trichopodaERN1591162.135946.6019selaginella_moellendorffiiEFJ153496448
AMTR_s00039p00222790amborella_trichopodaERN1591158.737948.5437vitis_viniferaVitvi05g01106_P00140.199333.2226
AMTR_s00039p00222790amborella_trichopodaERN1591167.961252.4272eutrema_salsugineumESQ5629948.780537.6307
AMTR_s00039p00222790amborella_trichopodaERN1591168.446651.9417echinochloa_crusgalliscaffold56.126.cds46.229535.082
AMTR_s00039p00222790amborella_trichopodaERN1591168.93251.4563echinochloa_crusgalliscaffold158.136.cds46.864734.9835
AMTR_s00039p00222790amborella_trichopodaERN1591168.446651.4563echinochloa_crusgalliscaffold134.4.cds35.969427.0408
AMTR_s00039p00222790amborella_trichopodaERN1591164.563149.0291corchorus_capsularisOMO9660426.388920.0397
AMTR_s00039p00222790amborella_trichopodaERN1591166.019455.8252fraxinus_excelsiorFRAEX38873_v2_000336220.2.cds37.988832.1229
AMTR_s00039p00222790amborella_trichopodaERN1591167.961250.4854citrullus_lanatusCla97C05G083750.144.58633.121
AMTR_s00039p00222790amborella_trichopodaERN1591166.990351.4563oryza_nivaraONIVA04G01070.148.251737.0629

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression